niman

Sequence Map Update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1846218462100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1846218462100%0.099%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1843818438100%0.099%KU647676.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1842018420100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1841718417100%0.099%KU922923.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1839318393100%0.099%KU991811.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1839018390100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1838418384100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1837518375100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1837218372100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1836618366100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1836618366100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1836618366100%0.099%KU365779.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183591835999%0.099%KU497555.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1835418354100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1835418354100%0.099%KU365780.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1834818348100%0.099%KU940228.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1834818348100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1834518345100%0.099%KU501217.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1834518345100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1834518345100%0.099%KU312312.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833918339100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833918339100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833918339100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833618336100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1833018330100%0.099%KX087101.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1832718327100%0.099%KU926310.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1832718327100%0.099%KU820898.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1832118321100%0.099%KU870645.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1831818318100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1831618316100%0.099%KU853012.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1831218312100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1831218312100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1830918309100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1830918309100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1829418294100%0.099%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1828518285100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1828218282100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1828218282100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182541825499%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1818218182100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814118141100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1805118051100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1775917759100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177571775799%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177151771598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1759817598100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1744717447100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164241642499%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1329913299100%0.089%KU720415.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1329313293100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1329313293100%0.089%KF268949.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132931329399%0.089%HQ234498.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1328413284100%0.089%KF268948.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328113281100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1327713277100%0.089%LC002520.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327713277100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1327213272100%0.089%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1326313263100%0.089%KU955592.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1326113261100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1326113261100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1326113261100%0.089%DQ859059.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1324513245100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1323913239100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132231322399%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1321813218100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1316913169100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1314913257100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131471314799%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1295413022100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128791287997%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108591085997%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50381442287%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4958495827%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4931493127%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4677467725%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4677467725%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261330175%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3434343418%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3214321417%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31191310174%0.099%KX101066.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22531077065%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2069206911%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2021202111%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18461389378%0.0100%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183818389%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183818389%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds175217529%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174817489%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174617469%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds174517459%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds174517459%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds174517459%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds174317439%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds160216028%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142014207%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135313537%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1

LOCUS KX156775 10630 bp ss-RNA linear VRL 05-MAY-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome. ACCESSION KX156775 VERSION KX156775.1 GI:1024286104 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10630) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (29-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 240.2x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10630 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015" /host="Homo sapiens" /db_xref="BEI:NR-50220" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Panama" /collection_date="11-Dec-2015" /note="passage details: V1-V3" misc_feature 1..10630 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00009.MAIN" gene 57..10328 /gene="GP1" /locus_tag="A2G93_63485gpGP1" CDS 57..10328 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /codon_start=1 /product="polyprotein" /protein_id="ANB66183.1" /db_xref="GI:1024286105" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGIFSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 57..368 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 423..701 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="protein pr" mat_peptide 702..926 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 927..2438 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="envelope protein E" mat_peptide 2439..3494 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="nonstructural protein NS1" mat_peptide 3495..4172 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="nonstructural protein NS2A" mat_peptide 4173..4562 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="nonstructural protein NS2B" mat_peptide 4563..6413 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="nonstructural protein NS3" mat_peptide 6414..6794 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="nonstructural protein NS4A" mat_peptide 6795..6863 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="protein 2K" mat_peptide 6864..7616 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="nonstructural protein NS4B" mat_peptide 7617..10325 /gene="GP1" /locus_tag="A2G93_63485gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 gctaacaaca gtatcaacag gttttatttt ggatttggaa acgagagttt ctggtcatga 61 aaaacccaaa aaagaaatcc ggaggattcc ggattgtcaa tatgctaaaa cgcggagtag 121 cccgtgtgag cccctttggg ggcttgaaga ggctgccagc cggacttctg ctgggtcatg 181 ggcccatcag gatggtcttg gcgattctag cctttttgag attcacggca atcaagccat 241 cactgggtct catcaataga tggggttcag tggggaaaaa agaggctatg gaaataataa 301 agaagttcaa gaaagatctg gctgccatgc tgagaataat caatgctagg aaggagaaga 361 agagacgagg cgcagaaact agtgtcggaa ttgttggcct cctgctgacc acagctatgg 421 cagcggaggt cactagacgc gggagtgcat actatatgta cttggacaga aacgatgctg 481 gggaggccat atcttttcca accacattgg ggatgaataa gtgttatata cagatcatgg 541 atcttggaca catgtgtgat gccaccatga gctatgaatg ccctatgctg gatgaggggg 601 tggaaccaga tgacgtcgat tgttggtgca acacgacgtc aacttgggtt gtgtacggaa 661 cctgccatca caaaaaaggt gaagcacgga gatctagaag agccgtgacg ctcccctccc 721 attccactag gaagctgcaa acgcggtcgc aaacctggtt ggaatcaaga gaatacacaa 781 agcacttgat tagagtcgaa aattggatat tcaggaaccc tggtttcgct ttagcagcag 841 ctgccatcgc ttggcttttg ggaagctcaa cgagccaaaa agtcatatac ttggtcatga 901 tactgctgat tgccccggca tacagcatca ggtgcatagg agtcagcaat agggactttg 961 tggaaggtat gtcaggtggg acttgggttg atgtcgtctt ggaacatgga ggttgtgtca 1021 ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca acagtcagca 1081 acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg gcttcggaca 1141 gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact caatatgtct 1201 gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt ggcaaaggga 1261 gcctggtgac atgcgctaag tttgcatgct ccaagaaaat gaccgggaag agcatccagc 1321 cagagaatct ggagtaccgg ataatgttgt cagttcatgg ctcccagcac agtgggatga 1381 tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag ataacgccca 1441 attcaccaag agccgaagcc accctggggg gttttggaag cctaggactt gattgtgaac 1501 cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac aagcactggt 1561 tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg gcagacaccg 1621 gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggacgca catgccaaaa 1681 ggcaaactgt cgtggttcta gggagtcaag aaggagcagt tcacacggcc cttgctggag 1741 ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac ttgaaatgtc 1801 gcctgaaaat ggataaactt agattgaagg gcgtgtcata ctccttgtgt accgcagcgt 1861 tcacattcac caagatcccg gctgaaacac tgcacgggac agtcacagtg gaggtacagt 1921 acgcagggac agatggacct tgcaaggttc cagctcagat ggcggtggac atgcaaactc 1981 tgaccccagt tgggaggttg ataaccgcta accccgtaat cactgaaagc actgagaact 2041 ctaagatgat gctggaactt gatccaccat ttggggactc ttacattgtc ataggagtcg 2101 gggagaagaa gatcacccac cactggcaca ggagtggcag caccattgga aaagcatttg 2161 aagccactgt gagaggtgcc aagagaatgg cagtcttggg agacacagcc tgggactttg 2221 gatcagttgg aggcgctctc aactcattgg gcaagggcat ccatcaaatt tttggagcag 2281 ctttcaaatc attgtttgga ggaatgtcct ggttctcaca aattctcatt ggaacgttgc 2341 tgatgtggtt gggtctgaac acaaagaatg gatctatttc ccttatgtgc ttggccttag 2401 ggggagtgtt gatcttctta tccacagccg tctctgctga tgtggggtgc tcggtggact 2461 tctcaaagaa ggagacgaga tgtggtacag gggtgttcgt ctataacgac gttgaagcct 2521 ggagggacag gtacaagtac catcctgact ccccccgtag attggcagca gcagtcaagc 2581 aagcctggga agatggtatc tgcgggatct tctctgtttc aagaatggaa aacatcatgt 2641 ggagatcagt agaaggggag ctcaacgcaa tcctggaaga gaatggagtt caactgacgg 2701 tcgttgtggg atctgtaaaa aaccccatgt ggagaggtcc acagagattg cccgtgcctg 2761 tgaacgagct gccccacggc tggaaggctt gggggaaatc gtacttcgtc agagcagcaa 2821 agacaaataa cagctttgtc gtggatggtg acacactgaa ggaatgccca ctcaaacata 2881 gagcatggaa cagctttctt gtggaggatc atgggttcgg ggtatttcac actagtgtct 2941 ggctcaaggt tagagaagat tattcattag agtgtgatcc agccgttatt ggaacagctg 3001 ttaagggaaa ggaggctgta cacagtgatc taggctactg gattgagagt gagaagaatg 3061 acacatggag gctgaagagg gcccatctga tcgagatgaa aacatgtgaa tggccaaagt 3121 cccacacatt gtggacagat ggaatagaag agagtgatct gatcataccc aagtctttag 3181 ctgggccact cagccatcac aataccagag agggctacag gacccaaatg aaagggccat 3241 ggcacagtga agagcttgaa attcggtttg aggaatgccc aggcactaag gtccacgtgg 3301 aggaaacatg tggaacaaga ggaccatctc tgagatcaac cactgcaagc ggaagggtga 3361 tcgaggaatg gtgctgcagg gagtgcacaa tgcccccact gtcgttctgg gctaaagatg 3421 gctgttggta tggaatggag ataaggccca ggaaagaacc agaaagcaac ttagtaaggt 3481 caatggtgac tgcaggatca actgatcaca tggatcactt ctcccttgga gtgcttgtga 3541 ttctgctcat ggtgcaggaa gggctgaaga agagaatgac cacaaagatc atcataagca 3601 catcaatggc agtgctggta gctatgatcc tgggaggatt ttcaatgagt gacctggcta 3661 agcttgcaat cttgatgggt gccaccttcg cggaaatgaa cactggagga gatgtggctc 3721 atctggcgct gatagcagca ttcaaagtca gaccagcgtt gctggtatct ttcatcttca 3781 gagctaattg gacaccccgt gaaagcatgc tgctggcctt ggcctcgtgt cttttgcaaa 3841 ctgcgatctc cgccttggag ggcgacctga tggttctcat caatggtttt gctttggcct 3901 ggttggcaat acgagcgatg gttgttccac gcactgacaa catcaccttg gcaatcctgg 3961 ctgctctgac accactggcc cggggcacac tgcttgtggc gtggagagca ggccttgcta 4021 cttgcggggg gtttatgctc ctctctctga agggaaaagg cagtgtgaag aagaacttac 4081 catttgtcat ggccctggga ctaaccgctg tgaggctggt cgaccccatc aacgtggtgg 4141 gactgctgtt gctcacaagg agtgggaagc ggagctggcc ccctagcgaa gtactcacag 4201 ctgttggcct gatatgcgca ttggctggag ggttcgccaa ggcagatata gagatggctg 4261 ggcccatggc cgcggtcggt ctgctaattg tcagttacgt ggtctcagga aagagtgtgg 4321 acatgtacat tgaaagagca ggtgacatca catgggaaaa agatgcggaa gtcactggaa 4381 acagtccccg gctcgatgtg gcgctagatg agagtggtga tttctccctg gtggaggatg 4441 acggtccccc catgagagag atcatactca aggtggtcct gatgaccatc tgtggcatga 4501 acccaatagc catacccttt gcagctggag cgtggtacgt atacgtgaag actggaaaaa 4561 ggagtggtgc tctatgggat gtgcctgctc ccaaggaagt aaaaaagggg gagaccacag 4621 atggagtgta cagagtaatg actcgtagac tgctaggttc aacacaagtt ggagtgggag 4681 ttatgcaaga gggggtcttt cacactatgt ggcacgtcac aaaaggatcc gcgctgagaa 4741 gcggtgaagg gagacttgat ccatactggg gagatgtcaa gcaggatctg gtgtcatact 4801 gtggtccatg gaagctagat gccgcctggg acgggcacag cgaggtgcag ctcttggccg 4861 tgccccccgg agagagagcg aggaacatcc agactctgcc cggaatattt aagacaaagg 4921 atggggacat tggagcggtt gcgctggatt acccagcagg aacttcagga tctccaatcc 4981 tagacaagtg tgggagagtg ataggacttt atggcaatgg ggtcgtgatc aaaaatggga 5041 gttatgttag tgccatcacc caagggagga gggaggaaga gactcctgtt gagtgcttcg 5101 agccttcgat gctgaagaag aagcagctaa ctgtcttaga cttgcatcct ggagctggga 5161 aaaccaggag agttcttcct gaaatagtcc gtgaagccat aaaaacaaga ctccgtactg 5221 tgatcttagc tccaaccagg gttgtcgctg ctgaaatgga ggaagccctt agagggcttc 5281 cagtgcgtta tatgacaaca gcagtcaatg tcacccactc tggaacagaa atcgtcgact 5341 taatgtgcca tgccaccttc acttcacgtc tactacagcc aatcagagtc cccaactata 5401 atctgtatat tatggatgag gcccacttca cagatccctc aagtatagca gcaagaggat 5461 acatttcaac aagggttgag atgggcgagg cggctgccat cttcatgacc gccacgccac 5521 caggaacccg tgacgcattt ccggactcca actcaccaat tatggacacc gaagtggaag 5581 tcccagagag agcctggagc tcaggctttg attgggtgac ggatcattct ggaaaaacag 5641 tttggtttgt tccaagcgtg aggaacggca atgagatcgc agcttgtctg acaaaggctg 5701 gaaaacgggt catacagctc agcagaaaga cttttgagac agagttccag aaaacaaaac 5761 atcaagagtg ggactttgtc gtgacaactg acatttcaga gatgggcgcc aactttaaag 5821 ctgaccgtgt catagattcc aggagatgcc taaagccggt catacttgat ggcgagagag 5881 tcattctggc tggacccatg cctgtcacac atgccagcgc tgcccagagg agggggcgca 5941 taggcaggaa tcccaataaa cctggagatg agtatctgta tggaggtggg tgcgcagaga 6001 ctgacgaaga ccatgcacac tggcttgaag caagaatgct ccttgacaat atttacctcc 6061 aagatggcct catagcctcg ctctatcgac ctgaggccga caaagtagca gccattgagg 6121 gagagttcaa gcttaggacg gagcaaagga agacctttgt ggaactcatg aaaagaggag 6181 atcttcctgt ttggctggcc tatcaggttg catctgccgg aataacctac acagatagaa 6241 gatggtgctt tgatggcacg accaacaaca ccataatgga agacagtgtg ccggcagagg 6301 tgtggaccag acacggagag aaaagagtgc tcaaaccgag gtggatggac gccagagttt 6361 gttcagatca tgcggccctg aagtcattca aggagtttgc cgctgggaaa agaggagcgg 6421 cttttggagt gatggaagcc ctgggaacac tgccaggaca catgacagag agattccagg 6481 aagccattga caacctcgct gtgctcatgc gggcagagac tggaagcagg ccttacaaag 6541 ccgcggcggc ccaattgccg gagaccctag agaccattat gcttttgggg ttgctgggaa 6601 cagtctcgct gggaatcttt ttcgtcttga tgaggaacaa gggcataggg aagatgggct 6661 ttggaatggt gactcttggg gccagcgcat ggctcatgtg gctctcggaa attgagccag 6721 ccagaattgc atgtgtcctc attgttgtgt tcctattgct ggtggtgctc atacctgagc 6781 cagaaaagca aagatctccc caggacaacc aaatggcaat catcatcatg gtagcagtag 6841 gtcttctggg cttgattacc gccaatgaac tcggatggtt ggagagaaca aagagtgacc 6901 taagccatct aatgggaagg agagaggagg gggcaaccat aggattctca atggacattg 6961 acctgcggcc agcctcagct tgggccatct atgctgcctt gacaactttc attaccccag 7021 ctgtccaaca tgcagtgacc acttcataca acaactactc cttaatggcg atggccacgc 7081 aagctggagt gttgtttggt atgggcaaag ggatgccatt ctacgcatgg gactttggag 7141 tcccgctgct aatgataggt tgctactcac aattaacacc cctgacccta atagtggcca 7201 tcattttgct cgtggcgcac tacatgtact tgatcccagg gctgcaggca gcagctgcgc 7261 gcgctgccca gaagagaacg gcagctggca tcatgaagaa ccctgttgtg gatggaatag 7321 tggtgactga cattgacaca atgacaattg acccccaagt ggagaaaaag atgggacagg 7381 tgctactcat agcagtagcc gtctccagcg ccatactgtc gcggaccgcc tgggggtggg 7441 gggaggctgg ggccctgatc acagccgcaa cttccacttt gtgggaaggc tctccgaaca 7501 agtactggaa ctcctctaca gccacttcac tgtgtaacat ttttagggga agttacttgg 7561 ctggagcttc tctaatctac acagtaacaa gaaacgctgg cttggtcaag agacgtgggg 7621 gtggaacagg agagaccctg ggagagaaat ggaaggcccg cttgaaccag atgtcggccc 7681 tggagttcta ctcctacaaa aagtcaggca tcaccgaggt gtgcagagaa gaggcccgcc 7741 gcgccctcaa ggacggtgtg gcaacgggag gccatgctgt gtcccgagga agtgcaaagc 7801 tgagatggtt ggtggagcgg ggatacctgc agccctatgg aaaggtcatt gatcttggat 7861 gtggcagagg gggctggagt tactacgccg ccaccatccg caaagttcaa gaagtgaaag 7921 gatacacaaa aggaggccct ggtcatgaag aacccgtgtt ggtgcaaagc tatgggtgga 7981 acatagtccg tcttaagagt ggggtggacg tctttcatat ggcggctgag ccgtgtgaca 8041 cgttgctgtg tgacataggt gagtcatcat ctagtcctga agtggaagaa gcacggacgc 8101 tcagagtcct ctccatggtg ggggattggc ttgaaaaaag accaggagcc ttttgtataa 8161 aagtgttgtg cccatacacc agcactatga tggaaaccct ggagcgactg cagcgtaggt 8221 atgggggagg actggtcaga gtgccactct cccgcaactc tacacatgag atgtactggg 8281 tctctggagc gaaaagcaac accataaaaa gtgtgtccac cacgagccag ctcctcttgg 8341 ggcgcatgga cgggcctagg aggccagtga aatatgagga ggatgtgaat ctcggctctg 8401 gcacgcgggc tgtggtaagc tgcgctgaag ctcccaacat gaagatcatt ggtaaccgca 8461 ttgaaaggat ccgcagtgag cacgcggaaa cgtggttctt tgacgagaac cacccatata 8521 ggacatgggc ttaccatgga agctatgagg cccccacaca agggtcagcg tcctctctaa 8581 taaacggggt tgtcaggctc ctgtcaaaac cctgggatgt ggtgactgga gtcacaggaa 8641 tagccatgac cgacaccaca ccgtatggtc agcaaagagt tttcaaggaa aaagtggaca 8701 ctagggtgcc agacccccaa gaaggcactc gtcaggttat gagcatggtc tcttcctggt 8761 tgtggaaaga gctaggcaaa cacaaacggc cacgagtctg taccaaagaa gagttcatca 8821 acaaggttcg tagcaatgca gcattagggg caatatttga agaggaaaaa gagtggaaga 8881 ctgcagtgga agctgtgaac gatccaaggt tctgggctct agtggacaag gaaagagagc 8941 accacctgag aggagagtgc cagagttgtg tgtacaacat gatgggaaaa agagaaaaga 9001 aacaagggga atttggaaag gccaagggca gccgcgccat ctggtatatg tggctagggg 9061 ctagatttct agagttcgaa gcccttggat tcttgaacga ggatcactgg atggggagag 9121 agaactcagg aggtggtgtt gaagggctgg gattacaaag actcggatat gtcctagaag 9181 agatgagtcg cataccagga ggaaggatgt atgcagatga cactgctggc tgggacaccc 9241 gcattagcag gtttgatctg gagaatgaag ctctaatcac caaccaaatg gagaaagggc 9301 acagggcctt ggcattggcc ataatcaagt acacatacca aaacaaagtg gtaaaggtcc 9361 ttagaccagc tgaaaaaggg aaaacagtta tggacattat ttcgagacaa gaccaaaggg 9421 ggagcggaca agttgtcact tacgctctta acacatttac caacctagtg gtgcaactca 9481 ttcggaatat ggaggctgag gaagttctag agatgcaaga cttgtggctg ctgcggaggt 9541 cagagaaagt gaccaactgg ttgcagagca acggatggga taggctcaaa cgaatggcag 9601 tcagtggaga tgattgcgtt gtgaagccaa ttgatgatag gtttgcacat gccctcaggt 9661 tcttgaatga tatgggaaaa gttaggaagg acacacaaga gtggaaaccc tcaactggat 9721 gggacaactg ggaagaagtt ccgttttgct cccaccactt caacaagctc catctcaagg 9781 acgggaggtc cattgtggtt ccctgccgcc accaagatga actgattggc cgggcccgcg 9841 tctctccagg ggcgggatgg agcatccggg agactgcttg cctagcaaaa tcatatgcgc 9901 aaatgtggca gctcctttat ttccacagaa gggacctccg actgatggcc aatgccattt 9961 gttcatctgt gccagttgac tgggttccaa ctgggagaac tacctggtca atccatggaa 10021 agggagaatg gatgaccact gaagacatgc ttgtggtgtg gaacagagtg tggattgagg 10081 agaacgacca catggaagac aagaccccag ttgcgaaatg gacagacatt ccctatttgg 10141 gaaaaaggga agacttgtgg tgtggatctc tcatagggca cagaccgcgc accacctggg 10201 ctgagaacat taaaaacaca gtcaacatgg tgcgcaggat cataggtgat gaagaaaagt 10261 acatggacta cctatccacc caagttcgct acttgggtga agaagggtcc acacctggag 10321 tgctgtaagc accaatctta atgttgtcag gcctgctagt cagccacagc ttggggaaag 10381 ctgtgcagcc tgtgaccccc ccaggagaag ctgggaaacc aagcctatag tcaggccgag 10441 aacgccatgg cacggaagaa gccatgctgc ctgtgagccc ctcagaggac actgagtcaa 10501 aaaaccccac gcgcttggag gcgcaggatg ggaaaagaag gtggcgacct tccccaccct 10561 tcaatctggg gcctgaactg gagatcagct gtggatctcc agaagaggga ctagtggtta 10621 gaggagaccc

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

Pregnant Connecticut woman with Zika virus speaks outPOSTED 4:08 PM, MAY 5, 2016, BY CNNFACEBOOK341TWITTERTUMBLRREDDITPINTERESTEMAIL DANBURY, Conn. — A pregnant woman from Connecticut recently tested positive for the Zika virus, and now she is speaking out. Sara Mujica, 17 from Danbury, is in Honduras right now where her fiancée lives. The two are planning to be married in a few weeks, and she will return back to the state after that. On Tuesday, the state’s Department of Public Health said she had tested positive for Zika virus after traveling in Central America. The state’s health department is now urging her to come home. Eyewitness News spoke with Mujica on Wednesday, who said she isn’t feeling her best. “I had a fever and I started getting rashes all over my back, my legs, my face, my arms I had a rash everywhere,” Mujica said. She said she got pregnant at the end of February with her fiancée Victor Cruz, who lives in Honduras. When she came back to Connecticut on March 30, she knew something was wrong. “I knew it (Zika virus) was around and I was thinking it was Zika and of course I was thinking that. No one wants to go through that when they are pregnant and have a baby that might possibly come out deformed,” Mujica said. She went back to Honduras to be with her fiancée and to move forward with their planned wedding, and to figure out together what to do next. “I am very nervous. I don’t know what to do exactly. I don’t want to say I don’t know if I should have an abortion or just take what God gave me,” Mujica said. Her fiancée wants her to keep the baby. She said her mother, whom she lives with in Danbury, would like her to make her own decision. In the meantime, she said she doesn’t want to come back to Connecticut without her future husband. He has no work visa, so she needs his government paperwork to be processed quickly once they marry so he can come to the United States as a spouse. Also, her prepaid return ticket is not scheduled until July and she said she does not have the money to pay the change fee to come back earlier. She will be treated at Danbury Hospital once she returns. http://pix11.com/2016/05/05/pregnant-connecticut-woman-with-zika-virus-speaks-out/

Sequence map update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842618426100%0.099%KU365778.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1841718417100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1841118411100%0.099%KX087101.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1841118411100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1841118411100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1839918399100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1839918399100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1839318393100%0.099%KU365777.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1838118381100%0.099%KU509998.3Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1838118381100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1837518375100%0.099%KX056898.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837518375100%0.099%KJ776791.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1837218372100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1837218372100%0.099%KU761564.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1836618366100%0.099%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1836618366100%0.099%KU955590.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836618366100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1836318363100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835718357100%0.099%KU729218.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1835418354100%0.099%KU926309.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1834518345100%0.099%KU501217.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1833918339100%0.099%KU940228.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833918339100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833918339100%0.099%KU501216.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1833618336100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1833618336100%0.099%KU820897.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183321833299%0.099%KU497555.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833018330100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833018330100%0.099%KU527068.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1832118321100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1832118321100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831818318100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831818318100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830918309100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830718307100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828518285100%0.099%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827618276100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1827318273100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1827318273100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182451824599%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1816818168100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814118141100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803318033100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773217732100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177301773099%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176881768898%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1757617576100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742517425100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164241642499%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1331313313100%0.089%KU720415.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1331113311100%0.089%KF383115.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133081330899%0.089%HQ234498.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1329313293100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1329313293100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1329013290100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328613286100%0.089%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1328613286100%0.089%KF268950.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1327413274100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1327413274100%0.089%KU955594.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1327213272100%0.089%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1326313263100%0.089%KU955592.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1324513245100%0.089%KU955591.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1323213232100%0.089%AY632535.2Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1323013230100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132051320599%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1317813178100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1314013248100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131381313899%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1297613044100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128821288297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108771087797%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50291441387%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4994499427%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4967496727%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4637463725%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4628462825%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42171330175%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3449344918%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3211321117%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31041309374%0.099%KX101066.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2691269114%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22621076865%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2060206011%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2008200811%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18401387378%0.099%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds182418249%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds182418249%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds173717379%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds173617369%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds173417349%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173017309%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173017309%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173017309%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds172817289%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159315938%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141114117%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds133913397%0.099%KU985087.1

LOCUS KU937936 10542 bp RNA linear VRL 02-MAY-2016 DEFINITION Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds. ACCESSION KU937936 VERSION KU937936.1 GI:1013874252 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10542) AUTHORS Stalin Raj,V., van der Eijk,A., van Genderen,P.J., Verdijk,R., Dijkman,A., Reusken,C.B., van Kampen,J.J.A., Aron,G.I., Geurtsvankessel,C.H., Pas,S.D., Haagmans,B.L. and Koopmans,M.P.G. TITLE Direct Submission JOURNAL Submitted (18-MAR-2016) Department of Viroscience, Erasmus Medical Center, Dr Molewaterplein 50, Rotterdam 3015 GE, the Netherlands COMMENT ##Assembly-Data-START## Assembly Method :: CLC Bio v. 4.9 Sequencing Technology :: Sanger dideoxy sequencing; 454 ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10542 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKVNL00013" /host="Homo sapiens" /db_xref="taxon:64320" /country="Suriname" /collection_date="11-Feb-2016" /note="passage details: Vero cells" CDS 88..10359 /note="C-prM/M-E-NS1-NS2a-NS2b-NS3-NS4A-NS4B-NS5" /codon_start=1 /product="polyprotein" /protein_id="AMU04506.1" /db_xref="GI:1013874253" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWSSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactatatgt acttggacag aaacgatgct ggggaggcca tatcttttcc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca 901 acgagccaaa aagtcatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggttgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaagttga gataacgccc aattcaccaa gagccgaagc caccctgggg 1501 ggttttggaa gcctaggact tgattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg tactgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgct 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttag gagacacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaattctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2401 ggatctattt cccttatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc ggcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagctcag tagaagggga gctcaacgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt cagagcagca aagacaaata acagctttgt cgtggatggt 2881 gacacactga aggaatgccc actcaaacat agagcatgga acagctttct tgtggaggat 2941 catgggttcg gggtatttca cactagtgtc tggctcaagg ttagagaaga ttactcatta 3001 gagtgtgatc cagccgttat tggaacagct gttaagggaa aggaggctgt acacagtgat 3061 ctaggctact ggattgagag tgagaagaat gacacatgga ggctgaagag ggcccatctg 3121 atcgagatga aaacatgtga atggccaaag tcccacacat tgtggacaga tggaatagaa 3181 gagagtgatc tgatcatacc caagtcttta gctgggccac tcagccatca caataccaga 3241 gagggctaca ggacccaaat gaaagggcca tggcacagtg aagagcttga aattcggttt 3301 gaggaatgtc caggcactaa ggtccacgtg gaggaaacat gtggaacaag aggaccatct 3361 ctgagatcaa ccactgcaag cggaagggtg atcgaggaat ggtgctgcag ggagtgcaca 3421 atgcccccac tgtcgttccg ggctaaagat ggctgttggt atggaatgga gataaggccc 3481 aggaaagaac cagaaagcaa cttagtaagg tcaatggtga ctgcaggatc aactgatcac 3541 atggaccact tctcccttgg agtgcttgtg atcctgctca tggtgcagga agggctgaag 3601 aagagaatga ccacaaagat catcataagc acatcaatgg cagtgctggt agctatgatc 3661 ctgggaggat tttcaatgag tgacctggct aagcttgcaa ttttgatggg tgccaccttc 3721 gcggaaatga acactggagg agatgtagct catctggcgc tgatagcggc attcaaagtc 3781 agaccagcgt tgctggtatc tttcatcttc agagctaatt ggacaccccg tgaaagcatg 3841 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 3901 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 3961 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca 4021 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctttg 4081 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct 4141 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag 4201 cggagctggc cccctagcga agtactcaca gctgtcggcc tgatatgcgc attggctgga 4261 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 4321 gtcagttacg tggtctcagg aaagagtgtg gacatgtaca ttgaaagagc aggtgacatc 4381 acatgggaaa aagatgcgga agtcactgga aacagtcccc ggctcgatgt ggcgctagat 4441 gagagtggtg atttctccct ggtggaggat gacggtcccc ccatgagaga gatcatactc 4501 aaggtggtcc tgatgaccat ctgtggcatg aacccaatag ccataccctt tgcagctgga 4561 gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg ctctatggga tgtgcctgct 4621 cccaaggaag taaaaaaggg ggagaccaca gatggagtgt acagagtaat gactcgtaga 4681 ctgctaggtt caacacaagt tggagtggga gttatgcaag agggggtctt tcacactatg 4741 tggcacgtca caaaaggatc cgcgctgaga agcggtgaag ggagacttga tccatactgg 4801 ggagatgtca agcaggatct ggtgtcatac tgtggtccat ggaagctaga tgccgcctgg 4861 gacgggcaca gcgaggtgca gctcttggcc gtgccccccg gagagagagc gaggaacatc 4921 cagactctgc ccggaatatt taagacaaag gatggggaca ttggagcggt tgcgctggat 4981 tacccagcag gaacttcagg atctccaatc ctagacaagt gtgggagagt gataggactt 5041 tatggcaatg gggtcgtgat caaaaatggg agttatgtta gtgccatcac ccaagggagg 5101 agggaggaag agactcctgt tgagtgcttc gagccctcga tgctgaagaa gaagcagcta 5161 actgtcttag acttgcatcc tggagctggg aaaaccagga gagttcttcc tgaaatagtc 5221 cgtgaagcca taaaaacaag actccgtact gtgatcttag ctccaaccag ggttgtcgct 5281 gctgaaatgg aggaggccct tagagggctt ccagtgcgtt atatgacaac agcagtcaat 5341 gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc atgccacctt cacttcacgt 5401 ctactacagc caatcagagt ccccaactat aatctgtata ttatggatga ggcccacttc 5461 acagatccct caagtatagc agcaagagga tacatttcaa caagggttga gatgggcgag 5521 gcggctgcca tcttcatgac cgccacgcca ccaggaaccc gtgacgcatt tccggactcc 5581 aactcaccaa tcatggacac cgaagtggaa gtcccagaga gagcctggag ctcaggcttt 5641 gattgggtga cggatcattc tggaaaaaca gtttggtttg ttccaagcgt gaggaacggc 5701 aatgagatcg cagcttgtct gacaaaggct ggaaaacggg tcatacagct cagcagaaag 5761 acttttgaga cagagttcca gaaaacaaaa catcaagagt gggactttgt cgtgacaact 5821 gacatttcag agatgggcgc caactttaaa gctgaccgtg tcatagattc caggagatgc 5881 ctaaagccgg tcatacttga tggcgagaga gtcattctgg ctggacccat gcctgtcaca 5941 catgccagcg ctgcccagag gagggggcgc ataggcagga atcccaacaa acctggagat 6001 gagtatctgt atggaggtgg gtgcgcagag actgacgaag accatgcaca ctggcttgaa 6061 gcaagaatgc tccttgacaa tatttacctc caagatggcc tcatagcctc gctctatcga 6121 cctgaggccg acaaagtagc agccattgag ggagagttca agcttaggac ggagcaaagg 6181 aagacctttg tggaactcat gaaaagagga gatcttcctg tttggctggc ctatcaggtt 6241 gcatctgccg gaataaccta cacagataga agatggtgct ttgatggcac gaccaacaac 6301 accataatgg aagacagtgt gccggcagag gtgtggacca gacacggaga gaaaagagtg 6361 ctcaaaccga ggtggatgga cgccagagtt tgttcagatc atgcggccct gaagtcattc 6421 aaggagtttg ccgctgggaa aagaggagcg gcttttggag tgatggaagc cctgggaaca 6481 ctgccaggac acatgacaga gagattccag gaagccattg acaacctcgc tgtgctcatg 6541 cgggcagaga ctggaagcag gccttacaaa gccgcggcgg cccaattgcc ggagacccta 6601 gagaccataa tgcttttggg gttgctggga acagtctcgc tgggaatctt cttcgtcttg 6661 atgaggaaca agggcatagg gaagatgggc tttggaatgg tgactcttgg ggccagcgca 6721 tggctcatgt ggctctcgga aattgagcca gccaggattg catgtgtcct cattgttgtg 6781 ttcctattgc tggtggtgct catacctgag ccagaaaagc aaagatctcc ccaggacaac 6841 caaatggcaa tcatcatcat ggtagcagta ggtcttctgg gcttgattac cgccaatgaa 6901 ctcggatggt tggagagaac aaagagtgac ctaagccatc taatgggaag gagagaggag 6961 ggggcaacca taggattctc aatggacatt gacctgcggc cagcctcagc ttgggccatc 7021 tatgctgcct tgacaacttt cattacccca gccgtccaac atgcagtgac cacctcatac 7081 aacaactact ccttaatggc gatggccacg caagctggag tgttgtttgg tatgggcaaa 7141 gggatgccat tctacgcatg ggactttgga gtcccgctgc taatgatagg ttgctactca 7201 caattaacac ccctgaccct aatagtggcc atcattttgc tcgtggcgca ctacatgtac 7261 ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc agaagagaac ggcagctggc 7321 atcatgaaga accctgttgt ggatggaata gtggtgactg acattgacac aatgacaatt 7381 gacccccaag tggagaaaaa gatgggacag gtgctactca tagcagtagc cgtctccagc 7441 gccatactgt cgcggaccgc ctgggggtgg ggggaggctg gggccctgat cacagccgca 7501 acttccactt tgtgggaagg ctctccgaac aagtactgga actcctctac agccacttca 7561 ctgtgtaaca tttttagggg aagttacttg gctggagctt ctctaatcta cacagtaaca 7621 agaaacgctg gcttggtcaa gagacgtggg ggtggaacag gagagaccct gggagagaaa 7681 tggaaggccc gcttgaacca gatgtcggcc ctggagttct actcctacaa aaagtcaggc 7741 atcaccgagg tgtgcagaga agaggcccgc cgcgccctca aggacggtgt ggcaacggga 7801 ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt tggtggagcg gggatacctg 7861 cagccctatg gaaaggtcat tgatcttgga tgtggcagag ggggctggag ttactacgcc 7921 gccaccatcc gcaaagttca agaagtgaaa ggatacacaa aaggaggccc tggtcatgaa 7981 gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc gtcttaagag tggggtggac 8041 gtctttcata tggcggctga gccgtgtgac acgttgctgt gtgacatagg tgagtcatca 8101 tctagtcctg aagtggaaga agcacggacg ctcagagtcc tctctatggt gggggattgg 8161 cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt gcccatacac cagcactatg 8221 atggaaaccc tggagcgact gcagcgtagg tatgggggag gactggtcag agtgccactc 8281 tcccgcaact ctacacatga gatgtactgg gtctctggag cgaaaagcaa caccataaaa 8341 agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg acgggcctag gaggccagtg 8401 aaatatgagg aggatgtgaa tctcggctct ggcacgcggg ctgtggtaag ctgcgctgaa 8461 gctcccaaca tgaagatcat tggtaaccgc attgaaagga tccgcagtga gcacgcggaa 8521 acgtggttct ttgacgagaa ccacccatat aggacatggg cttaccatgg aagctatgag 8581 gcccccacac aagggtcagc gtcctctcta ataaacgggg ttgtcaggct cctgtcaaaa 8641 ccctgggatg tggtgactgg agtcacagga atagccatga ccgacaccac accgtatggt 8701 cagcaaagag ttttcaagga aaaagtggac actagggtgc cagaccccca agaaggcact 8761 cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag agctaggcaa acacaaacgg 8821 ccacgagtct gtaccaaaga agagttcatc aacaaggttc gtagcaatgc agcattaggg 8881 gcaatatttg aagaggaaaa agagtggaag actgcagtgg aagctgtgaa cgatccaagg 8941 ttctgggctc tagtggacaa ggaaagagag caccacctga gaggagagtg ccagagttgt 9001 gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg aatttggaaa ggccaagggc 9061 agccgcgcca tctggtatat gtggctaggg gctagatttc tagagttcga agccctcgga 9121 ttcttgaacg aggatcactg gatggggaga gagaactcag gaggtggtgt tgaagggctg 9181 ggattacaaa gactcggata tgtcctagaa gagatgagtc gtataccagg aggaagaatg 9241 tatgcagatg acactgctgg ctgggacacc cgcattagca ggtttgatct ggagaatgaa 9301 gctctaatca ccaaccaaat ggagaaaggg cacagggcct tggcattggc cataatcaag 9361 tacacatacc aaaacaaagt ggtaaaggtc cttagaccag ctgaaaaagg gaaaacagtt 9421 atggacatta tttcgagaca agaccaaagg gggagcggac aagttgtcac ttacgctctt 9481 aacacattta ccaacctagt ggtgcaactc attcggaata tggaggctga ggaagttcta 9541 gagatgcaag acttgtggct gctgcggagg tcagagaaag tgaccaactg gttgcagagc 9601 aacggatggg ataggctcaa acgaatggca gtcagtggag atgattgcgt tgtgaagcca 9661 attgatgata ggtttgcaca tgccctcagg ttcttgaatg atatgggaaa agttaggaag 9721 gacacacaag agtggaaacc ctcaactgga tgggacaact gggaagaagt tccgttttgc 9781 tcccaccact tcaacaagct ccatctcaag gacgggaggt ccattgtggt tccctgccgc 9841 caccaagatg aactgattgg ccgggcccgc gtctctccag gggcgggatg gagcatccgg 9901 gagactgctt gcctagcaaa atcatatgcg caaatgtggc agctccttta tttccacaga 9961 agggacctcc gactgatggc caatgccatt tgttcatctg tgccagttga ctgggttcca 10021 actgggagaa ctacctggtc aatccatgga aagggagaat ggatgaccac tgaagacatg 10081 cttgtggtgt ggaacagagt gtggattgag gagaacgacc acatggaaga caagacccca 10141 gttacgaaat ggacagacat tccctatttg ggaaaaaggg aagacttgtg gtgtggatct 10201 ctcatagggc acagaccgcg caccacctgg gctgagaaca ttaaaaacac agtcaacatg 10261 gtgcgcagga tcataggtga tgaagaaaag tacatggact acctatccac ccaagttcgc 10321 tacttgggtg aagaagggtc tacacctgga gtgctgtaag caccaatctt aatgttgtca 10381 ggcctgctag tcagccacag cttggggaaa gctgtgcagc ctgtgacccc cccaggagaa 10441 gctgggaaac caagcctata gtcaggccga gaacgccatg gcacggaaga agccatgctg 10501 cctgtgagcc cctcagagga cactgagtca aaaaacccca cg

EMC full 2016 Zika sequences from Suriname, ZIKVNL00013, http://www.ncbi.nlm.nih.gov/nuccore/KU937936.1

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

Sequence map update https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1846518465100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1846518465100%0.099%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1844418444100%0.099%KU647676.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1842618426100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1842018420100%0.099%KU922923.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1839918399100%0.099%KU991811.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1839318393100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1839018390100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1838118381100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1837518375100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1837218372100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1837218372100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1837218372100%0.099%KU365779.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1836618366100%0.099%KU926309.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183631836399%0.099%KU497555.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1835718357100%0.099%KU365780.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1835418354100%0.099%KU940228.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1835418354100%0.099%KU729217.2Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1835418354100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1834818348100%0.099%KU501217.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1834818348100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1834818348100%0.099%KU312312.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1834518345100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1834518345100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833918339100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1833618336100%0.099%KX087101.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1833018330100%0.099%KU926310.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1833018330100%0.099%KU820898.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1832718327100%0.099%KU870645.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1832118321100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1832118321100%0.099%KU853012.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1831818318100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1831818318100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1831218312100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1831218312100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1830018300100%0.099%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1829118291100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1828518285100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1828518285100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182581825899%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1818618186100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814618146100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1805618056100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1776217762100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177621776299%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177211772198%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1760317603100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1744717447100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164201642099%0.095%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1330613306100%0.089%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1330213302100%0.089%KF383115.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1329713297100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1329513295100%0.089%KU720415.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1329013290100%0.089%KF268950.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132901329099%0.089%HQ234498.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1328613286100%0.089%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1327713277100%0.089%KU955592.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1327713277100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1327213272100%0.089%LC002520.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1326613266100%0.089%DQ859059.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1325913259100%0.089%KU955591.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1325613256100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1325613256100%0.089%KU955594.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1325213252100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132361323699%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1321413214100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1317813178100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1315313260100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131531315399%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1294913017100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128731287397%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108621086297%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50341442787%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496227%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4935493527%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4677467725%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4677467725%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261331375%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3434343418%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3211321117%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31191310474%0.099%KX101066.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22501077765%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2075207511%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2021202111%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18461389378%0.0100%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183818389%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183818389%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds175217529%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174817489%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174617469%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds174517459%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds174517459%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds174517459%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds174317439%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds160216028%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142014207%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135313537%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1

LOCUS KX156774 10672 bp ss-RNA linear VRL 05-MAY-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome. ACCESSION KX156774 VERSION KX156774.1 GI:1024286099 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10672) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (29-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 248.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10672 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015" /host="Homo sapiens" /db_xref="BEI:NR-50219" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Panama" /collection_date="18-Dec-2015" /note="passage details: V1-V3" misc_feature 1..10672 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00008.MAIN" gene 72..10343 /gene="GP1" /locus_tag="A2G93_63484gpGP1" CDS 72..10343 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /codon_start=1 /product="polyprotein" /protein_id="ANB66182.1" /db_xref="GI:1024286100" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPIAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 72..383 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 438..716 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="protein pr" mat_peptide 717..941 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 942..2453 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="envelope protein E" mat_peptide 2454..3509 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="nonstructural protein NS1" mat_peptide 3510..4187 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="nonstructural protein NS2A" mat_peptide 4188..4577 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="nonstructural protein NS2B" mat_peptide 4578..6428 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="nonstructural protein NS3" mat_peptide 6429..6809 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="nonstructural protein NS4A" mat_peptide 6810..6878 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="protein 2K" mat_peptide 6879..7631 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="nonstructural protein NS4B" mat_peptide 7632..10340 /gene="GP1" /locus_tag="A2G93_63484gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 gaatttgaag cgaatgctaa caacagtatc aacaggtttt attttggatt tggaaacgag 61 agtttctggt catgaaaaac ccaaaaaaga aatccggagg attccggatt gtcaatatgc 121 taaaacgcgg agtagcccgt gtgagcccct ttgggggctt gaagaggctg ccagccggac 181 ttctgctggg tcatgggccc atcaggatgg tcttggcgat tctagccttt ttgagattca 241 cggcaatcaa gccatcactg ggtctcatca atagatgggg ttcagtgggg aaaaaagagg 301 ctatggaaat aataaagaag ttcaagaaag atctggctgc catgctgaga ataatcaatg 361 ctaggaagga gaagaagaga cgaggcgcag aaactagtgt cggaattgtt ggcctcctgc 421 tgaccacagc tatggcagcg gaggtcacta gacgtgggag tgcatactat atgtacttgg 481 acagaaacga tgctggggag gccatatctt ttccaaccac attggggatg aataagtgtt 541 atatacagat catggatctt ggacacatgt gtgatgccac catgagctat gaatgcccta 601 tgctggatga gggggtggaa ccagatgacg tcgattgttg gtgcaacacg acgtcaactt 661 gggttgtgta cggaacctgc catcacaaaa aaggtgaagc acggagatct agaagagccg 721 tgacgctccc ctcccattcc actaggaagc tgcaaacgcg gtcgcaaacc tggttggaat 781 caagagaata cacaaagcac ttgattagag tcgaaaattg gatattcagg aaccctggtt 841 tcgctttagc agcagctgcc atcgcttggc ttttgggaag ctcaacgagc caaaaagtca 901 tatacttggt catgatactg ctgattgccc cggcatacag catcaggtgc ataggagtca 961 gcaataggga ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtc gtcttggaac 1021 atggaggttg tgtcaccgta atggcacagg acaaaccgac tgtcgacata gagctggtta 1081 caacaacagt cagcaacatg gcggaggtaa gatcctactg ctatgaggca tcaatatcag 1141 acatggcttc ggacagccgc tgcccaacac aaggtgaagc ctaccttgac aagcaatcag 1201 acactcaata tgtctgcaaa agaacgttag tggacagagg ctggggaaat ggatgtggac 1261 tttttggcaa agggagcctg gtgacatgcg ctaagtttgc atgctccaag aaaatgaccg 1321 ggaagagcat ccagccagag aatctggagt accggataat gttgtcagtt catggctccc 1381 agcacagtgg gatgatcgtt aatgacacag gacatgaaac tgatgagaat agagcgaagg 1441 ttgagataac gcccaattca ccaagagccg aagccaccct ggggggtttt ggaagcctag 1501 gacttgattg tgaaccgagg acaggccttg acttttcaga tttgtattac ttgactatga 1561 ataacaagca ctggttggtt cacaaggagt ggttccacga cattccatta ccttggcacg 1621 ctggggcaga caccggaact ccacactgga acaacaaaga agcactggta gagttcaagg 1681 acgcacatgc caaaaggcaa actgtcgtgg ttctagggag tcaagaagga gcagttcaca 1741 cggcccttgc tggagctctg gaggctgaga tggatggtgc aaagggaagg ctgtcctctg 1801 gccacttgaa atgtcgcctg aaaatggata aacttagatt gaagggcgtg tcatactcct 1861 tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga aacactgcac gggacagtca 1921 cagtggaggt acagtacgca gggacagatg gaccttgcaa ggttccagct cagatggcgg 1981 tggacatgca aactctgacc ccagttggga ggttgataac cgctaacccc gtaatcactg 2041 aaagcactga gaactctaag atgatgctgg aacttgatcc accatttggg gactcttaca 2101 ttgtcatagg agtcggggag aagaagatca cccaccactg gcacaggagt ggcagcacca 2161 ttggaaaagc atttgaagcc actgtgagag gtgccaagag aatggcagtc ttgggagaca 2221 cagcctggga ctttggatca gttggaggcg ctctcaactc attgggcaag ggcatccatc 2281 aaatttttgg agcagctttc aaatcattgt ttggaggaat gtcctggttc tcacaaattc 2341 tcattggaac gttgctgatg tggttgggtc tgaacacaaa gaatggatct atttccctta 2401 tgtgcttggc cttaggggga gtgttgatct tcttatccac agccgtctct gctgatgtgg 2461 ggtgctcggt ggacttctca aagaaggaga cgagatgtgg tacaggggtg ttcgtctaca 2521 acgacgttga agcctggagg gacaggtaca agtaccatcc tgactccccc cgtagattgg 2581 cagcagcagt caagcaagcc tgggaagatg gtatctgcgg gatctcctct gtttcaagaa 2641 tggaaaacat catgtggaga tcagtagaag gggagctcaa cgcaatcctg gaagagaatg 2701 gagttcaact gacggtcgtt gtgggatctg taaaaaaccc catgtggaga ggtccacaga 2761 gattgcccgt gcctgtgaac gagctgcccc acggctggaa ggcttggggg aaatcgtact 2821 tcgtcagagc agcaaagaca aataacagct ttgtcgtgga tggtgacaca ctgaaggaat 2881 gcccactcaa acatagagca tggaacagct ttcttgtgga ggatcatggg ttcggggtat 2941 ttcacactag tgtctggctc aaggttagag aagattattc attagagtgt gatccagccg 3001 ttattggaac agctgttaag ggaaaggagg ctgtacacag tgatctaggc tactggattg 3061 agagtgagaa gaatgacaca tggaggctga agagggccca tctgatcgag atgaaaacat 3121 gtgaatggcc aaagtcccac acattgtgga cagatggaat agaagagagt gatctgatca 3181 tacccaagtc tttagctggg ccactcagcc atcacaatac cagagagggc tacaggaccc 3241 aaatgaaagg gccatggcac agtgaagagc ttgaaattcg gtttgaggaa tgcccaggca 3301 ctaaggtcca cgtggaggaa acatgtggaa caagaggacc atctctgaga tcaaccactg 3361 caagcggaag ggtgatcgag gaatggtgct gcagggagtg cacaatgccc ccactgtcgt 3421 tctgggctaa agatggctgt tggtatggaa tggagataag gcccaggaaa gaaccagaaa 3481 gcaacttagt aaggtcaatg gtgactgcag gatcaactga tcacatggat cacttctccc 3541 ttggagtgct tgtgattctg ctcatggtgc aggaagggct gaagaagaga atgaccacaa 3601 agatcatcat aagcacatca atggcagtgc tggtagctat gatcctggga ggattttcaa 3661 tgagtgacct ggctaagctt gcaatcttga tgggtgccac cttcgcggaa atgaacactg 3721 gaggagatgt ggctcatctg gcgctgatag cagcattcaa agtcagacca gcgttgctgg 3781 tatctttcat cttcagagct aattggacac cccgtgaaag catgctgctg gccttggcct 3841 cgtgtctttt gcaaactgcg atctccgcct tggagggcga cctgatggtt ctcatcaatg 3901 gttttgcttt ggcctggttg gcaatacgag cgatggttgt tccacgcact gacaacatca 3961 ccttggcaat cctggctgct ctgacaccac tggcccgggg cacactgctt gtggcgtgga 4021 gagcaggcct tgctacttgc ggggggttta tgctcctctc tctgaaggga aaaggcagtg 4081 tgaagaagaa cttaccattt gtcatggccc tgggactaac cgctgtgagg ctggtcgacc 4141 ccatcaacgt ggtgggactg ctgttgctca caaggagtgg gaagcggagc tggcccccta 4201 gcgaagtact cacagctgtt ggcctgatat gcgcattggc tggagggttc gccaaggcag 4261 atatagagat ggctgggccc atagccgcgg tcggtctgct aattgtcagt tacgtggtct 4321 caggaaagag tgtggacatg tacattgaaa gagcaggtga catcacatgg gaaaaagatg 4381 cggaagtcac tggaaacagt ccccggctcg atgtggcgct agatgagagt ggtgatttct 4441 ccctggtgga ggatgacggt ccccccatga gagagatcat actcaaggtg gtcctgatga 4501 ccatctgtgg catgaaccca atagccatac cctttgcagc tggagcgtgg tacgtatacg 4561 tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc tgctcccaag gaagtaaaaa 4621 agggggagac cacagatgga gtgtacagag taatgactcg tagactgcta ggttcaacac 4681 aagttggagt gggagttatg caagaggggg tctttcacac tatgtggcac gtcacaaaag 4741 gatccgcgct gagaagcggt gaagggagac ttgatccata ctggggagat gtcaagcagg 4801 atctggtgtc atactgtggt ccatggaagc tagatgccgc ctgggacggg cacagcgagg 4861 tgcagctctt ggccgtgccc cccggagaga gagcgaggaa catccagact ctgcccggaa 4921 tatttaagac aaaggatggg gacattggag cggttgcgct ggattaccca gcaggaactt 4981 caggatctcc aatcctagac aagtgtggga gagtgatagg actttatggc aatggggtcg 5041 tgatcaaaaa tgggagttat gttagtgcca tcacccaagg gaggagggag gaagagactc 5101 ctgttgagtg cttcgagcct tcgatgctga agaagaagca gctaactgtc ttagacttgc 5161 atcctggagc tgggaaaacc aggagagttc ttcctgaaat agtccgtgaa gccataaaaa 5221 caagactccg tactgtgatc ttagctccaa ccagggttgt cgctgctgaa atggaggaag 5281 cccttagagg gcttccagtg cgttatatga caacagcagt caatgtcacc cactctggaa 5341 cagaaatcgt cgacttaatg tgccatgcca ccttcacttc acgtctacta cagccaatca 5401 gagtccccaa ctataatctg tatattatgg atgaggccca cttcacagat ccctcaagta 5461 tagcagcaag aggatacatt tcaacaaggg ttgagatggg cgaggcggct gccatcttca 5521 tgaccgccac gccaccagga acccgtgacg catttccgga ctccaactca ccaattatgg 5581 acaccgaagt ggaagtccca gagagagcct ggagctcagg ctttgattgg gtgacggatc 5641 attctggaaa aacagtttgg tttgttccaa gcgtgaggaa cggcaatgag atcgcagctt 5701 gtctgacaaa ggctggaaaa cgggtcatac agctcagcag aaagactttt gagacagagt 5761 tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac aactgacatt tcagagatgg 5821 gcgccaactt taaagctgac cgtgtcatag attccaggag atgcctaaag ccggtcatac 5881 ttgatggcga gagagtcatt ctggctggac ccatgcctgt cacacatgcc agcgctgccc 5941 agaggagggg gcgcataggc aggaatccca ataaacctgg agatgagtat ctgtatggag 6001 gtgggtgcgc agagactgac gaagaccatg cacactggct tgaagcaaga atgctccttg 6061 acaatattta cctccaagat ggcctcatag cctcgctcta tcgacctgag gccgacaaag 6121 tagcagccat tgagggagag ttcaagctta ggacggagca aaggaagacc tttgtggaac 6181 tcatgaaaag aggagatctt cctgtttggc tggcctatca ggttgcatct gccggaataa 6241 cctacacaga tagaagatgg tgctttgatg gcacgaccaa caacaccata atggaagaca 6301 gtgtgccggc agaggtgtgg accagacacg gagagaaaag agtgctcaaa ccgaggtgga 6361 tggacgccag agtttgttca gatcatgcgg ccctgaagtc attcaaggag tttgccgctg 6421 ggaaaagagg agcggctttt ggagtgatgg aagccctggg aacactgcca ggacacatga 6481 cagagagatt ccaggaagcc attgacaacc tcgctgtgct catgcgggca gagactggaa 6541 gcaggcctta caaagccgcg gcggcccaat tgccggagac cctagagacc attatgcttt 6601 tggggttgct gggaacagtc tcgctgggaa tctttttcgt cttgatgagg aacaagggca 6661 tagggaagat gggctttgga atggtgactc ttggggccag cgcatggctc atgtggctct 6721 cggaaattga gccagccaga attgcatgtg tcctcattgt tgtgttccta ttgctggtgg 6781 tgctcatacc tgagccagaa aagcaaagat ctccccagga caaccaaatg gcaatcatca 6841 tcatggtagc agtaggtctt ctgggcttga ttaccgccaa tgaactcgga tggttggaga 6901 gaacaaagag tgacctaagc catctaatgg gaaggagaga ggagggggca accataggat 6961 tctcaatgga cattgacctg cggccagcct cagcttgggc catctatgct gccttgacaa 7021 ctttcattac cccagctgtc caacatgcag tgaccacttc atacaacaac tactccttaa 7081 tggcgatggc cacgcaagct ggagtgttgt ttggtatggg caaagggatg ccattctacg 7141 catgggactt tggagtcccg ctgctaatga taggttgcta ctcacaatta acacccctga 7201 ccctaatagt ggccatcatt ttgctcgtgg cgcactacat gtacttgatc ccagggctgc 7261 aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc tggcatcatg aagaaccctg 7321 ttgtggatgg aatagtggtg actgacattg acacaatgac aattgacccc caagtggaga 7381 aaaagatggg acaggtgcta ctcatagcag tagccgtctc cagcgccata ctgtcgcgga 7441 ccgcctgggg gtggggggag gctggggccc tgatcacagc cgcaacttcc actttgtggg 7501 aaggctctcc gaacaagtac tggaactcct ctacagccac ttcactgtgt aacattttta 7561 ggggaagtta cttggctgga gcttctctaa tctacacagt aacaagaaac gctggcttgg 7621 tcaagagacg tgggggtgga acaggagaga ccctgggaga gaaatggaag gcccgcttga 7681 accagatgtc ggccctggag ttctactcct acaaaaagtc aggcatcacc gaggtgtgca 7741 gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac gggaggccat gctgtgtccc 7801 gaggaagtgc aaagctgaga tggttggtgg agcggggata cctgcagccc tatggaaagg 7861 tcattgatct tggatgtggc agagggggct ggagttacta cgccgccacc atccgcaaag 7921 ttcaagaagt gaaaggatac acaaaaggag gccctggtca tgaagaaccc gtgttggtgc 7981 aaagctatgg gtggaacata gtccgtctta agagtggggt ggacgtcttt catatggcgg 8041 ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc atcatctagt cctgaagtgg 8101 aagaagcacg gacgctcaga gtcctctcca tggtggggga ttggcttgaa aaaagaccag 8161 gagccttttg tataaaagtg ttgtgcccat acaccagcac tatgatggaa accctggagc 8221 gactgcagcg taggtatggg ggaggactgg tcagagtgcc actctcccgc aactctacac 8281 atgagatgta ctgggtctct ggagcgaaaa gcaacaccat aaaaagtgtg tccaccacga 8341 gccagctcct cttggggcgc atggacgggc ctaggaggcc agtgaaatat gaggaggatg 8401 tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc tgaagctccc aacatgaaga 8461 tcattggtaa ccgcattgaa aggatccgca gtgagcacgc ggaaacgtgg ttctttgacg 8521 agaaccaccc atataggaca tgggcttacc atggaagcta tgaggccccc acacaagggt 8581 cagcgtcctc tctaataaac ggggttgtca ggctcctgtc aaaaccctgg gatgtggtga 8641 ctggagtcac aggaatagcc atgaccgaca ccacaccgta tggtcagcaa agagttttca 8701 aggaaaaagt ggacactagg gtgccagacc cccaagaagg cactcgtcag gttatgagca 8761 tggtctcttc ctggttgtgg aaagagctag gcaaacacaa acggccacga gtctgtacca 8821 aagaagagtt catcaacaag gttcgtagca atgcagcatt aggggcaata tttgaagagg 8881 aaaaagagtg gaagactgca gtggaagctg tgaacgatcc aaggttctgg gctctagtgg 8941 acaaggaaag agagcaccac ctgagaggag agtgccagag ttgtgtgtac aacatgatgg 9001 gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa gggcagccgc gccatctggt 9061 atatgtggct aggggctaga tttctagagt tcgaagccct tggattcttg aacgaggatc 9121 actggatggg gagagagaac tcaggaggtg gtgttgaagg gctgggatta caaagactcg 9181 gatatgtcct agaagagatg agtcgcatac caggaggaag gatgtatgca gatgacactg 9241 ctggctggga cacccgcatt agcaggtttg atctggagaa tgaagctcta atcaccaacc 9301 aaatggagaa agggcacagg gccttggcat tggccataat caagtacaca taccaaaaca 9361 aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac attatttcga 9421 gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca tttaccaacc 9481 tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg caagacttgt 9541 ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga tgggataggc 9601 tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat gataggtttg 9661 cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca caagagtgga 9721 aaccctcaac tggatgggac aactgggaag aagttccgtt ttgctcccac cacttcaaca 9781 agctccatct caaggacggg aggtccattg tggttccctg ccgccaccaa gatgaactga 9841 ttggccgggc ccgcgtctct ccaggggcgg gatggagcat ccgggagact gcttgcctag 9901 caaaatcata tgcgcaaatg tggcagctcc tttatttcca cagaagggac ctccgactga 9961 tggccaatgc catttgttca tctgtgccag ttgactgggt tccaactggg agaactacct 10021 ggtcaatcca tggaaaggga gaatggatga ccactgaaga catgcttgtg gtgtggaaca 10081 gagtgtggat tgaggagaac gaccacatgg aagacaagac cccagttgcg aaatggacag 10141 acattcccta tttgggaaaa agggaagact tgtggtgtgg atctctcata gggcacagac 10201 cgcgcaccac ctgggctgag aacattaaaa acacagtcaa catggtgcgc aggatcatag 10261 gtgatgaaga aaagtacatg gactacctat ccacccaagt tcgctacttg ggtgaagaag 10321 ggtccacacc tggagtgctg taagcaccaa tcttaatgtt gtcaggcctg ctagtcagcc 10381 acagcttggg gaaagctgtg cagcctgtga cccccccagg agaagctggg aaaccaagcc 10441 tatagtcagg ccgagaacgc catggcacgg aagaagccat gctgcctgtg agcccctcag 10501 aggacactga gtcaaaaaac cccacgcgct tggaggcgca ggatgggaaa agaaggtggc 10561 gaccttcccc acccttcaat ctggggcctg aactggagat cagctgtgga tctccagaag 10621 agggactagt ggttagagga gaccccccgg aaaacgcaaa acagcatatt ga

J Craig Venter Institute has released 3 full 2015 Zika sequences from Panama which match early sequences from Colombia / Martinque and recent Mexico isolates.

Dying babies with microcephaly linked to Zika «PREVIOUS ARTICLETrump begins to build nationwide campaign By AP May 5, 2016 Be the first to comment emailPrint The cases occurred in public hospitals in the capital and correspond to infants of mothers Guna Yala. External Source.PANAMA.-The Panama health authorities reported Thursday that there have been four cases of babies born with microcephaly related virus zika , two of whom died. The cases occurred in public hospitals in the capital and correspond to infants of mothers Guna Yala, native of Aboriginal region of the same name located in the Caribbean Panama where the first HIV infections were reported, the coordinator of international epidemiological surveillance said Ministry of Health, Dr. Israel Cedeno. In a telephone interview with The Associated Press, the doctor said that the presence of the virus in mothers and babies before birth was unknown. "Four children of pregnant women who were not on track," he added. The infection has no symptoms in some cases, he said the expert. He explained that after the births of babies with abnormalities were performed blood tests on newborns and mothers. "In some cases the mother out positive and in others the mother and baby," he said. Cedeño said that so far there have been 264 cases of Zika virus across the country, of which 11 are for pregnant women, several of them Guna Yala. Health authorities updated figures each week. http://hoy.com.do/mueren-bebes-con-microcefalia-ligada-al-zika/?utm_source=twitterfeed&utm_medium=twitter

Panama reports 4 cases of Zika-related microcephaly May. 5, 2016 3:27 PM EDT0 1 photoFILE - In this Feb. 4, 2016 file photo, Aedes aegypti mosquitoes to be tested for various diseases...Read more PANAMA CITY (AP) — Health authorities in Panama say they've identified four cases of the birth defect microcephaly linked to the Zika virus. The Health Department's chief epidemiologist says all four cases occurred among mothers of the Guna Yala indigenous group. Dr. Israel Cedeno said Thursday that two of the four babies had died. The Guna Yala Indians inhabit a stretch of low coast along Panama's Atlantic shore. In all four cases, either the mother, the baby or both tested positive for Zika. Panama has had 264 confirmed Zika cases, with 11 in pregnant women. The mosquito-borne Zika virus can cause microcephaly, a severe birth defect in which babies are born with abnormally small heads. The phenomenon was first detected in Brazil, where experts say there are nearly 1,200 confirmed cases of microcephaly. http://bigstory.ap.org/article/7c790fa758454beea0bdbe2d2a8d073c/panama-reports-4-cases-zika-related-microcephaly

May 5, 2016 DEPARTMENT OF HEALTH DAILY ZIKA UPDATE: NO NEW CASES TODAY Contact:Communications [email protected](850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the Florida Department of Health will issue a Zika virus update each week day at 2 p.m. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. There are no new cases today. Of the cases confirmed in Florida, two cases are still exhibiting symptoms. According to the CDC, symptoms associated with the Zika virus last between seven to 10 days. Based on CDC guidance, several pregnant women who have traveled to countries with local-transmission of Zika have received antibody testing, and of those, seven have tested positive for the Zika virus. The CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. It is recommended that women who are pregnant or thinking of becoming pregnant postpone travel to Zika affected areas. County Number of Cases (all travel related) Alachua 4 Brevard 2 Broward 15 Clay 1 Collier 1 Hillsborough 3 Lee 4 Martin 1 Miami-Dade 40 Orange 6 Osceola 4 Palm Beach 7 Pasco 1 Polk 3 Santa Rosa 1 Seminole 1 St. Johns 1 Cases involving pregnant women* 7 Total 102 *Counties of pregnant women will not be shared. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 1,613 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. All cases are travel-associated. There have been no locally-acquired cases of Zika in Florida. For more information on the Zika virus, click here. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. More Information on DOH action on Zika: On Feb. 3, Governor Scott directed the State Surgeon General to issue a Declaration of Public Health Emergency for the counties of residents with travel-associated cases of Zika.There have been 17 counties included in the declaration– Alachua, Brevard, Broward, Clay, Collier, Hillsborough, Lee, Martin, Miami-Dade, Orange, Osceola, Palm Beach, Pasco, Polk, Santa Rosa, Seminole and St. Johns – and will be updated as needed. DOH encourages Florida residents and visitors to protect themselves from all mosquito-borne illnesses by draining standing water; covering their skin with repellent and clothing; and covering windows with screens.DOH has a robust mosquito-borne illness surveillance system and is working with the CDC, the Florida Department of Agriculture and Consumer Services and local county mosquito control boards to ensure that the proper precautions are being taken to protect Florida residents and visitors.On April 6, Governor Rick Scott and Interim State Surgeon General Dr. Celeste Philip hosted a conference call with Florida Mosquito Control Districts to discuss ongoing preparations to fight the possible spread of the Zika virus in Florida. There were 74 attendees on the call.Florida currently has the capacity to test 6,510 people for active Zika virus and 1,229 for Zika antibodies.Federal Guidance on Zika: According to the CDC, Zika illness is generally mild with a rash, fever and joint pain. CDC researchers have concluded that Zika virus is a cause of microcephaly and other birth defects.The FDA released guidance regarding donor screening, deferral and product management to reduce the risk of transfusion-transmission of Zika virus. Additional information is available on the FDA website here.The CDC has put out guidance related to the sexual transmission of the Zika virus. This includes the CDC recommendation that if you have traveled to a country with local transmission of Zika you should abstain from unprotected sex.For more information on Zika virus, click here. About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov. http://www.floridahealth.gov/newsroom/2016/05/050516-zika-update.html

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 4, 2016) StatesTravel-associated cases* No. (%) (N=472)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona1 (<1)0 (0)Arkansas2 (<1)0 (0)California40 (8)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia3 (1)0 (0)Florida95 (20)0 (0)Georgia13 (3)0 (0)Hawaii7 (2)0 (0)Illinois13 (3)0 (0)Indiana6 (1)0 (0)Iowa5 (1)0 (0)Kansas1 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine2 (<1)0 (0)Maryland17 (4)0 (0)Massachusetts10 (2)0 (0)Michigan3 (1)0 (0)Minnesota17 (4)0 (0) http://www.cdc.gov/zika/geo/united-states.html

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 4, 2016) StatesTravel-associated cases* No. (%) (N=472)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona1 (<1)0 (0)Arkansas2 (<1)0 (0)California40 (8)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia3 (1)0 (0)Florida95 (20)0 (0)Georgia13 (3)0 (0)Hawaii7 (2)0 (0)Illinois13 (3)0 (0)Indiana6 (1)0 (0)Iowa5 (1)0 (0)Kansas1 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine2 (<1)0 (0)Maryland17 (4)0 (0)Massachusetts10 (2)0 (0) http://www.cdc.gov/zika/geo/united-states.html

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 4, 2016) StatesTravel-associated cases* No. (%) (N=472)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona1 (<1)0 (0)Arkansas2 (<1)0 (0)California40 (8)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia3 (1)0 (0)Florida95 (20)0 (0)Georgia13 (3)0 (0)Hawaii7 (2)0 (0)Illinois13 (3)0 (0)Indiana6 (1)0 (0)Iowa5 (1)0 (0)Kansas1 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine2 (<1)0 (0)Maryland17 (4)0 (0) http://www.cdc.gov/zika/geo/united-states.html

As of May 4, 2016 (5 am EST) Zika virus disease and Zika virus congenital infection are nationally notifiable conditions.This update from the CDC Arboviral Disease Branch includes provisional data reported to ArboNET for January 1, 2015 – May 4, 2016.US States Travel-associated Zika virus disease cases reported: 472Locally acquired vector-borne cases reported: 0Total: 472Pregnant: 44Sexually transmitted: 10Guillain-Barré syndrome: 1US Territories Travel-associated cases reported: 3Locally acquired cases reported: 658Total: 661Pregnant: 59Guillain-Barré syndrome: 5 Laboratory-confirmed Zika virus disease cases reported to ArboNET by state or territory — United States, 2015–2016 (as of May 4, 2016) StatesTravel-associated cases* No. (%) (N=472)Locally acquired cases† No. (%) (N=0)Alabama2 (<1)0 (0)Arizona1 (<1)0 (0)Arkansas2 (<1)0 (0)California40 (8)0 (0)Colorado2 (<1)0 (0)Connecticut1 (<1)0 (0)Delaware3 (1)0 (0)District of Columbia3 (1)0 (0)Florida95 (20)0 (0)Georgia13 (3)0 (0)Hawaii7 (2)0 (0)Illinois13 (3)0 (0)Indiana6 (1)0 (0)Iowa5 (1)0 (0)Kansas1 (<1)0 (0)Kentucky5 (1)0 (0)Louisiana4 (1)0 (0)Maine2 (<1)0 (0)Maryland17 (4)0 (0)Massachusetts10 (2)0 (0)Michigan3 (1)0 (0)Minnesota17 (4)0 (0)Mississippi3 (1)0 (0)Missouri3 (1)0 (0)Montana1 (<1)0 (0)Nebraska2 (<1)0 (0)Nevada2 (<1)0 (0)New Hampshire3 (1)0 (0)New Jersey9 (2)0 (0)New Mexico1 (<1)0 (0)New York89 (19)0 (0)North Carolina11 (3)0 (0)Ohio12 (3)0 (0)Oklahoma4 (1)0 (0)Oregon6 (1)0 (0)Pennsylvania17 (4)0 (0)South Carolina1 (<1)0 (0)Tennessee2 (<1)0 (0)Texas30 (7)0 (0)Utah2 (<1)0 (0)Vermont1 (<1)0 (0)Virginia13 (3)0 (0)Washington2 (<1)0 (0)West Virginia6 (1)0 (0) Territories(N=3)(N=658)American Samoa0 (0)14 (2)Puerto Rico2 (67)629 (96)US Virgin Islands1 (33)15 (2)*Travelers returning from affected areas, their sexual contacts, or infants infected in utero †Presumed local mosquito-borne transmission Page last reviewed: February 4, 2016Page last updated: May 5, 2016