niman

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1852518525100%0.0100%KX197192.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1851118511100%0.099%KU321639.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1848918489100%0.099%KU509998.3Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1844418444100%0.099%KX051563.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1841118411100%0.099%KJ776791.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1840218402100%0.099%KU991811.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1839318393100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1839318393100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1839318393100%0.099%KU365779.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1838118381100%0.099%KX198135.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1838118381100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1838118381100%0.099%KU365780.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1837518375100%0.099%KU940228.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1837518375100%0.099%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1837518375100%0.099%KU647676.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1837518375100%0.099%KU365777.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1837218372100%0.099%KX156776.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1837218372100%0.099%KU501217.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183681836899%0.099%KU497555.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1836618366100%0.099%KX156774.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1836618366100%0.099%KU729217.2Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1836618366100%0.099%KU501216.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1836318363100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1836318363100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1836318363100%0.099%KU820897.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1836318363100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1836318363100%0.099%KU312312.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1835718357100%0.099%KU922960.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1835418354100%0.099%KU937936.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1835418354100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1835418354100%0.099%KU922923.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1835418354100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1834818348100%0.099%KX087101.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1834818348100%0.099%KU870645.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1834518345100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1834318343100%0.099%KU853012.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1833618336100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1833018330100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1833018330100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1832718327100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1832718327100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1832118321100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1831218312100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1831218312100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1830918309100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1830918309100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182821828299%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1822218222100%0.099%KU744693.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1820018200100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1806918069100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1776217762100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177621776299%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177151771598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1760717607100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1745217452100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164331643399%0.095%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1327513275100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1327513275100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1327213272100%0.089%KU720415.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1327013270100%0.089%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1326813268100%0.089%KF268950.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132661326699%0.089%HQ234498.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1326613266100%0.089%DQ859059.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1326313263100%0.089%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1325413254100%0.089%KU955592.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1325413254100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1325013250100%0.089%LC002520.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1324113729100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1323613236100%0.089%KU955591.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1323413234100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1323413234100%0.089%KU955594.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1321213212100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132051320599%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1319113191100%0.088%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1313313133100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1312613233100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131261312699%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1293112999100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128521285297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108411084197%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50561446487%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4971497127%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4944494427%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4655465525%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4646464625%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42351333975%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3434343418%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3216321617%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31221312174%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2870418495%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22771080665%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2048204811%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2021202111%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18401392578%0.099%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183818389%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183818389%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds175217529%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174817489%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174617469%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds174517459%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds174517459%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds174517459%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds174317439%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds165416549%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds165416549%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds160216028%0.099%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds152315238%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds151215128%0.099%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142014207%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135313537%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1310131010%0.088%AF013415.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds124012406%0.099%KU232300.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124012406%0.099%KT200609.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1180744942%0.099%KX101063.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1175778746%0.099%KX101065.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113011306%0.098%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1049735241%0.097%KX101062.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds102010208%0.087%AF372422.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101210125%0.099%KU867812.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds9919917%0.088%KF270887.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds984198164%0.070%EF158064.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9809807%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9759757%0.089%KF383026.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9719717%0.088%EU303241.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9669667%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9629627%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9629627%0.088%KF383029.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9579577%0.088%KF383033.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9399397%0.088%KF383039.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9399397%0.088%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9359357%0.088%KF383031.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome921201157%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds917196263%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome917198063%0.069%FJ753286.2Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds9069067%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds9029027%0.087%KF383043.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9019016%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9019016%0.088%KF383086.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8978977%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8938937%0.086%KF383042.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds886195067%0.069%EF158069.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8748744%0.099%KU978616.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8708706%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8708706%0.087%KF383085.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8668667%0.086%KF383040.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8658656%0.087%KF383106.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome863850651%0.089%KX101067.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8618616%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8618616%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8618616%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8568566%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8438436%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8388386%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8388386%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8348346%0.086%KF383099.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8348344%0.099%AB908162.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8298296%0.086%KF383098.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8148144%0.099%KU872850.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome809160959%0.068%KC754954.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8018016%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds7987986%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome791172953%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome787187054%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome769163157%0.068%EF429199.1Select seq gb|DQ176636.2|West Nile virus strain Madagascar-AnMg798, complete genome762152849%0.068%DQ176636.2Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome751169255%0.068%KM203863.1Select seq gb|EU068667.1|West Nile virus isolate SPU116-89 polyprotein gene, complete cds749170855%0.068%EU068667.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome738166655%0.068%KM203860.1Select seq gb|EF429197.1|West Nile virus SPU116/89, complete genome722167755%0.067%EF429197.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6996993%0.099%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome681176150%0.070%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome681176150%0.070%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome677174350%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6596596%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6576576%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6546546%0.080%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6486486%0.080%KF383091.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6456453%8e-18099%KU985088.1Select seq gb|FJ410201.1|Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome636157744%4e-17769%FJ410201.1Select seq gb|JQ686088.2|Dengue virus 2 strain JHA1, partial genome632149960%5e-17669%JQ686088.2Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome627159349%2e-17469%JQ048541.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome616162452%4e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome612164947%5e-17069%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds600161152%3e-16669%AF100462.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome596140058%3e-16569%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome596140058%3e-16569%FJ639710.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome594143542%1e-16468%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome594143942%1e-16468%GQ868633.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome589164547%5e-16369%KJ918750.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5855853%6e-16299%KX173842.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome578167248%9e-16068%EU529701.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome576152342%3e-15968%GU131887.1Select seq gb|KF955369.1|Dengue virus 2 isolate DENV-2/NI/BID-V1226/2007, complete genome574163450%1e-15868%KF955369.1Select seq gb|KF955368.1|Dengue virus 2 isolate DENV-2/NI/BID-V1222/2007, partial genome574129940%1e-15868%KF955368.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome574159348%1e-15868%JN819408.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome571162049%1e-15768%FJ850050.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome571163850%1e-15768%EU569702.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome569165648%5e-15768%EU482580.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome565164350%6e-15668%EU596483.1Select seq gb|EU482687.1|Dengue virus 2 isolate DENV-2/NI/BID-V574/2006, complete genome565163450%6e-15668%EU482687.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome560160945%3e-15468%JN819407.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome556158148%3e-15368%FJ898466.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%6e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|JQ922552.1|Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome535161145%1e-14668%JQ922552.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5295292%4e-14599%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5265262%5e-14499%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5265262%5e-14499%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5265262%5e-14499%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5025022%6e-13799%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds4994992%7e-13699%KJ680134.1Select seq gb|KF955392.1|Dengue virus 2 isolate DENV-2/NI/BID-V3001/2007, partial genome46685728%4e-12668%KF955392.1Select seq gb|KF955343.1|Dengue virus 2 isolate DENV-2/NI/BID-V1724/2007, partial genome46660922%4e-12668%KF955343.1Select seq gb|JQ922553.1|Dengue virus 2 isolate DENV-2/IND/803347/1980, complete genome428145646%1e-11468%JQ922553.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4214212%2e-11299%KU954085.1

LOCUS KX197192 10807 bp RNA linear VRL 06-MAY-2016 DEFINITION Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome. ACCESSION KX197192 VERSION KX197192.1 GI:1026288139 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10807) AUTHORS Donald,C.L., Brennan,B., Cumberworth,S.L., Cordiro,M.T., de Oliveira Franca,R.F., Pena,L.J., Wilkie,G.S., Filipe,Ad.S., Davis,C., Hughes,J., Varjak,M., Clark,J.J., Selinger,M., Owsianka,A., Patel,A.H., McLauchlan,J., Palmarini,M., Lindenbach,B.D., Biek,R., Schnettler,E. and Kohl,A. TITLE Full genome sequence including non-coding regions of Zika virus from a patient from Recife, Brazil JOURNAL Unpublished REFERENCE 2 (bases 1 to 10807) AUTHORS Donald,C.L., Brennan,B., Cumberworth,S.L., Cordiro,M.T., de Oliveira Franca,R.F., Pena,L.J., Wilkie,G.S., Filipe,Ad.S., Davis,C., Hughes,J., Varjak,M., Clark,J.J., Selinger,M., Owsianka,A., Patel,A.H., McLauchlan,J., Palmarini,M., Lindenbach,B.D., Biek,R., Schnettler,E. and Kohl,A. TITLE Direct Submission JOURNAL Submitted (05-MAY-2016) MRC - University of Glasgow Centre for Virus Research, Garscube Estate, Bearsden Road, Glasgow G61 1QH, UK COMMENT ##Assembly-Data-START## Assembly Method :: Bowtie v. 2; Tanoti v. 1 Coverage :: 5000 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10807 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/H.sapiens/Brazil/PE243/2015" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" /note="passage details: 3 in Vero 6" CDS 108..10379 /codon_start=1 /product="polyprotein" /protein_id="ANC90426.1" /db_xref="GI:1026288140" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDIVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWGGPQRLPVPVNELPHGWKAWGK SHFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDYSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATMGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLMAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 108..473 /product="capsid" mat_peptide 474..752 /product="propeptide" mat_peptide 753..977 /product="membrane" mat_peptide 978..2489 /product="envelope" mat_peptide 2490..3545 /product="NS1" mat_peptide 3546..4223 /product="NS2A" mat_peptide 4224..4613 /product="NS2B" mat_peptide 4614..6464 /product="NS3" mat_peptide 6465..6845 /product="NS4A" mat_peptide 6846..6914 /product="6K" mat_peptide 6915..7667 /product="NS4B" mat_peptide 7668..10376 /product="NS5" ORIGIN 1 agttgttgat ctgtgtgaat cagactgcga cagttcgagt ttgaagcgaa agctagcaac 61 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa 121 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 181 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 241 ggatggtctt ggcaattcta gcctttttga gattcacggc aatcaagcca tcactgggtc 301 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 361 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacggg 421 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 481 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 541 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 601 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 661 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 721 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta 781 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 841 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 901 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 961 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 1021 tgtcaggtgg gacttgggtt gatattgtct tggaacatgg aggttgtgtc accgtaatgg 1081 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1141 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1201 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1261 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agtctggtga 1321 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1381 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1441 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1501 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1561 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1621 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1681 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1741 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1801 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1861 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1921 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1981 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 2041 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2101 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2161 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2221 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2281 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2341 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2401 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2461 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2521 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2581 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2641 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2701 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2761 gatctgtaaa aaaccccatg tggggaggtc cacagagatt gcccgtgcct gtgaacgagc 2821 tgccccacgg ctggaaggct tgggggaaat cgcacttcgt cagagcagca aagacaaata 2881 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2941 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 3001 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3061 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3121 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3181 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3241 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3301 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3361 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3421 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3481 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3541 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3601 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3661 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3721 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3781 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3841 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3901 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3961 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 4021 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg 4081 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4141 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg gggctgctgt 4201 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4261 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4321 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4381 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4441 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4501 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4561 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4621 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4681 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4741 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4801 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4861 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4921 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4981 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 5041 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5101 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5161 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5221 gagttcttcc cgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5281 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5341 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5401 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5461 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5521 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5581 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5641 gagcctggag ctcaggcttt gattgggtga cggattattc tggaaaaaca gtttggtttg 5701 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5761 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5821 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5881 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5941 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 6001 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6061 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6121 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6181 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6241 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6301 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6361 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6421 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6481 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6541 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6601 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6661 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6721 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6781 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6841 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6901 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6961 taatgggaag gagagaggag ggggcaacca tgggattctc aatggacatt gacctgcggc 7021 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7081 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7141 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7201 taatgatagg ttgctactca caattaacgc ccctgaccct aatagtggcc atcattttgc 7261 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7321 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7381 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7441 tggcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7501 gggccctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7561 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7621 ctctaatcta cacagtgaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7681 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7741 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7801 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7861 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7921 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7981 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc 8041 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8101 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8161 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8221 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8281 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8341 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8401 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8461 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8521 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8581 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8641 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8701 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8761 cagaccccca agaaggtact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8821 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8881 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8941 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 9001 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9061 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9121 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9181 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9241 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9301 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9361 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9421 ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9481 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9541 tggaggctga ggaagtccta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9601 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9661 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9721 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9781 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9841 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9901 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9961 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 10021 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10081 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10141 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10201 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10261 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10321 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10381 caccaatctt aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10441 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10501 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10561 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10621 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggagacc 10681 ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc catgagtttc 10741 caccacgctg gccgccaggc acagatcgcc gaatagcggc ggccggtgtg gggaaatcca 10801 tgggtct

University of Glasgow releases full 2015 Zika sequence from Recife, Brazil, Brazil/PE243/2015. http://www.ncbi.nlm.nih.gov/nuccore/KX197192

Map Update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1852518525100%0.0100%KX198135.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1847118471100%0.099%KX156776.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1846518465100%0.099%KX156774.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1846218462100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1846218462100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1846218462100%0.099%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1845618456100%0.099%KU647676.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1843818438100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1843518435100%0.099%KU922923.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1841118411100%0.099%KU991811.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1840818408100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1840218402100%0.099%KJ776791.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1839318393100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1839318393100%0.099%KU365779.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1839318393100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1839018390100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1838418384100%0.099%KU729218.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1838118381100%0.099%KX197192.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1838118381100%0.099%KU365780.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183771837799%0.099%KU497555.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1837518375100%0.099%KU365777.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1837218372100%0.099%KU926309.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1836618366100%0.099%KU940228.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1836318363100%0.099%KU501217.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1836318363100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1836318363100%0.099%KU312312.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1835718357100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1835718357100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1835718357100%0.099%KU501216.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1835418354100%0.099%KU937936.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1835418354100%0.099%KU820898.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1835418354100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1834818348100%0.099%KX087101.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1834518345100%0.099%KU926310.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1833918339100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1833918339100%0.099%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1833918339100%0.099%KU870645.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1833618336100%0.099%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1833618336100%0.099%KU853013.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1833618336100%0.099%KU761564.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1833418334100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1831218312100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1830318303100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1830318303100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1830018300100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1830018300100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182731827399%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1819118191100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1815918159100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1806918069100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1776217762100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177621776299%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177301773098%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1760717607100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1745617456100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164331643399%0.095%HQ234499.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329013290100%0.089%KU955595.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1329013290100%0.089%KU720415.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1328813288100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1328413284100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1328413284100%0.089%KF268948.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132841328499%0.089%HQ234498.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1328113281100%0.089%KU955592.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1327913279100%0.089%DQ859059.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327713277100%0.089%KF268950.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1327213272100%0.089%KF383119.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1326813751100%0.089%KX198134.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1326813268100%0.089%LC002520.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1326313263100%0.089%KU955591.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1325213252100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1325213252100%0.089%KU955594.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1324813248100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1320913209100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1316013160100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1315813266100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131561315699%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1294513013100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128731287397%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108711087197%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50521444087%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496227%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4935493527%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4682468225%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4673467325%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261332375%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3440344018%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3211321117%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31191311574%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2847417195%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22621078665%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2075207511%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2017201711%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18461390278%0.0100%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183318339%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183318339%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds165416549%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds165416549%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds152315238%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds151215128%0.099%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds137913797%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds134813487%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134213427%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134213427%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1310131010%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124512456%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds123212326%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232298.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1184777546%0.099%KX101065.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1177743642%0.099%KX101063.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113011306%0.098%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1054733941%0.097%KX101062.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds102010208%0.087%AF372422.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101210125%0.099%KU867812.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds100010007%0.089%KF270887.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9809807%0.089%KF383022.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds980199264%0.070%EF158064.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9759757%0.089%KF383026.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9679677%0.088%EU303241.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9669667%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9629627%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9629627%0.088%KF383029.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9579577%0.088%KF383033.1Select seq gb|JX041632.1|West Nile virus strain Ig2266, complete genome944180058%0.069%JX041632.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9399397%0.088%KF383039.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9399397%0.088%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9359357%0.088%KF383031.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome915200957%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds913189665%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome913191665%0.069%FJ753286.2Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds9069067%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds9029027%0.087%KF383043.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9019016%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9019016%0.088%KF383086.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8978977%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8938937%0.086%KF383042.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds881196667%0.069%EF158069.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8708706%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8708706%0.087%KF383085.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8668667%0.086%KF383040.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8658654%0.099%KU978616.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8658656%0.087%KF383106.1Select seq gb|EF158063.1|St. Louis encephalitis virus strain CorAn 9124 polyprotein gene, partial cds863195360%0.069%EF158063.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8618616%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8618616%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8618616%0.087%KF383088.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome857850151%0.089%KX101067.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8568566%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8438436%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8388386%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8388386%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8348346%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8298296%0.086%KF383098.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8298294%0.099%AB908162.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8238234%0.099%KU872850.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome812155960%0.068%KC754954.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8018016%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds7987986%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome789171153%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome782186754%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome769162757%0.068%EF429199.1Select seq gb|DQ176636.2|West Nile virus strain Madagascar-AnMg798, complete genome760153048%0.068%DQ176636.2Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome747167454%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome733164654%0.068%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6936933%0.098%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome681175550%0.070%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome681175550%0.070%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome677173750%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6686686%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6666666%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6636636%0.081%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6576576%0.081%KF383091.1Select seq gb|JQ686088.2|Dengue virus 2 strain JHA1, partial genome643151860%3e-17969%JQ686088.2Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6416413%9e-17999%KU985088.1Select seq gb|KP406804.1|Dengue virus 2 isolate DENV-2/KBPV-VR-29, complete genome636149960%4e-17769%KP406804.1Select seq gb|FJ410201.1|Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome636158644%4e-17769%FJ410201.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome621159749%9e-17369%JQ048541.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome618142359%1e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome616164448%4e-17169%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds610161350%2e-16969%AF100462.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome603141658%2e-16769%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome603141658%2e-16769%FJ639710.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome600165347%3e-16669%KJ918750.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome594144542%1e-16468%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome594144842%1e-16468%GQ868633.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome592167746%4e-16468%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome590159946%1e-16369%JN819408.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5895893%5e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome583165946%2e-16168%EU482580.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome581162349%8e-16168%FJ850050.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome581163850%8e-16168%EU569702.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome576153242%3e-15968%GU131887.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome576164750%3e-15968%EU596483.1Select seq gb|EU482687.1|Dengue virus 2 isolate DENV-2/NI/BID-V574/2006, complete genome576164050%3e-15968%EU482687.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome572158248%4e-15868%FJ898466.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome567160745%2e-15668%JN819407.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%6e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|JQ922552.1|Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome542161446%7e-14968%JQ922552.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5355352%1e-146100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5295292%4e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5295292%4e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5295292%4e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5085082%1e-138100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds5025022%6e-13799%KJ680134.1Select seq gb|KF955392.1|Dengue virus 2 isolate DENV-2/NI/BID-V3001/2007, partial genome46184828%2e-12468%KF955392.1Select seq gb|JQ922553.1|Dengue virus 2 isolate DENV-2/IND/803347/1980, complete genome435146546%7e-11767%JQ922553.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254252%1e-11399%KU954085.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174172%2e-111100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174172%2e-111100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174172%2e-111100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174172%2e-111100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164162%7e-11199%KT381874.1

Map Update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1852518525100%0.0100%KX087101.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1852018520100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842018420100%0.099%KU365778.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1841118411100%0.099%KU937936.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1840818408100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1840818408100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1839318393100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1839318393100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1839018390100%0.099%KU365777.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1837518375100%0.099%KU509998.3Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1837518375100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1837218372100%0.099%KX056898.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837218372100%0.099%KJ776791.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1836618366100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1836618366100%0.099%KU761564.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1836318363100%0.099%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1836318363100%0.099%KU955590.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836318363100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1835718357100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835418354100%0.099%KU729218.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1834818348100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1834818348100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1834818348100%0.099%KU926309.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1834518345100%0.099%KU940228.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833918339100%0.099%KX156776.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833918339100%0.099%KU501217.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1833618336100%0.099%KX156774.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833618336100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833618336100%0.099%KU501216.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1833018330100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1833018330100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1833018330100%0.099%KU820897.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1832718327100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183271832799%0.099%KU497555.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1832718327100%0.099%KU527068.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1831818318100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1831818318100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831218312100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831218312100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830318303100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830318303100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828218282100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827318273100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827318273100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1826718267100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1826718267100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182491824999%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1816418164100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813718137100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803818038100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773517735100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176851768598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758017580100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742917429100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164201642099%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1333113331100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133261332699%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1331513315100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1331113311100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1331113311100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1330813308100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1330413304100%0.089%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1330413304100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329913299100%0.089%KU955595.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1329213292100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1329213292100%0.089%KU955594.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1329013290100%0.089%KU955592.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1327713765100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1327213272100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1325713257100%0.089%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1325013250100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1319613196100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1316713275100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131651316599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1299013058100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129001290097%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108771087797%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50471442787%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4980498027%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4953495327%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4641464125%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4632463225%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42171327775%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3443344318%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3214321417%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31101308374%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2861418495%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2682268214%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22681077465%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2048204811%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2021202111%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18401387178%0.099%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183318339%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183318339%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds165816589%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds165816589%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds151715178%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds150715078%0.099%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds134813487%0.099%KU985087.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134213427%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1315131510%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds123612366%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds122512256%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122312236%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121312136%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds120912096%0.099%KU232298.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120212026%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232289.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1186741642%0.099%KX101063.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232299.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1180776446%0.099%KX101065.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118011806%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311336%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds106810688%0.088%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1045733641%0.097%KX101062.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds100210028%0.086%AF372422.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds9969967%0.089%KF270887.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds984198364%0.070%EF158064.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9719717%0.089%KF383022.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9679677%0.088%EU303241.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9669667%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9579577%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9539537%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9489487%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9449447%0.088%KF383029.1Select seq gb|JX041632.1|West Nile virus strain Ig2266, complete genome935179858%0.069%JX041632.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9309307%0.087%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9269267%0.087%KF383031.1Select seq gb|GQ851605.1|West Nile virus strain G16146 polyprotein gene, complete cds926185254%0.069%GQ851605.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9219217%0.087%KF383028.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome921200957%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds917200060%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome917191465%0.069%FJ753286.2Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9069066%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9069066%0.088%KF383086.1Select seq gb|DQ256376.1|West Nile virus strain 804994, complete genome899179659%0.068%DQ256376.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds8978977%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds8938937%0.086%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8888887%0.086%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8848847%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds8838837%0.086%KF383035.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds881194867%0.069%EF158069.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8778774%0.099%KU978616.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8748746%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8748746%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8708706%0.087%KF383106.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome866848351%0.090%KX101067.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8658656%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8658656%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8658656%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8618616%0.087%KF383087.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8578577%0.085%KF383040.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8478476%0.087%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8438436%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8438436%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8388386%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8348346%0.086%KF383098.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8348344%0.099%AB908162.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8208204%0.099%KU872850.1Select seq gb|KM659877.1|Usutu virus strain Bonn, complete genome814170159%0.068%KM659877.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8078076%0.085%KF383084.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome803155760%0.068%KC754954.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds8018016%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome783172853%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome778178460%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome765163357%0.068%EF429199.1Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome738166655%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome724164655%0.067%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6936933%0.098%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome677175550%0.069%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome677175550%0.069%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome675173950%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6646646%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6636636%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6576576%0.081%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6546546%0.080%KF383091.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6416413%9e-17999%KU985088.1Select seq gb|JQ686088.2|Dengue virus 2 strain JHA1, partial genome641150660%9e-17969%JQ686088.2Select seq gb|FJ410201.1|Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome636158644%4e-17769%FJ410201.1Select seq emb|HG316482.1|Dengue virus type 1 complete genome, isolate KDH0030A630158151%2e-17569%HG316482.1Select seq gb|JN697058.1|Dengue virus 1 isolate DH/S1/05/152, complete genome630160446%2e-17569%JN697058.1Select seq gb|FJ882536.1|Dengue virus 1 isolate DENV-1/VN/BID-V2711/2006, complete genome630158144%2e-17569%FJ882536.1Select seq gb|FJ906728.1|Dengue virus 1 isolate DENV-1/VN/BID-V1852/2007, complete genome627155944%2e-17469%FJ906728.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6216213%9e-17399%KX062045.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome621159547%9e-17369%JQ048541.1Select seq gb|GU131725.1|Dengue virus 1 isolate DENV-1/VN/BID-V3903/2008, complete genome621156644%9e-17369%GU131725.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6166163%4e-17199%KX062044.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome616140959%4e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome614163848%1e-17069%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds609166749%6e-16969%AF100462.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome603145442%2e-16769%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome603145742%2e-16769%GQ868633.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome601139858%8e-16769%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome601139858%8e-16769%FJ639710.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome598175448%1e-16569%KJ918750.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5855853%6e-16299%KX173842.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome585154142%6e-16268%GU131887.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome581167946%8e-16168%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome580159947%3e-16068%JN819408.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5785783%9e-16099%KR815989.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome572165946%4e-15868%EU482580.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome571162050%1e-15768%FJ850050.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome571163451%1e-15768%EU569702.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome565155747%6e-15668%JN819407.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome565164351%6e-15668%EU596483.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome562157749%7e-15568%FJ898466.1Select seq gb|JQ922552.1|Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome540155344%2e-14868%JQ922552.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5365362%3e-14799%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5355352%1e-14699%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5315312%1e-14598%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5295292%4e-14599%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5265262%5e-14499%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5265262%5e-14499%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5265262%5e-14499%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5025022%6e-13799%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds4994992%7e-13699%KJ680134.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254252%1e-11399%KU954085.1

LOCUS KX087101 10764 bp ss-RNA linear VRL 19-APR-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome. ACCESSION KX087101 VERSION KX087101.1 GI:1020267435 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10764) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (18-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 258.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10764 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PRI/PRVABC59/2015" /isolate="V3/V2" /host="Homo sapiens" /db_xref="BEI:NR-50240" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Puerto Rico" /collection_date="Dec-2015" /note="passage details: V3/V2 (CDC/BEI); V# = number of passages in Vero cells" misc_feature 1..10764 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00005.MAIN" gene 73..10344 /gene="GP1" /locus_tag="A2G93_63481gpGP1" CDS 73..10344 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /codon_start=1 /product="genome polyprotein" /protein_id="AMZ03556.1" /db_xref="GI:1020267436" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMETIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVELQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYVATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 73..384 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 439..717 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein pr" mat_peptide 718..942 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 943..2454 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="envelope protein E" mat_peptide 2455..3510 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS1" mat_peptide 3511..4188 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2A" mat_peptide 4189..4578 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2B" mat_peptide 4579..6429 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS3" mat_peptide 6430..6810 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4A" mat_peptide 6811..6879 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein 2K" mat_peptide 6880..7632 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4B" mat_peptide 7633..10341 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 cgagtttgaa gcgaaagcta gcaacagtat caacaggttt tattttggat ttggaaacga 61 gagtttctgg tcatgaaaaa cccaaaaaag aaatccggag gattccggat tgtcaatatg 121 ctaaaacgcg gagtagcccg tgtgagcccc tttgggggct tgaagaggct gccagccgga 181 cttctgctgg gtcatgggcc catcaggatg gtcttggcga ttctagcctt tttgagattc 241 acggcaatca agccatcact gggtctcatc aatagatggg gttcagtggg gaaaaaagag 301 gctatggaaa caataaagaa gttcaagaaa gatctggctg ccatgctgag aataatcaat 361 gctaggaagg agaagaagag acgaggcgca gatactagtg tcggaattgt tggcctcctg 421 ctgaccacag ctatggcagc ggaggtcact agacgtggga gtgcatacta tatgtacttg 481 gacagaaacg atgctgggga ggccatatct tttccaacca cattggggat gaataagtgt 541 tatatacaga tcatggatct tggacacatg tgtgatgcca ccatgagcta tgaatgccct 601 atgctggatg agggggtgga accagatgac gtcgattgtt ggtgcaacac gacgtcaact 661 tgggttgtgt acggaacctg ccatcacaaa aaaggtgaag cacggagatc tagaagagct 721 gtgacgctcc cctcccattc caccaggaag ctgcaaacgc ggtcgcaaac ctggttggaa 781 tcaagagaat acacaaagca cttgattaga gtcgaaaatt ggatattcag gaaccctggc 841 ttcgcgttag cagcagctgc catcgcttgg cttttgggaa gctcaacgag ccaaaaagtc 901 atatacttgg tcatgatact gctgattgcc ccggcataca gcatcaggtg cataggagtc 961 agcaataggg actttgtgga aggtatgtca ggtgggactt gggttgatgt tgtcttggaa 1021 catggaggtt gtgtcaccgt aatggcacag gacaaaccga ctgtcgacat agagctggtt 1081 acaacaacag tcagcaacat ggcggaggta agatcctact gctatgaggc atcaatatca 1141 gacatggctt ctgacagccg ctgcccaaca caaggtgaag cctaccttga caagcaatca 1201 gacactcaat atgtctgcaa aagaacgtta gtggacagag gctggggaaa tggatgtgga 1261 ctttttggca aagggagcct ggtgacatgc gctaagtttg catgctccaa gaaaatgacc 1321 gggaagagca tccagccaga gaatctggag taccggataa tgctgtcagt tcatggctcc 1381 cagcacagtg ggatgatcgt taatgacaca ggacatgaaa ctgatgagaa tagagcgaaa 1441 gttgagataa cgcccaattc accgagagcc gaagccaccc tggggggttt tggaagccta 1501 ggacttgatt gtgaaccgag gacaggcctt gacttttcag atttgtatta cttgactatg 1561 aataacaagc actggttggt tcacaaggag tggttccacg acattccatt accttggcac 1621 gctggggcag acaccggaac tccacactgg aacaacaaag aagcactggt agagttcaag 1681 gacgcacatg ccaaaaggca aactgtcgtg gttctaggga gtcaagaagg agcagttcac 1741 acggcccttg ctggagctct ggaggctgag atggatggtg caaagggaag gctgtcctct 1801 ggccacttga aatgtcgcct gaaaatggat aaacttagat tgaagggcgt gtcatactcc 1861 ttgtgtactg cagcgttcac attcaccaag atcccggctg aaacactgca cgggacagtc 1921 acagtggagt tacagtacgc agggacagat ggaccttgca aggttccagc tcagatggcg 1981 gtggacatgc aaactctgac cccagttggg aggttgataa ccgctaaccc cgtaatcact 2041 gaaagcactg agaactctaa gatgatgctg gaacttgatc caccatttgg ggactcttac 2101 attgtcatag gagtcgggga gaagaagatc acccaccact ggcacaggag tggcagcacc 2161 attggaaaag catttgaagc cactgtgaga ggtgccaaga gaatggcagt cttgggagac 2221 acagcctggg actttggatc agttggaggc gctctcaact cattgggcaa gggcatccat 2281 caaatttttg gagcagcttt caaatcattg tttggaggaa tgtcctggtt ctcacaaatt 2341 ctcattggaa cgttgctgat gtggttgggt ctgaacacaa agaatggatc tatttccctt 2401 atgtgcttgg ccttaggggg agtgttgatc ttcttatcca cagccgtctc tgctgatgtg 2461 gggtgctcgg tggacttctc aaagaaggag acgagatgcg gtacaggggt gttcgtctat 2521 aacgacgttg aagcctggag ggacaggtac aagtaccatc ctgactcccc ccgtagattg 2581 gcagcagcag tcaagcaagc ctgggaagat ggtatctgcg ggatctcctc tgtttcaaga 2641 atggaaaaca tcatgtggag atcagtagaa ggggagctca acgcaatcct ggaagagaat 2701 ggagttcaac tgacggtcgt tgtgggatct gtaaaaaacc ccatgtggag aggtccacag 2761 agattgcccg tgcctgtgaa cgagctgccc cacggctgga aggcttgggg gaaatcgtat 2821 ttcgtcagag cagcaaagac aaataacagc tttgtcgtgg atggtgacac actgaaggaa 2881 tgcccactca aacatagagc atggaacagc tttcttgtgg aggatcatgg gttcggggta 2941 tttcacacta gtgtctggct caaggttaga gaagattatt cattagagtg tgatccagcc 3001 gttattggaa cagctgttaa gggaaaggag gctgtacaca gtgatctagg ctactggatt 3061 gagagtgaga agaatgacac atggaggctg aagagggccc atctgatcga gatgaaaaca 3121 tgtgaatggc caaagtccca cacattgtgg acagatggaa tagaagagag tgatctgatc 3181 atacccaagt ctttagctgg gccactcagc catcacaata ccagagaggg ctacaggacc 3241 caaatgaaag ggccatggca cagtgaagag cttgaaattc ggtttgagga atgcccaggc 3301 actaaggtcc acgtggagga aacatgtgga acaagaggac catctctgag atcaaccact 3361 gcaagcggaa gggtgatcga ggaatggtgc tgcagggagt gcacaatgcc cccactgtcg 3421 ttccgggcta aagatggctg ttggtatgga atggagataa ggcccaggaa agaaccagaa 3481 agcaacttag taaggtcaat ggtgactgca ggatcaactg atcacatgga ccacttctcc 3541 cttggagtgc ttgtgatcct gctcatggtg caggaagggc tgaagaagag aatgaccaca 3601 aagatcatca taagcacatc aatggcagtg ctggtagcta tgatcctggg aggattttca 3661 atgagtgacc tggctaagct tgcaattttg atgggtgcca ccttcgcgga aatgaacact 3721 ggaggagatg tagctcatct ggcgctgata gcggcattca aagtcagacc agcgttgctg 3781 gtatctttca tcttcagagc taattggaca ccccgtgaaa gcatgctgct ggccttggcc 3841 tcgtgtcttt tgcaaactgc gatctccgcc ttggaaggcg acctgatggt tctcatcaat 3901 ggttttgctt tggcctggtt ggcaatacga gcgatggttg ttccacgcac tgataacatc 3961 accttggcaa tcctggctgc tctgacacca ctggcccggg gcacactgct tgtggcgtgg 4021 agagcaggcc ttgctacttg cggggggttt atgctcctct ctctgaaggg aaaaggcagt 4081 gtgaagaaga acttaccatt tgtcatggcc ctgggactaa ccgctgtgag gctggtcgac 4141 cccatcaacg tggtgggact gctgttgctc acaaggagtg ggaagcggag ctggccccct 4201 agcgaagtac tcacagctgt tggcctgata tgcgcattgg ctggagggtt cgccaaggca 4261 gatatagaga tggctgggcc catggccgcg gtcggtctgc taattgtcag ttacgtggtc 4321 tcaggaaaga gtgtggacat gtacattgaa agagcaggtg acatcacatg ggaaaaagat 4381 gcggaagtca ctggaaacag tccccggctc gatgtggcgc tagatgagag tggtgatttc 4441 tccctggtgg aggatgacgg tccccccatg agagagatca tactcaaggt ggtcctgatg 4501 accatctgtg gcatgaaccc aatagccata ccctttgcag ctggagcgtg gtacgtatac 4561 gtgaagactg gaaaaaggag tggtgctcta tgggatgtgc ctgctcccaa ggaagtaaaa 4621 aagggggaga ccacagatgg agtgtacaga gtaatgactc gtagactgct aggttcaaca 4681 caagttggag tgggagttat gcaagagggg gtctttcaca ctatgtggca cgtcacaaaa 4741 ggatccgcgc tgagaagcgg tgaagggaga cttgatccat actggggaga tgtcaagcag 4801 gatctggtgt catactgtgg tccatggaag ctagatgccg cctgggatgg gcacagcgag 4861 gtgcagctct tggccgtgcc ccccggagag agagcgagga acatccagac tctgcccgga 4921 atatttaaga caaaggatgg ggacattgga gcggttgcgc tggattaccc agcaggaact 4981 tcaggatctc caatcctaga caagtgtggg agagtgatag gactttatgg caatggggtc 5041 gtgatcaaaa acgggagtta tgttagtgcc atcacccaag ggaggaggga ggaagagact 5101 cctgttgagt gcttcgagcc ctcgatgctg aagaagaagc agctaactgt cttagacttg 5161 catcctggag ctgggaaaac caggagagtt cttcctgaaa tagtccgtga agccataaaa 5221 acaagactcc gtactgtgat cttagctcca accagggttg tcgctgctga aatggaggag 5281 gcccttagag ggcttccagt gcgttatatg acaacagcag tcaatgtcac ccactctgga 5341 acagaaatcg tcgacttaat gtgccatgcc accttcactt cacgtctact acagccaatc 5401 agagtcccca actataatct gtatattatg gatgaggccc acttcacaga tccctcaagt 5461 atagcagcaa gaggatacat ttcaacaagg gttgagatgg gcgaggcggc tgccatcttc 5521 atgaccgcca cgccaccagg aacccgtgac gcatttccgg actccaactc accaattatg 5581 gacaccgaag tggaagtccc agagagagcc tggagctcag gctttgattg ggtgacggat 5641 cattctggaa aaacagtttg gtttgttcca agcgtgagga acggcaatga gatcgcagct 5701 tgtctgacaa aggctggaaa acgggtcata cagctcagca gaaagacttt tgagacagag 5761 ttccagaaaa caaaacatca agagtgggac tttgtcgtga caactgacat ttcagagatg 5821 ggcgccaact ttaaagctga ccgtgtcata gattccagga gatgcctaaa gccggtcata 5881 cttgatggcg agagagtcat tctggctgga cccatgcctg tcacacatgc cagcgctgcc 5941 cagaggaggg ggcgcatagg caggaatccc aacaaacctg gagatgagta tctgtatgga 6001 ggtgggtgcg cagagactga cgaagaccat gcacactggc ttgaagcaag aatgctcctt 6061 gacaatattt acctccaaga tggcctcata gcctcgctct atcgacctga ggccgacaaa 6121 gtagcagcca ttgagggaga gttcaagctt aggacggagc aaaggaagac ctttgtggaa 6181 ctcatgaaaa gaggagatct tcctgtttgg ctggcctatc aggttgcatc tgccggaata 6241 acctacacag atagaagatg gtgctttgat ggcacgacca acaacaccat aatggaagac 6301 agtgtgccgg cagaggtgtg gaccagacac ggagagaaaa gagtgctcaa accgaggtgg 6361 atggacgcca gagtttgttc agatcatgcg gccctgaagt cattcaagga gtttgccgct 6421 gggaaaagag gagcggcttt tggagtgatg gaagccctgg gaacactgcc aggacacatg 6481 acagagagat tccaggaagc cattgacaac ctcgctgtgc tcatgcgggc agagactgga 6541 agcaggcctt acaaagccgc ggcggcccaa ttgccggaga ccctagagac cataatgctt 6601 ttggggttgc tgggaacagt ctcgctggga atcttcttcg tcttgatgag gaacaagggc 6661 atagggaaga tgggctttgg aatggtgact cttggggcca gcgcatggct catgtggctc 6721 tcggaaattg agccagccag aattgcatgt gtcctcattg ttgtgttcct attgctggtg 6781 gtgctcatac ctgagccaga aaagcaaaga tctccccagg acaaccaaat ggcaatcatc 6841 atcatggtag cagtaggtct tctgggcttg attaccgcca atgaactcgg atggttggag 6901 agaacaaaga gtgacctaag ccatctaatg ggaaggagag aggagggggc aaccatagga 6961 ttctcaatgg acattgacct gcggccagcc tcagcttggg ccatctatgc tgccttgaca 7021 actttcatta ccccagccgt ccaacatgca gtgaccacct catacaacaa ctactcctta 7081 atggcgatgg ccacgcaagc tggagtgttg tttggcatgg gcaaagggat gccattctac 7141 gcatgggact ttggagtccc gctgctaatg ataggttgct actcacaatt aacacccctg 7201 accctaatag tggccatcat tttgctcgtg gcgcactaca tgtacttgat cccagggctg 7261 caggcagcag ctgcgcgtgc tgcccagaag agaacggcag ctggcatcat gaagaaccct 7321 gttgtggatg gaatagtggt gactgacatt gacacaatga caattgaccc ccaagtggag 7381 aaaaagatgg gacaggtgct actcatagca gtagccgtct ccagcgccat actgtcgcgg 7441 accgcctggg ggtgggggga ggctggggct ctgatcacag ccgcaacttc cactttgtgg 7501 gaaggctctc cgaacaagta ctggaactcc tctacagcca cttcactgtg taacattttt 7561 aggggaagtt acttggctgg agcttctcta atctacacag taacaagaaa cgctggcttg 7621 gtcaagagac gtgggggtgg aacaggagag accctgggag agaaatggaa ggcccgcttg 7681 aaccagatgt cggccctgga gttctactcc tacaaaaagt caggcatcac cgaggtgtgc 7741 agagaagagg cccgccgcgc cctcaaggac ggtgtggcaa cgggaggcca tgctgtgtcc 7801 cgaggaagtg caaagctgag atggttggtg gagcggggat acctgcagcc ctatggaaag 7861 gtcattgatc ttggatgtgg cagagggggc tggagttact acgtcgccac catccgcaaa 7921 gttcaagaag tgaaaggata cacaaaagga ggccctggtc atgaagaacc cgtgttggtg 7981 caaagctatg ggtggaacat agtccgtctt aagagtgggg tggacgtctt tcatatggcg 8041 gctgagccgt gtgacacgtt gctgtgtgac ataggtgagt catcatctag tcctgaagtg 8101 gaagaagcac ggacgctcag agtcctctcc atggtggggg attggcttga aaaaagacca 8161 ggagcctttt gtataaaagt gttgtgccca tacaccagca ctatgatgga aaccctggag 8221 cgactgcagc gtaggtatgg gggaggactg gtcagagtgc cactctcccg caactctaca 8281 catgagatgt actgggtctc tggagcgaaa agcaacacca taaaaagtgt gtccaccacg 8341 agccagctcc tcttggggcg catggacggg cctaggaggc cagtgaaata tgaggaggat 8401 gtgaatctcg gctctggcac gcgggctgtg gtaagctgcg ctgaagctcc caacatgaag 8461 atcattggta accgcattga aaggatccgc agtgagcacg cggaaacgtg gttctttgac 8521 gagaaccacc catataggac atgggcttac catggaagct atgaggcccc cacacaaggg 8581 tcagcgtcct ctctaataaa cggggttgtc aggctcctgt caaaaccctg ggatgtggtg 8641 actggagtca caggaatagc catgaccgac accacaccgt atggtcagca aagagttttc 8701 aaggaaaaag tggacactag ggtgccagac ccccaagaag gcactcgtca ggttatgagc 8761 atggtctctt cctggttgtg gaaagagcta ggcaaacaca aacggccacg agtctgcacc 8821 aaagaagagt tcatcaacaa ggttcgtagc aatgcagcat taggggcaat atttgaagag 8881 gaaaaagagt ggaagactgc agtggaagct gtgaacgatc caaggttctg ggctctagtg 8941 gacaaggaaa gagagcacca cctgagagga gagtgccaga gctgtgtgta caacatgatg 9001 ggaaaaagag aaaagaaaca aggggaattt ggaaaggcca agggcagccg cgccatctgg 9061 tatatgtggc taggggctag atttctagag ttcgaagccc ttggattctt gaacgaggat 9121 cactggatgg ggagagagaa ctcaggaggt ggtgttgaag ggctgggatt acaaagactc 9181 ggatatgtcc tagaagagat gagtcgtata ccaggaggaa ggatgtatgc agatgacact 9241 gctggctggg acacccgcat tagcaggttt gatctggaga atgaagctct aatcaccaac 9301 caaatggaga aagggcacag ggccttggca ttggccataa tcaagtacac ataccaaaac 9361 aaagtggtaa aggtccttag accagctgaa aaagggaaaa cagttatgga cattatttcg 9421 agacaagacc aaagggggag cggacaagtt gtcacttacg ctcttaacac atttaccaac 9481 ctagtggtgc aactcattcg gaatatggag gctgaggaag ttctagagat gcaagacttg 9541 tggctgctgc ggaggtcaga gaaagtgacc aactggttgc agagcaacgg atgggatagg 9601 ctcaaacgaa tggcagtcag tggagatgat tgcgttgtga agccaattga tgataggttt 9661 gcacatgccc tcaggttctt gaatgatatg ggaaaagtta ggaaggacac acaagagtgg 9721 aaaccctcaa ctggatggga caactgggaa gaagttccgt tttgctccca ccacttcaac 9781 aagctccatc tcaaggacgg gaggtccatt gtggttccct gccgccacca agatgaactg 9841 attggccggg cccgcgtctc tccaggggcg ggatggagca tccgggagac tgcttgccta 9901 gcaaaatcat atgcgcaaat gtggcagctc ctttatttcc acagaaggga cctccgactg 9961 atggccaatg ccatttgttc atctgtgcca gttgactggg ttccaactgg gagaactacc 10021 tggtcaatcc atggaaaggg agaatggatg accactgaag acatgcttgt ggtgtggaac 10081 agagtgtgga ttgaggagaa cgaccacatg gaagacaaga ccccagttac gaaatggaca 10141 gacattccct atttgggaaa aagggaagac ttgtggtgtg gatctctcat agggcacaga 10201 ccgcgcacca cctgggctga gaacattaaa aacacagtca acatggtgcg caggatcata 10261 ggtgatgaag aaaagtacat ggactaccta tccacccaag ttcgctactt gggtgaagaa 10321 gggtctacac ctggagtgct gtaagcacca atcttaatgt tgtcaggcct gctagtcagc 10381 cacagcttgg ggaaagctgt gcagcctgtg acccccccag gagaagctgg gaaaccaagc 10441 ctatagtcag gccgagaacg ccatggcacg gaagaagcca tgctgcctgt gagcccctca 10501 gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc aggatgggaa aagaaggtgg 10561 cgaccttccc cacccttcaa tctggggcct gaactggaga tcagctgtgg atctccagaa 10621 gagggactag tggttagagg agaccccccg gaaaacgcaa aacagcatat tgacgctggg 10681 aaagaccaga gactccatga gtttccacca cgctggccgc caggcacaga tcgccgaata 10741 gcggcggccg gtgtggggaa atcc

JCVI has generated a full Puerto Rico Zika sequence from December 2015 collection, PRI/PRVABC59/2015

Sequence map update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1852518525100%0.0100%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1852518525100%0.0100%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1843818438100%0.099%KU647676.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1842018420100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1841718417100%0.099%KU922923.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1839318393100%0.099%KU991811.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1839018390100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1838418384100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1837518375100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1837218372100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1836618366100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1836618366100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1836618366100%0.099%KU365779.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183591835999%0.099%KU497555.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1835418354100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1835418354100%0.099%KU365780.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1834818348100%0.099%KU940228.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1834818348100%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1834818348100%0.099%KU312312.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1834518345100%0.099%KU501217.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1834518345100%0.099%KU365778.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833918339100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833918339100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833918339100%0.099%KU501216.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1833618336100%0.099%KU926310.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833618336100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1833018330100%0.099%KX087101.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1832718327100%0.099%KU820898.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1832118321100%0.099%KU870645.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1831818318100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1831618316100%0.099%KU853012.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1831218312100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1831218312100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1830918309100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1830918309100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1829418294100%0.099%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1828518285100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1828218282100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1828218282100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182541825499%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1817318173100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814118141100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1805118051100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1774417744100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177441774499%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177121771298%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758917589100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1743417434100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1331513315100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1331113311100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1331113311100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1330813308100%0.089%KU720415.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1330413304100%0.089%KF268950.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133021330299%0.089%HQ234498.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329013290100%0.089%KU955595.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1329013290100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1328613286100%0.089%LC002520.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1328413284100%0.089%DQ859059.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1328113281100%0.089%KU955592.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1327013270100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1327013270100%0.089%KU955594.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1326313263100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1324813248100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1322713227100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1317313173100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1314913257100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131471314799%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1295413022100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128911289197%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108861088697%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50341442487%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496227%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4940494027%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4673467325%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4673467325%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261330675%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3434343418%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3205320517%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31131310274%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2852417095%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2691269114%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22531078165%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2075207511%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2021202111%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18461389178%0.0100%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183818389%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183818389%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds175217529%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174817489%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174617469%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds174517459%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds174517459%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds174517459%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds174317439%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds160216028%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142014207%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135313537%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1315131510%0.088%AF013415.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds124012406%0.099%KU232300.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124012406%0.099%KT200609.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1184778046%0.099%KX101065.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1177743842%0.099%KX101063.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311336%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds106810688%0.088%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1049731441%0.097%KX101062.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds102010208%0.087%AF372422.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds100010007%0.089%KF270887.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds989199564%0.070%EF158064.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9719717%0.089%KF383022.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9719717%0.088%EU303241.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9669667%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9579577%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9539537%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9539537%0.088%KF383029.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9489487%0.088%KF383033.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9309307%0.087%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9309307%0.087%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9269267%0.087%KF383031.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome924201657%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds922190265%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome922192065%0.069%FJ753286.2Select seq gb|EF158062.1|St. Louis encephalitis virus strain FL 79-411 polyprotein gene, partial cds922199758%0.069%EF158062.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|EF158058.1|St. Louis encephalitis virus strain Kern 217 polyprotein gene, partial cds921197158%0.069%EF158058.1Select seq gb|DQ525916.1|St. Louis encephalitis virus strain Kern217, complete genome921197158%0.069%DQ525916.1Select seq gb|EF158067.1|St. Louis encephalitis virus strain BeAn 247377 polyprotein gene, partial cds908213959%0.069%EF158067.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9069066%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9069066%0.088%KF383086.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds8978977%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds8938937%0.086%KF383043.1Select seq gb|FJ753287.2|St. Louis encephalitis virus strain 79V-2533, complete genome890181563%0.069%FJ753287.2Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8888887%0.086%KF383041.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds886196467%0.069%EF158069.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8848847%0.086%KF383042.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8748746%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8748746%0.087%KF383085.1Select seq gb|EF158063.1|St. Louis encephalitis virus strain CorAn 9124 polyprotein gene, partial cds872195560%0.069%EF158063.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8708706%0.087%KF383106.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8658654%0.099%KU978616.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8658656%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8658656%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8658656%0.087%KF383088.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome863849451%0.089%KX101067.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8618616%0.087%KF383087.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8578577%0.085%KF383040.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8478476%0.087%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8438436%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8438436%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8388386%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8348346%0.086%KF383098.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8258254%0.099%AB908162.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8238234%0.099%KU872850.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome809155160%0.068%KC754954.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8078076%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds8018016%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome783170253%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome782186754%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome765171750%0.068%EF429199.1Select seq gb|DQ176636.2|West Nile virus strain Madagascar-AnMg798, complete genome756152748%0.068%DQ176636.2Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome742166854%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome729164354%0.067%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6936933%0.098%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome672174650%0.069%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome672174650%0.069%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome668172850%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6646646%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6636636%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6576576%0.081%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6546546%0.080%KF383091.1Select seq gb|JQ686088.2|Dengue virus 2 strain JHA1, partial genome643151360%3e-17969%JQ686088.2Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6416413%9e-17999%KU985088.1Select seq gb|FJ432747.1|Dengue virus 1 isolate DENV-1/VN/BID-V1832/2007, complete genome639159544%3e-17869%FJ432747.1Select seq gb|FJ410232.1|Dengue virus 1 isolate DENV-1/VN/BID-V1890/2007, complete genome639159544%3e-17869%FJ410232.1Select seq gb|FJ410201.1|Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome636158644%4e-17769%FJ410201.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq emb|HG316482.1|Dengue virus type 1 complete genome, isolate KDH0030A630159051%2e-17569%HG316482.1Select seq gb|JN697058.1|Dengue virus 1 isolate DH/S1/05/152, complete genome630160846%2e-17569%JN697058.1Select seq gb|FJ882536.1|Dengue virus 1 isolate DENV-1/VN/BID-V2711/2006, complete genome630158144%2e-17569%FJ882536.1Select seq gb|FJ410257.1|Dengue virus 1 isolate DENV-1/VN/BID-V1925/2008, complete genome630152743%2e-17569%FJ410257.1Select seq gb|FJ410234.1|Dengue virus 1 isolate DENV-1/VN/BID-V1896/2007, complete genome630156843%2e-17569%FJ410234.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome627160450%2e-17469%JQ048541.1Select seq gb|FJ906728.1|Dengue virus 1 isolate DENV-1/VN/BID-V1852/2007, complete genome627155944%2e-17469%FJ906728.1Select seq gb|FJ432734.1|Dengue virus 1 isolate DENV-1/VN/BID-V1792/2007, complete genome627156844%2e-17469%FJ432734.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq gb|GU131725.1|Dengue virus 1 isolate DENV-1/VN/BID-V3903/2008, complete genome621156644%9e-17369%GU131725.1Select seq gb|FJ410250.1|Dengue virus 1 isolate DENV-1/VN/BID-V1917/2007, complete genome621157046%9e-17369%FJ410250.1Select seq gb|FJ410211.1|Dengue virus 1 isolate DENV-1/VN/BID-V1830/2007, complete genome621157544%9e-17369%FJ410211.1Select seq gb|FJ410204.1|Dengue virus 1 isolate DENV-1/VN/BID-V1809/2007, complete genome621157044%9e-17369%FJ410204.1Select seq gb|FJ410203.1|Dengue virus 1 isolate DENV-1/VN/BID-V1808/2007, complete genome621157044%9e-17369%FJ410203.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome618142059%1e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome616164553%4e-17169%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds610161752%2e-16969%AF100462.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome603141158%2e-16769%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome603141158%2e-16769%FJ639710.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome600165347%3e-16669%KJ918750.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome594144542%1e-16468%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome594144842%1e-16468%GQ868633.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome592167948%4e-16468%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome590160048%1e-16369%JN819408.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome583166148%2e-16168%EU482580.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome581162349%8e-16168%FJ850050.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome581163850%8e-16168%EU569702.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome576161645%3e-15968%JN819407.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome576153242%3e-15968%GU131887.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome576164750%3e-15968%EU596483.1Select seq gb|EU482687.1|Dengue virus 2 isolate DENV-2/NI/BID-V574/2006, complete genome576164050%3e-15968%EU482687.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome572158648%4e-15868%FJ898466.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%5e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|JQ922552.1|Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome542161446%7e-14968%JQ922552.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5295292%4e-14599%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5265262%5e-14499%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5265262%5e-14499%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5265262%5e-14499%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5025022%6e-13799%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds4994992%7e-13699%KJ680134.1Select seq gb|JQ922553.1|Dengue virus 2 isolate DENV-2/IND/803347/1980, complete genome435146146%7e-11767%JQ922553.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4214212%2e-11299%KU954085.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4124122%8e-11099%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4124122%8e-11099%KU926325.1

LOCUS KX087102 10661 bp ss-RNA linear VRL 19-APR-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome. ACCESSION KX087102 VERSION KX087102.1 GI:1020267437 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10661) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (18-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 184.5x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10661 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/COL/FLR/2015" /isolate="C1/C2" /host="Homo sapiens" /db_xref="BEI:NR-50183" /db_xref="taxon:64320" /lab_host="Aedes albopictus cells" /country="Colombia: Barranquilla" /collection_date="Dec-2015" /note="passage details: C1/C2 (Baylor College of Medicine/BEI); C# = number of passages in C6/36 cells" misc_feature 1..10661 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00006.MAIN" gene 91..10362 /gene="GP1" /locus_tag="A2G93_63482gpGP1" CDS 91..10362 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /codon_start=1 /product="genome polyprotein" /protein_id="AMZ03557.1" /db_xref="GI:1020267438" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 91..402 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 457..735 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="protein pr" mat_peptide 736..960 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 961..2472 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="envelope protein E" mat_peptide 2473..3528 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="nonstructural protein NS1" mat_peptide 3529..4206 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="nonstructural protein NS2A" mat_peptide 4207..4596 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="nonstructural protein NS2B" mat_peptide 4597..6447 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="nonstructural protein NS3" mat_peptide 6448..6828 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="nonstructural protein NS4A" mat_peptide 6829..6897 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="protein 2K" mat_peptide 6898..7650 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="nonstructural protein NS4B" mat_peptide 7651..10359 /gene="GP1" /locus_tag="A2G93_63482gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 aatcagactg cgacagttcg agtttgaagc gaaagctagc aacagtatca acaggtttta 61 ttttggattt ggaaacgaga gtttctggtc atgaaaaacc caaaaaagaa atccggagga 121 ttccggattg tcaatatgct aaaacgcgga gtagcccgtg tgagcccctt tgggggcttg 181 aagaggctgc cagccggact tctgctgggt catgggccca tcaggatggt cttggcgatt 241 ctagcctttt tgagattcac ggcaatcaag ccatcactgg gtctcatcaa tagatggggt 301 tcagtgggga aaaaagaggc tatggaaata ataaagaagt tcaagaaaga tctggctgcc 361 atgctgagaa taatcaatgc taggaaggag aagaagagac gaggcgcaga aactagtgtc 421 ggaattgttg gcctcctgct gaccacagct atggcagcgg aggtcactag acgtgggagt 481 gcatactata tgtacttgga cagaaacgat gctggggagg ccatatcttt tccaaccaca 541 ttggggatga ataagtgtta tatacagatc atggatcttg gacacatgtg tgatgccacc 601 atgagctatg aatgccctat gctggatgag ggggtggaac cagatgacgt cgattgttgg 661 tgcaacacga cgtcaacttg ggttgtgtac ggaacctgcc atcacaaaaa aggtgaagca 721 cggagatcta gaagagccgt gacgctcccc tcccattcca ctaggaagct gcaaacgcgg 781 tcgcaaacct ggttggaatc aagagaatac acaaagcact tgattagagt cgaaaattgg 841 atattcagga accctggttt cgctttagca gcagctgcca tcgcttggct tttgggaagc 901 tcaacgagcc aaaaagtcat atacttggtc atgatactgc tgattgcccc ggcatacagc 961 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 1021 gttgatgtcg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 1081 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 1141 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 1201 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 1261 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 1321 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 1381 ttgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 1441 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 1501 gggggctttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 1561 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 1621 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 1681 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 1741 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 1801 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 1861 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 1921 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1981 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 2041 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 2101 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 2161 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 2221 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 2281 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 2341 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 2401 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 2461 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgtggt 2521 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct 2581 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg 2641 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac 2701 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc 2761 atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag 2821 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggat 2881 ggtgacacac tgaaagaatg cccactcaaa catagagcat ggaacagctt tcttgtggag 2941 gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga agattattca 3001 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt 3061 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat 3121 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata 3181 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc 3241 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg 3301 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca 3361 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc 3421 acaatgcccc cactgtcgtt ctgggctaaa gatggctgtt ggtatggaat ggagataagg 3481 cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg atcaactgat 3541 cacatggatc acttctccct tggagtgctt gtgattctgc tcatggtgca ggaagggctg 3601 aagaagagaa tgaccacaaa gatcatcata agcacatcaa tggcagtgct ggtagctatg 3661 atcctgggag gattttcaat gagtgacctg gctaagcttg caatcttgat gggtgccacc 3721 ttcgcggaaa tgaacactgg aggagatgta gctcatctgg cgctgatagc ggcattcaaa 3781 gtcagaccag cgttgctggt atccttcatc ttcagagcta attggacacc ccgtgaaagc 3841 atgctgctgg ccttggcctc gtgtcttttg caaactgcga tctccgcctt ggagggcgac 3901 ctgatggttc tcatcaatgg ttttgctttg gcctggttgg caatacgagc gatggttgtt 3961 ccacgcactg acaacatcac cttggcaatc ctggctgctc tgacaccact ggcccggggc 4021 acactgcttg tggcgtggag agcaggcctt gctacttgcg gggggtttat gctcctctct 4081 ctgaagggaa aaggcagtgt gaagaagaac ttaccatttg tcatggccct gggactaacc 4141 gctgtgaggc tggtcgaccc catcaacgtg gtgggactgc tgttgctcac aaggagtggg 4201 aagcggagct ggccccctag cgaagtactc acagctgttg gcctgatatg cgcattggct 4261 ggagggttcg ccaaggcaga tatagagatg gctgggccca tggccgcggt tggtctgcta 4321 attgtcagtt acgtggtctc aggaaagagt gtggacatgt acattgaaag agcaggtgac 4381 atcacatggg aaaaagatgc ggaagtcact ggaaacagtc cccggctcga tgtggcgcta 4441 gatgagagtg gtgatttctc cctggtggag gatgacggtc cccccatgag agagatcata 4501 ctcaaggtgg tcctgatgac catctgtggc atgaacccaa tagccatacc ctttgcagct 4561 ggagcgtggt acgtatacgt gaagactgga aaaaggagtg gtgcgctatg ggatgtgcct 4621 gctcccaagg aagtaaaaaa gggggagacc acagatggag tgtacagagt aatgactcgt 4681 agactgctag gttcaacaca agttggagtg ggagttatgc aagagggggt ctttcacact 4741 atgtggcacg tcacaaaagg atccgcgctg agaagcggtg aagggagact tgatccatac 4801 tggggagatg tcaagcagga tctggtgtca tactgtggtc catggaagct agatgccgcc 4861 tgggacgggc acagcgaggt gcagctcttg gccgtgcccc ccggagagag agcgaggaac 4921 atccagactc tgcccggaat atttaagaca aaggatgggg acattggagc ggttgcgctg 4981 gattacccag caggaacttc aggatctcca atcctagaca agtgtgggag agtgatagga 5041 ctttatggca atggggtcgt gatcaaaaat gggagttatg ttagtgccat cacccaaggg 5101 aggagggagg aagagactcc tgttgagtgc ttcgagcctt cgatgctgaa gaagaagcag 5161 ctaactgtct tagacttgca tcctggagct gggaaaacca ggagagttct tcctgaaata 5221 gtccgtgaag ccataaaaac aagactccgt actgtgatct tagctccaac cagggttgtc 5281 gctgctgaaa tggaggaagc ccttagaggg cttccagtgc gttatatgac aacagcagtc 5341 aatgtcaccc actctggaac agaaatcgtc gacttaatgt gccatgccac cttcacttca 5401 cgtctactac agccaatcag agtccccaac tataatctgt atattatgga tgaggcccac 5461 ttcacagatc cctcaagtat agcagcaaga ggatacattt caacaagggt tgagatgggc 5521 gaggcggctg ccatcttcat gaccgccacg ccaccaggaa cccgtgacgc atttccggac 5581 tccaactcac caattatgga caccgaagtg gaagtcccag agagagcctg gagctcaggc 5641 tttgattggg tgacggatca ttctggaaaa acagtttggt ttgttccaag cgtgaggaac 5701 ggcaatgaga tcgcagcttg tctgacaaag gctggaaaac gggtcataca gctcagcaga 5761 aagacttttg agacagagtt ccagaaaaca aaacatcaag agtgggactt tgtcgtgaca 5821 actgacattt cagagatggg cgccaacttt aaagctgacc gtgtcataga ttccaggaga 5881 tgcctaaagc cggtcatact tgatggcgag agagtcattc tggctggacc catgcctgtc 5941 acacatgcca gcgctgccca gaggaggggg cgcataggca ggaatcccaa taaacctgga 6001 gatgagtatc tgtatggagg tgggtgcgca gagactgacg aagaccatgc acactggctt 6061 gaagcaagaa tgctccttga caatatttac ctccaagatg gcctcatagc ctcgctctat 6121 cgacctgagg ccgacaaagt agcagccatt gagggagagt tcaagcttag gacggagcaa 6181 aggaagacct ttgtggaact catgaaaaga ggagatcttc ctgtttggct ggcctatcag 6241 gttgcatctg ccggaataac ctacacagat agaagatggt gctttgatgg cacgaccaac 6301 aacaccataa tggaagacag tgtgccggca gaggtgtgga ccagacacgg agagaaaaga 6361 gtgctcaaac cgaggtggat ggacgccaga gtttgttcag atcatgcggc cctgaagtca 6421 ttcaaggagt ttgccgctgg gaaaagagga gcggcttttg gagtgatgga agccctggga 6481 acactgccag gacacatgac agagagattc caggaagcca ttgacaacct cgctgtgctc 6541 atgcgggcag agactggaag caggccttac aaagccgcgg cggcccaatt gccggagacc 6601 ctagagacca ttatgctttt ggggttgctg ggaacagtct cgttgggaat ctttttcgtc 6661 ttgatgagga acaagggcat agggaagatg ggctttggaa tggtgactct tggggccagc 6721 gcatggctca tgtggctctc ggaaattgag ccagccagaa ttgcatgtgt cctcattgtt 6781 gtgttcctat tgctggtggt gctcatacct gagccagaaa agcaaagatc tccccaggac 6841 aaccaaatgg caatcatcat catggtagca gtaggtcttc tgggcttgat taccgccaat 6901 gaactcggat ggttggagag aacaaagagt gacctaagcc atctaatggg aaggagagag 6961 gagggggcaa ccataggatt ctcaatggac attgacctgc ggccagcctc agcttgggcc 7021 atctatgctg ccttgacaac tttcattacc ccagccgtcc aacatgcagt gaccacttca 7081 tacaacaact actccttaat ggcgatggcc acgcaagctg gagtgttgtt tggtatgggc 7141 aaagggatgc cattctacgc atgggacttt ggagtcccgc tgctaatgat aggttgctac 7201 tcacaattaa cacccctgac cctaatagtg gccatcattt tgctcgtggc gcactacatg 7261 tacttgatcc cagggctgca ggcagcagct gcgcgtgctg cccagaagag aacggcagct 7321 ggcatcatga agaaccctgt tgtggatgga atagtggtga ctgacattga cacaatgaca 7381 attgaccccc aagtggagaa aaagatggga caggtgctac tcatagcagt agccgtctcc 7441 agcgccatac tgtcgcggac cgcctggggg tggggggagg ctggggccct gatcacagcc 7501 gcaacttcca ctttgtggga aggctctccg aacaagtact ggaactcctc tacagccact 7561 tcactgtgta acatttttag gggaagttac ttggctggag cttctctaat ctacacagta 7621 acaagaaacg ctggcttggt caagagacgt gggggtggaa caggagagac cctgggagag 7681 aaatggaagg cccgcttgaa ccagatgtcg gccctggagt tctactccta caaaaagtca 7741 ggcatcaccg aggtgtgcag agaagaggcc cgccgcgccc tcaaggacgg tgtggcaacg 7801 ggaggccatg ctgtgtcccg aggaagtgca aagctgagat ggttggtgga gcggggatac 7861 ctgcagccct atggaaaggt cattgatctt ggatgtggca gagggggctg gagttactac 7921 gccgccacca tccgcaaagt tcaagaagtg aaaggataca caaaaggagg ccctggtcat 7981 gaagaacccg tgttggtgca aagctatggg tggaacatag tccgtcttaa gagtggggtg 8041 gacgtctttc atatggcggc tgagccgtgt gacacgttgc tgtgtgacat aggtgagtca 8101 tcatctagtc ctgaagtgga agaagcacgg acgctcagag tcctctccat ggtgggggat 8161 tggcttgaaa aaagaccagg agccttttgt ataaaagtgt tgtgcccata caccagcact 8221 atgatggaaa ccctggagcg actgcagcgt aggtatgggg gaggactggt cagagtgcca 8281 ctctcccgca actctacaca tgagatgtac tgggtctctg gagcgaaaag caacaccata 8341 aaaagtgtgt ccaccacgag ccagctcctc ttggggcgca tggacgggcc taggaggcca 8401 gtgaaatatg aggaggatgt gaatctcggc tctggcacgc gggctgtggt aagctgcgct 8461 gaagctccca acatgaagat cattggtaac cgcattgaaa ggatccgcag tgagcacgcg 8521 gaaacgtggt tctttgacga gaaccaccca tataggacat gggcttacca tggaagctat 8581 gaggccccca cacaagggtc agcgtcctct ctaataaacg gggttgtcag gctcctgtca 8641 aaaccctggg atgtggtgac tggagtcaca ggaatagcca tgaccgacac cacaccgtat 8701 ggtcagcaaa gagttttcaa ggaaaaagtg gacactaggg tgccagaccc ccaagaaggc 8761 actcgtcagg ttatgagcat ggtctcttcc tggttgtgga aagagctagg caaacacaaa 8821 cggccacgag tctgtaccaa agaagagttc atcaacaagg tgcgtagcaa tgcagcatta 8881 ggggcaatat ttgaagagga aaaagagtgg aagactgcag tggaagctgt gaacgatcca 8941 aggttctggg ctctagtgga caaggaaaga gagcaccacc tgagaggaga gtgccagagt 9001 tgtgtgtaca acatgatggg aaaaagagaa aagaaacaag gggaatttgg aaaggccaag 9061 ggcagccgcg ccatctggta tatgtggcta ggggctagat ttctagagtt cgaagccctt 9121 ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg tgttgaaggg 9181 ctgggattac aaagactcgg atatgtccta gaagagatga gtcgcatacc aggaggaagg 9241 atgtatgcag atgacactgc tggctgggac acccgcatta gcaggtttga tctggagaat 9301 gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt ggccataatc 9361 aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa agggaaaaca 9421 gttatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt cacttacgct 9481 cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc tgaggaagtt 9541 ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa ctggttgcag 9601 agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg cgttgtgaag 9661 ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg aaaagttagg 9721 aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga agttccgttt 9781 tgctcccacc acttcaacaa gctccatctc aaggacggga ggtccattgt ggttccctgc 9841 cgccaccaag atgaactgat tggccgggcc cgcgtctctc caggggcggg atggagcatc 9901 cgggagactg cttgcctagc aaaatcatat gcgcaaatgt ggcagctcct ttatttccac 9961 agaagggacc tccgactgat ggccaatgcc atttgttcat ctgtgccagt tgactgggtt 10021 ccaactggga gaactacctg gtcaatccat ggaaagggag aatggatgac cactgaagac 10081 atgcttgtgg tgtggaacag agtgtggatt gaggagaacg accacatgga agacaagacc 10141 ccagttgcga aatggacaga cattccctat ttgggaaaaa gggaagactt gtggtgtgga 10201 tctctcatag ggcacagacc gcgcaccacc tgggctgaga acattaaaaa cacagtcaac 10261 atggtgcgca ggatcatagg tgatgaagaa aagtacatgg actacctatc cacccaagtt 10321 cgctacttgg gtgaagaagg gtctacacct ggagtgctgt aagcaccaat cttaatgttg 10381 tcaggcctgc tagtcagcca cagcttgggg aaagctgtgc agcctgtgac ccccccagga 10441 gaagctggga aaccaagcct atagtcaggc cgagaacgcc atggcacgga agaagccatg 10501 ctgcctgtga gcccctcaga ggacactgag tcaaaaaacc ccacgcgctt ggaggcgcag 10561 gatgggaaaa gaaggtggcg accttcccca cccttcaatc tggggcctga actggagatc 10621 agctgtggat ctccagaaga gggactagtg gttagaggag a

LOCUS KX198135 10709 bp ss-RNA linear VRL 06-MAY-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome. ACCESSION KX198135 VERSION KX198135.1 GI:1026288143 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10709) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (05-MAY-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 250.9x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10709 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016" /host="Homo sapiens" /db_xref="BEI:NR-50210" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Panama" /collection_date="2016" /note="passage history: V4; V# = number of passages in Vero cells" misc_feature 1..10709 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00007.MAIN" gene 79..10350 /gene="GP1" /locus_tag="A2G93_63483gpGP1" CDS 79..10350 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /codon_start=1 /product="polyprotein" /protein_id="ANC90428.1" /db_xref="GI:1026288144" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 79..390 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 445..723 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="protein pr" mat_peptide 724..948 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 949..2460 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="envelope protein E" mat_peptide 2461..3516 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS1" mat_peptide 3517..4194 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS2A" mat_peptide 4195..4584 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS2B" mat_peptide 4585..6435 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS3" mat_peptide 6436..6816 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS4A" mat_peptide 6817..6885 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="protein 2K" mat_peptide 6886..7638 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS4B" mat_peptide 7639..10347 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg 61 aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc 121 aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca 181 gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg 241 agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa 301 aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata 361 atcaatgcta ggaaggagaa gaagagacga ggcgcagaaa ctagtgtcgg aattgttggc 421 ctccttctga ccacagctat ggcagcggag gtcactagac gtgggagtgc atactatatg 481 tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat 541 aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa 601 tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg 661 tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga 721 agagccgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg 781 ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat attcaggaac 841 cctggtttcg ctttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa 901 aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat caggtgcata 961 ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc 1021 ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag 1081 ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca 1141 atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag 1201 caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg gggaaatgga 1261 tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa 1321 atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgtt gtcagttcat 1381 ggctcccagc acagtgggat gattgttaat gacacaggac atgaaactga tgagaataga 1441 gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga 1501 agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg 1561 actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct 1621 tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag 1681 ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca 1741 gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg 1801 tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca 1861 tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg 1921 acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag 1981 atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc taaccccgta 2041 atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac 2101 tcttacattg tcataggagt cggggagaag aagatcaccc accactggca caggagtggc 2161 agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg 2221 ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc 2281 atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca 2341 caaattctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt 2401 tcccttatgt gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct 2461 gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgtggtac aggggtgttc 2521 gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt 2581 agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt 2641 tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaacgc aatcctggaa 2701 gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt 2761 ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa 2821 tcgtacttcg tcagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg 2881 aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc 2941 ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat 3001 ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac 3061 tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg 3121 aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat 3181 ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag agagggctac 3241 aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc 3301 ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca 3361 accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca 3421 ctgtcgttct gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa 3481 ccagaaagca acttagtaag gtcaatggtg actgcaggat caactgatca catggatcac 3541 ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg 3601 accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga 3661 ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg 3721 aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg 3781 ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc 3841 ttggcctcgt gtcttttgca aactgcgatc tccgccttgg agggcgacct gatggttctc 3901 atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgac 3961 aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg 4021 gcgtggagag caggccttgc cacttgcggg gggtttatgc tcctctctct gaagggaaaa 4081 ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg 4141 gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg 4201 ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc 4261 aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat tgtcagttac 4321 gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa 4381 aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt 4441 gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact caaggtggtc 4501 ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac 4561 gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa 4621 gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt 4681 tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc 4741 acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc 4801 aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac 4861 agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg 4921 cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca 4981 ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat 5041 ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa 5101 gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta 5161 gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagcc 5221 ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg 5281 gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccac 5341 tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag 5401 ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt cacagatccc 5461 tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc 5521 atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca 5581 attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg 5641 acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc 5701 gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag 5761 acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac tgacatttca 5821 gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg 5881 gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc 5941 gctgcccaga ggagggggcg cataggcagg aatcccaata aacctggaga tgagtatctg 6001 tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg 6061 ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc 6121 gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt 6181 gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc 6241 ggaataacct acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg 6301 gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg 6361 aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt 6421 gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga 6481 cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag 6541 actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt 6601 atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac 6661 aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg 6721 tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctattg 6781 ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca 6841 atcatcatca tggtagcagt aggtcttctg ggcttgatta ccgccaatga actcggatgg 6901 ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga gggggcaacc 6961 ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc 7021 ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata caacaactac 7081 tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca 7141 ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgttactc acaattaaca 7201 cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca 7261 gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag 7321 aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa 7381 gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg 7441 tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact 7501 ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac 7561 atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct 7621 ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc 7681 cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag 7741 gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct 7801 gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat 7861 ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc 7921 cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg 7981 ttggtgcaaa gctatgggtg gaacatagtc cgtcttaaga gtggggtgga cgtctttcat 8041 atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc atctagtcct 8101 gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa 8161 agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc 8221 ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac 8281 tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa aagtgtgtcc 8341 accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag 8401 gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac 8461 atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc 8521 tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca 8581 caagggtcag cgtcctctct aataaacggg gttgtcaggc tcctgtcaaa accctgggat 8641 gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga 8701 gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt 8761 atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc 8821 tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt 8881 gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct 8941 ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac 9001 atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc 9061 atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac 9121 gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa 9181 agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat 9241 gacactgctg gctgggacac ccgcattagc aggtttgatc tggagaatga agctctaatc 9301 accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac 9361 caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt 9421 atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct taacacattt 9481 accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa 9541 gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg 9601 gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat 9661 aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa 9721 gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccat 9781 ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat 9841 gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct 9901 tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc 9961 cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga 10021 actacctggt caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg 10081 tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc agttgcgaaa 10141 tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg 10201 cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg 10261 atcataggtg atgaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt 10321 gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggcctgcta 10381 gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa 10441 ccaagcctat agtcaggccg agagcgccat ggcacggaag aagccatgct gcctgtgagc 10501 ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga 10561 aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag ctgtggatct 10621 ccagaagagg gactagtggt tagaggagac cccccggaaa acgcaaaaca gcatattgac 10681 gctgggaaag accagagact ccatgagtt

JCVI has released a full 2016 Panama sequence from a case, PAN/BEI-259634_V4/2016,

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n Number of Zika Cases in California May 6, 2016 The following table provides the number of travel-associated cases of Zika in California residents in 2015 and 2016. CDPH is following CDC testing guidelines. This table is updated every Friday. As of May 6, 2016, there have been 45 travel-associated cases of Zika in California. • Total: 45 • Pregnant: 8* • Sexually transmitted: 1 Cases of Zika in California, 2015-2016§ (as of May 6, 2016) County Travel-associated cases¥ Locally acquired cases† Alameda 4 0 Contra Costa 3 0 Los Angeles 12 0 Napa 1 0 Orange 2 0 San Bernardino 2 0 San Diego 11** 0 San Francisco 2 0 San Joaquin 2 0 San Mateo 2 0 Santa Clara 1 0 Sonoma 1 0 Yolo 2 0 Total 45 0 https://www.cdph.ca.gov/HealthInfo/discond/Documents/TravelAssociatedCasesofZikaVirusinCA.pdf

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May 6, 2016 Department of Health Daily Zika UpdateThree New Travel-Related Cases TodayContact:Communications [email protected](850) 245-4111 Tallahassee, Fla. — In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the Florida Department of Health will issue a Zika virus update each week day at 2 p.m. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. There are three new travel-related cases today, with one in Seminole County and two in Miami-Dade County. Of the cases confirmed in Florida, four cases are still exhibiting symptoms. According to the CDC, symptoms associated with the Zika virus last between seven to 10 days. Based on CDC guidance, several pregnant women who have traveled to countries with local-transmission of Zika have received antibody testing, and of those, seven have tested positive for the Zika virus. The CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. It is recommended that women who are pregnant or thinking of becoming pregnant postpone travel to Zika affected areas. County Number of Cases (all travel related) Alachua 4 Brevard 2 Broward 15 Clay 1 Collier 1 Hillsborough 3 Lee 4 Martin 1 Miami-Dade 42 Orange 6 Osceola 4 Palm Beach 7 Pasco 1 Polk 3 Santa Rosa 1 Seminole 2 St. Johns 1 Cases involving pregnant women* 7 Total 105 *Counties of pregnant women will not be shared. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 1,634 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. All cases are travel-associated. There have been no locally-acquired cases of Zika in Florida. For more information on the Zika virus, click here. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. More Information on DOH action on Zika: On Feb. 3, Governor Scott directed the State Surgeon General to issue a Declaration of Public Health Emergency for the counties of residents with travel-associated cases of Zika.There have been 17 counties included in the declaration– Alachua, Brevard, Broward, Clay, Collier, Hillsborough, Lee, Martin, Miami-Dade, Orange, Osceola, Palm Beach, Pasco, Polk, Santa Rosa, Seminole and St. Johns – and will be updated as needed. DOH encourages Florida residents and visitors to protect themselves from all mosquito-borne illnesses by draining standing water; covering their skin with repellent and clothing; and covering windows with screens.DOH has a robust mosquito-borne illness surveillance system and is working with the CDC, the Florida Department of Agriculture and Consumer Services and local county mosquito control boards to ensure that the proper precautions are being taken to protect Florida residents and visitors.On April 6, Governor Rick Scott and Interim State Surgeon General Dr. Celeste Philip hosted a conference call with Florida Mosquito Control Districts to discuss ongoing preparations to fight the possible spread of the Zika virus in Florida. There were 74 attendees on the call.Florida currently has the capacity to test 6,477 people for active Zika virus and 1,912 for Zika antibodies.Federal Guidance on Zika: According to the CDC, Zika illness is generally mild with a rash, fever and joint pain. CDC researchers have concluded that Zika virus is a cause of microcephaly and other birth defects.The FDA released guidance regarding donor screening, deferral and product management to reduce the risk of transfusion-transmission of Zika virus. Additional information is available on the FDA website here.The CDC has put out guidance related to the sexual transmission of the Zika virus. This includes the CDC recommendation that if you have traveled to a country with local transmission of Zika you should abstain from unprotected sex.For more information on Zika virus, click here. About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health please visit www.FloridaHealth.gov. http://www.floridahealth.gov/newsroom/2016/05/050616-zika-update.html

County Number of Cases (all travel related) Alachua 4 Brevard 2 Broward 15 Clay 1 Collier 1 Hillsborough 3 Lee 4 Martin 1 Miami-Dade 42 Orange 6 Osceola 4 Palm Beach 7 Pasco 1 Polk 3 Santa Rosa 1 Seminole 2 St. Johns 1 Cases involving pregnant women* 7 Total 105

Zika Virus – May 6, 2016. Texas has had 32 confirmed cases of Zika virus disease. Of those, 31 were in travelers who were infected abroad and diagnosed after they returned home; one of those travelers was a pregnant woman. One case involved a Dallas County resident who had sexual contact with someone who acquired the Zika infection while traveling abroad. Case counts by county: Bexar – 3Dallas – 6Denton – 1Fort Bend – 2Grayson – 1Harris – 12Tarrant – 3Travis – 2Val Verde – 1 Wise – 1