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niman

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  1. niman
    Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ
  2. niman
    Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 25, 2016) StatesTravel-associated cases* No. (%) (N=591)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona3 (1)0 (0)Arkansas3 (1)0 (0)California44 (7)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia4 (1)0 (0)Florida121 (20)0 (0)Georgia15 (3)0 (0)Hawaii9 (2)0 (0)Illinois16 (3)0 (0)Indiana6 (1)0 (0)Iowa6 (1)0 (0)Kansas2 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine5 (1)0 (0)Maryland17 (3)0 (0)Massachusetts16 (3)0 (0) http://www.cdc.gov/zika/geo/united-states.html
  3. niman
    Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ
  4. niman
    Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 25, 2016) StatesTravel-associated cases* No. (%) (N=591)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona3 (1)0 (0)Arkansas3 (1)0 (0)California44 (7)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia4 (1)0 (0)Florida121 (20)0 (0)Georgia15 (3)0 (0) http://www.cdc.gov/zika/geo/united-states.html
  5. niman
    NPC Luncheon with CDC Director Dr. Tom FriedenAddThis Sharing ButtonsMay 26, 2016 12:30 PM Speakers NPC Location: Ballroom This is a ticketed event. Click here to jump to the ticket form. Please note new date: May 26. Livestream will begin May 26 at 1:00pm EDT. Dr. Tom Frieden, director of the U.S. Centers for Disease Control and Prevention, will address the Zika virus outbreak at a May 26 National Press Club speaker luncheon. Frieden, who has led the CDC since 2009, will discuss the latest research and forecasts, as scientists at the CDC and other leading health-related organizations are working around the clock to better understand and address the virus tied to birth defects. Lunch will be served at 12:30 p.m., with remarks beginning at 1 p.m., followed by a Q&A session ending at 2 p.m. Tickets cost $24 for National Press Club members and one guest, and $38 for non-members. For questions, please [email protected] or call (202) 662-7501. NPC members who wish to attend the pre-luncheon reception must RSVP separately [email protected] at least 48 hours in advance. Space may be limited. You must have a paid reservation to the luncheon to attend the VIP reception. To submit a question in advance, put NPCCDC in the subject line and email [email protected] before the day of the luncheon. http://www.press.org/events/npc-luncheon-cdc-director-dr-tom-frieden FOR MORE INFORMATION ON THIS EVENT, CONTACT: Lindsay Underwood 202-662-7561 [email protected]
  6. niman
  7. niman
    Seq map update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
  8. niman
    Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds439439100%1e-119100%KX261855.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome439439100%1e-119100%KX262887.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome439439100%1e-119100%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds439439100%1e-119100%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome439439100%1e-119100%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome439439100%1e-119100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome439439100%1e-119100%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome439439100%1e-119100%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome439439100%1e-119100%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome439439100%1e-119100%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome439439100%1e-119100%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome439439100%1e-119100%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds439439100%1e-119100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds439439100%1e-119100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome439439100%1e-119100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome439439100%1e-119100%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds439439100%1e-119100%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds439439100%1e-119100%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome439439100%1e-119100%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds439439100%1e-119100%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds439439100%1e-119100%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds439439100%1e-119100%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds439439100%1e-119100%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID439439100%1e-119100%AB908162.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds43543599%1e-118100%KM212966.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome434434100%5e-11899%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome434434100%5e-11899%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds434434100%5e-11899%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds434434100%5e-11899%KU820897.2Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome434434100%5e-11899%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome434434100%5e-11899%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds434434100%5e-11899%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds434434100%5e-11899%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds434434100%5e-11899%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds434434100%5e-11899%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome434434100%5e-11899%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome434434100%5e-11899%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome434434100%5e-11899%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome434434100%5e-11899%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome434434100%5e-11899%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds434434100%5e-11899%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds434434100%5e-11899%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds434434100%5e-11899%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome434434100%5e-11899%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds434434100%5e-11899%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds434434100%5e-11899%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome434434100%5e-11899%KU926309.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome434434100%5e-11899%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds434434100%5e-11899%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome434434100%5e-11899%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome434434100%5e-11899%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome434434100%5e-11899%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome434434100%5e-11899%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds434434100%5e-11899%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds434434100%5e-11899%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome434434100%5e-11899%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds434434100%5e-11899%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds434434100%5e-11899%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds434434100%5e-11899%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds434434100%5e-11899%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome434434100%5e-11899%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds434434100%5e-11899%KJ776791.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome430430100%6e-11799%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome430430100%6e-11799%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds430430100%6e-11799%KU686218.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds43043099%6e-11799%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds43043099%6e-11799%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds43043099%6e-11799%KM212963.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds430430100%6e-11799%JN860885.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds425425100%3e-11599%KX261853.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds425425100%3e-11599%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome425425100%3e-11599%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds425425100%3e-11599%KF993678.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds42342397%9e-11599%KX261852.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds42342396%9e-115100%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds42342396%9e-115100%KJ579441.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds421421100%3e-11498%EU545988.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds41741796%4e-11399%KJ680134.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds40840894%2e-11099%KU954085.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds40740793%7e-11099%KX261854.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds39939994%1e-10799%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds39939990%1e-107100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds39939990%1e-107100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds39939990%1e-107100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds39939990%1e-107100%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds39939990%1e-107100%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds39439490%4e-10699%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds39439490%4e-10699%KJ634273.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds37637688%1e-10099%KT381874.1
  9. niman

    Texas Zika Tally Page

    niman replied to niman's topic in Texas

    Zika Virus – May 26, 2016. Texas has had 36 confirmed cases of Zika virus disease. Of those, 35 were in travelers who were infected abroad and diagnosed after they returned home; one of those travelers was a pregnant woman. One case involved a Dallas County resident who had sexual contact with someone who acquired the Zika infection while traveling abroad. Case counts by county: Bexar – 3 Collin – 1 Dallas – 6 Denton – 2 Fort Bend – 2 Grayson – 1Harris – 13 Tarrant – 3 Travis – 2 Val Verde – 1 Williamson – 1 Wise – 1
  10. niman
    Pregnant Women with Any Laboratory Evidence of Possible Zika Virus InfectionUS States and the District of Columbia Pregnant women with any laboratory evidence of possible Zika virus infection: 168**This update includes aggregated data reported to the US Zika Pregnancy Registry as of May 26, 2016. US Territories Pregnant women with any laboratory evidence of possible Zika virus infection: 142**This update includes data from the US territories reported to the US Zika Pregnancy Registry and data from Puerto Rico reported to the Zika Active Pregnancy Surveillance System as of May 26, 2016. About These NumbersWhat these updated numbers show These updated numbers reflect counts of pregnant women in the United States with any laboratory evidence of possible Zika virus infection, with or without symptoms. Pregnant women with laboratory evidence include those in whom viral particles have been detected and those with evidence of an immune reaction to a recent virus that is likely to be Zika.This information will help healthcare providers as they counsel pregnant women affected by Zika and is essential for planning at the federal, state, and local levels for clinical, public health, and other services needed to support pregnant women and families affected by Zika.What these new numbers do not show These new numbers are not comparable to the previous reports. These updated numbers reflect a different, broader population of pregnant women.These updated numbers are not real time estimates. They will reflect the number of pregnant women reported with any laboratory evidence of possible Zika virus infection as of 12 noon every Thursday the week prior; numbers will be delayed one week.Where do these numbers come from? These data reflect pregnant women in the US Zika Pregnancy Registry and the Zika Active Pregnancy Surveillance System in Puerto Rico. CDC, in collaboration with state, local, tribal and territorial health departments, established these registries for comprehensive monitoring of pregnancy and infant outcomes following Zika virus infection. The data collected through these registries will be used to update recommendations for clinical care, to plan for services and support for pregnant women and families affected by Zika virus, and to improve prevention of Zika virus infection during pregnancy. Page last reviewed: May 20, 2016Page last updated: May 26, 2016
  11. niman
    As of May 25, 2016 (5 am EST) Zika virus disease and Zika virus congenital infection are nationally notifiable conditions.This update from the CDC Arboviral Disease Branch includes provisional data reported to ArboNET for January 1, 2015 – May 18, 2016.US States Travel-associated cases reported: 591Locally acquired vector-borne cases reported: 0Total: 591Sexually transmitted: 11Guillain-Barré syndrome: 1US Territories Travel-associated cases reported: 4Locally acquired cases reported: 935Total: 939Guillain-Barré syndrome: 5 Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 25, 2016) StatesTravel-associated cases* No. (%) (N=591)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona3 (1)0 (0)Arkansas3 (1)0 (0)California44 (7)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia4 (1)0 (0)Florida121 (20)0 (0)Georgia15 (3)0 (0)Hawaii9 (2)0 (0)Illinois16 (3)0 (0)Indiana6 (1)0 (0)Iowa6 (1)0 (0)Kansas2 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine5 (1)0 (0)Maryland17 (3)0 (0)Massachusetts16 (3)0 (0)Michigan4 (1)0 (0)Minnesota17 (3)0 (0)Mississippi3 (1)0 (0)Missouri3 (1)0 (0)Montana1 (<1)0 (0)Nebraska2 (<1)0 (0)Nevada6 (1)0 (0)New Hampshire3 (1)0 (0)New Jersey14 (2)0 (0)New Mexico1 (<1)0 (0)New York127 (22)0 (0)North Carolina12 (2)0 (0)Ohio12 (2)0 (0)Oklahoma4 (1)0 (0)Oregon6 (1)0 (0)Pennsylvania19 (3)0 (0)Rhode Island4 (1)0 (0)South Carolina1 (<1)0 (0)Tennessee3 (1)0 (0)Texas36 (6)0 (0)Utah2 (<1)0 (0)Vermont1 (<1)0 (0)Virginia15 (3)0 (0)Washington3 (1)0 (0)Wisconsin2 (<1)0 (0)West Virginia6 (1)0 (0) Territories(N=4)(N=935)American Samoa0 (0)17 (2)Puerto Rico3 (75)903 (96)US Virgin Islands1 (25)15 (2)*Travelers returning from affected areas, their sexual contacts, or infants infected in utero †Presumed local mosquito-borne transmission Page last reviewed: February 4, 2016Page last updated: May 25, 2016
  12. niman
    LOCUS KX261855 243 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL16 polyprotein gene, partial cds. ACCESSION KX261855 VERSION KX261855.1 GI:1031621539 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 243) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 243) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..243 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL16" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>243 /codon_start=2 /product="polyprotein" /protein_id="ANG09404.1" /db_xref="GI:1031621540" /translation="LIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQD KPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSR" ORIGIN 1 gctgattgcc ccggcataca gcatcaggtg cataggagtc agcaataggg actttgtgga 61 aggtatgtca ggtgggactt gggttgatgt tgtcttggaa catggaggtt gtgtcaccgt 121 aatggcacag gacaaaccga ctgtcgacat agagctggtt acaacaacag tcagcaacat 181 ggcggaggta agatcctact gctatgaggc atcaatatca gacatggctt cggacagccg 241 ctg
  13. niman
    Universidad El Bosque in Bogota has released partial Zika sequences from Colombia cases.
  14. niman
    Sequence map update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
  15. niman
    Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome883883100%0.0100%KX253996.1Select seq gb|KX247638.1|Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds883883100%0.0100%KX247638.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome883883100%0.0100%KX087101.2Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds883883100%0.0100%KX185891.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome883883100%0.0100%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds883883100%0.0100%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds883883100%0.0100%KU955589.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome883883100%0.0100%KU926310.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds883883100%0.0100%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome883883100%0.0100%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds883883100%0.0100%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome883883100%0.0100%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome883883100%0.0100%KU527068.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome883883100%0.0100%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds883883100%0.0100%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds883883100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds883883100%0.0100%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds883883100%0.0100%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds883883100%0.0100%KJ776791.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome877877100%0.099%KX262887.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds877877100%0.099%KX247632.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome877877100%0.099%KX197192.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome877877100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome877877100%0.099%KU509998.3Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds877877100%0.099%KU978616.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds877877100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome877877100%0.099%KU940228.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome877877100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome877877100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome877877100%0.099%KU853012.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds877877100%0.099%KU729217.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome877877100%0.099%KU744693.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds877877100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds877877100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds877877100%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome877877100%0.099%KU321639.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds874874100%0.099%KU937936.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome874874100%0.099%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome874874100%0.099%KX156775.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome874874100%0.099%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome874874100%0.099%KU870645.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds874874100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds874874100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds874874100%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome874874100%0.099%KU497555.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome868868100%0.099%KX247646.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds868868100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome868868100%0.099%KX198135.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome868868100%0.099%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome868868100%0.099%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds868868100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds868868100%0.099%KU955590.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome868868100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome868868100%0.099%KU922923.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds868868100%0.099%KU647676.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome865865100%0.099%KU681081.3Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds86186199%0.099%KU740199.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome847847100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds847847100%0.098%JN860885.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome841841100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds841841100%0.098%KF993678.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds82082093%0.099%KU872850.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome809809100%0.096%KU940227.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds796796100%0.096%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds771771100%0.095%HQ234499.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome75575586%0.099%KX101063.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome722722100%0.091%KX101064.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome654654100%0.087%KX101065.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds59259299%2e-16587%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds59259299%2e-16587%KF268948.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds58758799%8e-16487%DQ859059.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds58358399%1e-16286%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds57857899%4e-16186%KF383115.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds56556599%3e-15786%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence56556599%3e-15786%KF383120.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds56556599%3e-15786%KF383119.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds56556599%3e-15786%KF383118.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds56056099%1e-15585%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome56056099%1e-15585%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds56056099%1e-15585%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID56056099%1e-15585%LC002520.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds56056099%1e-15585%KF383116.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds56056099%1e-15585%HQ234498.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome56056099%1e-15585%AY632535.2Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds55655699%1e-15485%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds55655699%1e-15485%HQ234500.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome55155199%6e-15385%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome55155199%6e-15385%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome55155199%6e-15385%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome55155199%6e-15385%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds55155199%6e-15385%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds53853899%4e-14984%KF383117.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome53375085%2e-14799%KX101061.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome30253861%5e-78100%KX101067.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome27741547%2e-7099%KX101066.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome14728232%2e-3199%KX101062.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome14514516%8e-31100%KX101060.1
  16. niman
    LOCUS KX247638 489 bp RNA linear VRL 17-MAY-2016 DEFINITION Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds. ACCESSION KX247638 VERSION KX247638.1 GI:1028727779 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 489) AUTHORS Karan,L.S., Maleev,V.V., Fedorova,M.V., Grigorieva,Y.E., Bulanenko,V.P. and Shipulin,G.A. TITLE Direct Submission JOURNAL Submitted (16-MAY-2016) Central Research Institute of Epidemiology, Novogireevskaya Str, 3a, Moscow 111123, Russia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..489 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Dominican_Rep-Rus-3-2016" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Russia" /collection_date="09-May-2016" CDS <1..>489 /note="NS2a-NS2b" /codon_start=1 /product="polyprotein" /protein_id="ANF04751.1" /db_xref="GI:1028727780" /translation="LLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVR LVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI VSY" ORIGIN 1 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 61 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 121 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca 181 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg 241 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct 301 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag 361 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga 421 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 481 gtcagttac
  17. niman
    Central Research Institute of Epidemiology in Moscow has released a partial Zika sequence from a traveler from Dominican Republic collected May 6, 2016.
  18. niman
    Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
  19. niman
    Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds594594100%3e-166100%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds594594100%3e-166100%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds594594100%3e-166100%KX173840.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome589589100%1e-16499%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds589589100%1e-16499%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome589589100%1e-16499%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome589589100%1e-16499%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome589589100%1e-16499%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome589589100%1e-16499%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome589589100%1e-16499%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome589589100%1e-16499%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome589589100%1e-16499%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds589589100%1e-16499%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds589589100%1e-16499%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome589589100%1e-16499%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome589589100%1e-16499%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds589589100%1e-16499%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds589589100%1e-16499%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome589589100%1e-16499%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds589589100%1e-16499%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds589589100%1e-16499%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds589589100%1e-16499%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds589589100%1e-16499%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID589589100%1e-16499%AB908162.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds585585100%2e-16399%KU820897.2Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome585585100%2e-16399%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome585585100%2e-16399%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds585585100%2e-16399%KX185891.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome585585100%2e-16399%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome585585100%2e-16399%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome585585100%2e-16399%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome585585100%2e-16399%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome585585100%2e-16399%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds585585100%2e-16399%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds585585100%2e-16399%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds585585100%2e-16399%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds585585100%2e-16399%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds585585100%2e-16399%KU955589.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome585585100%2e-16399%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome585585100%2e-16399%KU926309.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome585585100%2e-16399%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds585585100%2e-16399%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome585585100%2e-16399%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome585585100%2e-16399%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome585585100%2e-16399%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds585585100%2e-16399%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds585585100%2e-16399%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome585585100%2e-16399%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds585585100%2e-16399%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds585585100%2e-16399%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds585585100%2e-16399%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds585585100%2e-16399%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome585585100%2e-16399%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds585585100%2e-16399%KJ776791.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome580580100%8e-16299%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome580580100%8e-16299%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome580580100%8e-16299%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds580580100%8e-16299%KF993678.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds580580100%8e-16299%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds576576100%9e-16199%KU729217.2Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds567567100%5e-15898%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome56556599%2e-15798%KU681082.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds562562100%2e-15698%KU686218.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds54754793%5e-15299%KU312315.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome54554593%2e-15199%KU940227.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds52952989%1e-146100%KU646828.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds52952989%1e-14699%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52652689%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52652689%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52652689%1e-14599%KM212963.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds52452489%5e-14599%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds52452489%5e-14599%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds513513100%9e-14295%HQ234499.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50250285%2e-13899%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds49949985%2e-13799%KJ680134.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds486486100%1e-13393%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds471471100%3e-12992%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds468468100%3e-12891%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds468468100%3e-12891%KF268948.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds462462100%1e-12691%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds462462100%1e-12691%HQ234500.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds459459100%2e-12591%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome459459100%2e-12591%KU955594.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds459459100%2e-12591%KF383117.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds459459100%2e-12591%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds459459100%2e-12591%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome459459100%2e-12591%AY632535.2Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome45345377%8e-12499%KX101061.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds453453100%8e-12491%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID453453100%8e-12491%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds453453100%8e-12491%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds453453100%8e-12491%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds453453100%8e-12491%HQ234498.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome45245275%3e-123100%KX101066.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome450450100%9e-12390%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome450450100%9e-12390%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome450450100%9e-12390%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome450450100%9e-12390%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds450450100%9e-12390%HQ234501.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds44344374%1e-120100%KX173843.1
  20. niman
    LOCUS KX173842 329 bp RNA linear VRL 06-MAY-2016 DEFINITION Zika virus isolate 16Z08 envelope protein gene, partial cds. ACCESSION KX173842 VERSION KX173842.1 GI:1026288131 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 329) AUTHORS Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A., Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H., Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M., Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr. TITLE Transmission of Zika Virus by Platelet Transfusion JOURNAL Unpublished REFERENCE 2 (bases 1 to 329) AUTHORS Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A., Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H., Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M., Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr. TITLE Direct Submission JOURNAL Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho University Hospital, Federal University of Rio de Janeiro, Rio de Janeiro, RJ 21942-901, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 7.0.0; BioEdit v. 7.2.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..329 /organism="Zika virus" /mol_type="genomic RNA" /isolate="16Z08" /isolation_source="plasma" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="11-Feb-2016" CDS <1..>329 /codon_start=1 /product="envelope protein" /protein_id="ANC90422.1" /db_xref="GI:1026288132" /translation="LVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVT VMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQY VCKRTLV" ORIGIN 1 ttggtcatga tactgctgat tgccccggca tatagcatca ggtgcatagg agtcagcaat 61 agggactttg tggaaggtat gtcaggtggg acttgggttg atgttgtctt ggaacatgga 121 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca 181 acagtcagca acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg 241 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact 301 caatatgtct gcaaaagaac gttagtgga
  21. niman
    Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
  22. niman
    Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds16731673100%0.0100%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds16731673100%0.0100%KX173840.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome16631663100%0.099%KX262887.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome16631663100%0.099%KU870645.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome16581658100%0.099%KX253996.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds16581658100%0.099%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome16581658100%0.099%KX087101.2Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds16581658100%0.099%KX185891.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds16581658100%0.099%KU937936.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome16581658100%0.099%KX117076.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome16581658100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome16581658100%0.099%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds16581658100%0.099%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds16581658100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome16581658100%0.099%KU940228.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds16581658100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome16581658100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds16581658100%0.099%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome16581658100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome16581658100%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome16581658100%0.099%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds16581658100%0.099%KU729218.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome16581658100%0.099%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds16581658100%0.099%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome16581658100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds16581658100%0.099%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds16581658100%0.099%KU312314.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds16581658100%0.099%KJ776791.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome16541654100%0.099%KX247646.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome16541654100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome16541654100%0.099%KX197192.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome16541654100%0.099%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome16541654100%0.099%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome16541654100%0.099%KX156774.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome16541654100%0.099%KX101060.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome16541654100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome16541654100%0.099%KU926309.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome16541654100%0.099%KU922923.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds16541654100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds16541654100%0.099%KU501216.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome16541654100%0.099%KU321639.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome16511651100%0.099%KU940224.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds16491649100%0.099%KU820897.2Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome16491649100%0.099%KX087102.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds16491649100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds16491649100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds16491649100%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome16491649100%0.099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome16491649100%0.099%KU707826.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds16491649100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds16491649100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds16491649100%0.099%KU365777.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds16491649100%0.099%KU312313.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds16451645100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds16451645100%0.099%KU955590.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds16451645100%0.099%KU729217.2Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome16451645100%0.099%KU681081.3Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds16451645100%0.099%KU312312.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome16361636100%0.099%KU744693.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome16311631100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds16311631100%0.099%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds16271627100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds16221622100%0.099%EU545988.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds1613161397%0.099%KU312315.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1602160299%0.098%KU681082.3Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds1599159996%0.099%KU646828.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds1590159096%0.099%KJ634273.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds1584158496%0.099%KU646827.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1516151690%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1510151090%0.099%KX173844.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds14981498100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1238123899%0.090%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1238123899%0.090%KF268948.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1214121499%0.089%KU955595.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1214121499%0.089%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1211121199%0.089%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1211121199%0.089%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1211121199%0.089%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds1211121199%0.089%HQ234501.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1193119399%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds1193119399%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1193119399%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds1193119399%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1180118099%0.088%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1178117899%0.088%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1177117799%0.088%KF268949.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1173117399%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds1173117399%0.088%HQ234500.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1169116999%0.088%KF383117.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1162116299%0.088%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1159115999%0.088%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1159115999%0.087%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1159115999%0.088%AY632535.2Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1106110699%0.087%KF383118.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence1011101199%0.084%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome874136782%0.099%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome870136281%0.099%KX101066.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds67267257%0.088%KF270886.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564538%0.099%KU985088.1
  23. niman
    LOCUS KX173841 927 bp RNA linear VRL 06-MAY-2016 DEFINITION Zika virus isolate 16Z11 envelope protein gene, partial cds. ACCESSION KX173841 VERSION KX173841.1 GI:1026288129 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 927) AUTHORS Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A., Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H., Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M., Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr. TITLE Transmission of Zika Virus by Platelet Transfusion JOURNAL Unpublished REFERENCE 2 (bases 1 to 927) AUTHORS Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A., Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H., Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M., Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr. TITLE Direct Submission JOURNAL Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho University Hospital, Federal University of Rio de Janeiro, Rio de Janeiro, RJ 21942-901, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 7.0.0; BioEdit v. 7.2.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..927 /organism="Zika virus" /mol_type="genomic RNA" /isolate="16Z11" /isolation_source="plasma" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="25-Jan-2016" CDS <1..>927 /codon_start=1 /product="envelope protein" /protein_id="ANC90421.1" /db_xref="GI:1026288130" /translation="LVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVT VMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQY VCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQH SGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTM NNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGA VHTALAGALEAEMDGAKGRLSSGHLKCRLKMDK" ORIGIN 1 ttggtcatga tactgctgat tgccccggca tatagcatca ggtgcatagg agtcagcaat 61 agggactttg tggaaggtat gtcaggtggg acttgggttg atgttgtctt ggaacatgga 121 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca 181 acagtcagca acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg 241 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact 301 caatatgtct gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt 361 ggcaaaggga gcctggtgac atgcgctaag tttgcatgct ccaagaaaat gaccgggaag 421 agcatccagc cagagaatct ggagtaccgg ataatgctgt cagttcatgg ctcccagcac 481 agtgggatga tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag 541 ataacgccca attcaccgag agccgaagcc accctggggg gttttggaag cctaggactt 601 gattgtgaac cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac 661 aagcactggt tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg 721 gcagacaccg gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggacgca 781 catgccaaaa ggcaaactgt cgtggttcta gggagtcaag aaggagcagt tcacacggcc 841 cttgctggag ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac 901 ttgaaatgtc gcctgaaaat ggataaa
  24. niman
    Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
  25. niman
    Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds16731673100%0.0100%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds16731673100%0.0100%KX173840.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome16631663100%0.099%KX262887.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome16631663100%0.099%KU870645.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome16581658100%0.099%KX253996.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds16581658100%0.099%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome16581658100%0.099%KX087101.2Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds16581658100%0.099%KX185891.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds16581658100%0.099%KU937936.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome16581658100%0.099%KX117076.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome16581658100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome16581658100%0.099%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds16581658100%0.099%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds16581658100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome16581658100%0.099%KU940228.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds16581658100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome16581658100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds16581658100%0.099%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome16581658100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome16581658100%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome16581658100%0.099%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds16581658100%0.099%KU729218.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome16581658100%0.099%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds16581658100%0.099%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome16581658100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds16581658100%0.099%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds16581658100%0.099%KU312314.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds16581658100%0.099%KJ776791.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome16541654100%0.099%KX247646.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome16541654100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome16541654100%0.099%KX197192.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome16541654100%0.099%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome16541654100%0.099%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome16541654100%0.099%KX156774.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome16541654100%0.099%KX101060.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome16541654100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome16541654100%0.099%KU926309.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome16541654100%0.099%KU922923.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds16541654100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds16541654100%0.099%KU501216.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome16541654100%0.099%KU321639.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome16511651100%0.099%KU940224.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds16491649100%0.099%KU820897.2Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome16491649100%0.099%KX087102.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds16491649100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds16491649100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds16491649100%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome16491649100%0.099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome16491649100%0.099%KU707826.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds16491649100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds16491649100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds16491649100%0.099%KU365777.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds16491649100%0.099%KU312313.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds16451645100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds16451645100%0.099%KU955590.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds16451645100%0.099%KU729217.2Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome16451645100%0.099%KU681081.3Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds16451645100%0.099%KU312312.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome16361636100%0.099%KU744693.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome16311631100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds16311631100%0.099%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds16271627100%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds16221622100%0.099%EU545988.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds1613161397%0.099%KU312315.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1602160299%0.098%KU681082.3Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds1599159996%0.099%KU646828.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds1590159096%0.099%KJ634273.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds1584158496%0.099%KU646827.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1516151690%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1510151090%0.099%KX173844.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds14981498100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1238123899%0.090%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1238123899%0.090%KF268948.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1214121499%0.089%KU955595.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1214121499%0.089%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1211121199%0.089%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1211121199%0.089%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1211121199%0.089%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds1211121199%0.089%HQ234501.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1193119399%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds1193119399%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1193119399%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds1193119399%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1180118099%0.088%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1178117899%0.088%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1177117799%0.088%KF268949.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1173117399%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds1173117399%0.088%HQ234500.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1169116999%0.088%KF383117.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1162116299%0.088%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1159115999%0.088%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1159115999%0.087%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1159115999%0.088%AY632535.2Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1106110699%0.087%KF383118.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence1011101199%0.084%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome874136782%0.099%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome870136281%0.099%KX101066.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds67267257%0.088%KF270886.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564538%0.099%KU985088.1
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