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At least half of 40 brain scans from Brazil that Dr. William Dobyns has examined meet criteria for a rare condition known as fetal brain disruption sequence, a previously rare and highly destructive condition, according to the Seattle Children’s hospital medical geneticist and pediatric neurologist. “The brain in a fetus is growing and growing and growing,” he explained. “Then something really bad happens. The brain shrinks and the skull collapses.”It’s a condition much more severe than the microcephaly linked to Zika early on, a disorder in which babies are born with smaller-than-normal heads, Dobyns said. The growing cases are more evidence that the largely mosquito-borne virus leads to far more devastating defects than originally thought. http://www.seattletimes.com/seattle-news/health/brain-scans-show-full-horror-of-zika-defects-seattle-expert-says/

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1852518525100%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1848018480100%0.099%KU509998.3Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1845618456100%0.099%KU321639.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1843818438100%0.099%KU527068.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1842918429100%0.099%KJ776791.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1841118411100%0.099%KU991811.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1840218402100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1840218402100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1840218402100%0.099%KU365779.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1839018390100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1839018390100%0.099%KU365780.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1838418384100%0.099%KU940228.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1838418384100%0.099%KU647676.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1838418384100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1838118381100%0.099%KU501217.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183771837799%0.099%KU497555.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1837518375100%0.099%KU729217.2Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1837518375100%0.099%KU501216.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1837218372100%0.099%KU820897.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1837218372100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1837218372100%0.099%KU312312.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1836618366100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1836318363100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1836318363100%0.099%KU922923.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1836318363100%0.099%KU501215.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1835718357100%0.099%KU870645.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1835418354100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1835218352100%0.099%KU853012.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1834518345100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1833918339100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1833918339100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1833618336100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1833618336100%0.099%KU761564.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1833018330100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1832718327100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1832718327100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182911829199%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1821818218100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1821318213100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1808718087100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1778617786100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177841778499%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177331773398%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1762517625100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1747917479100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164511645199%0.096%HQ234499.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1328813288100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1327913279100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1327913279100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1327713277100%0.089%KU720415.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327213272100%0.089%KF268950.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132721327299%0.089%HQ234498.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1326313263100%0.089%KU955595.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1326113261100%0.089%DQ859059.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1325913259100%0.089%KF383119.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1325413254100%0.089%KU955592.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1325413254100%0.089%LC002520.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1323813238100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1323813238100%0.089%KU955594.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1323613236100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1321213212100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132051320599%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1319613196100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1313313133100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1312613233100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131261312699%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1293613004100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128551285597%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108441084497%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50471445687%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4985498527%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4958495827%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4650465025%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4641464125%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3440344018%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3220322017%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2874418895%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2700270014%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2060206011%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2030203011%0.099%KU179098.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds184718479%0.0100%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds184718479%0.0100%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds176117619%0.0100%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds175717579%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds175517559%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds175417549%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds175417549%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds175417549%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds175217529%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds161116118%0.0100%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142914297%0.0100%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds139113917%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds135513557%0.098%KM851038.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135313537%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1306130610%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124512456%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds124012406%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113911396%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds102010208%0.087%AF372422.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds9969967%0.089%KF270887.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9809807%0.089%KF383022.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds980198664%0.070%EF158064.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9759757%0.089%KF383026.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9679677%0.088%EU303241.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9669667%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9629627%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9629627%0.088%KF383029.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9579577%0.088%KF383033.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9399397%0.088%KF383039.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9399397%0.088%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9359357%0.088%KF383031.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome915199757%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds913189465%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome913191465%0.069%FJ753286.2Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds9069067%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds9029027%0.087%KF383043.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds8978976%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds8978976%0.088%KF383086.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8978977%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8938937%0.086%KF383042.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds890196267%0.069%EF158069.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8748744%0.099%KU978616.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8668667%0.086%KF383040.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8658656%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8658656%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8618616%0.087%KF383106.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8568566%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8568566%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8568566%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8528526%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8388386%0.086%KF383089.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8388384%0.099%AB908162.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8348346%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8348346%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8298296%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8258256%0.086%KF383098.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8148144%0.099%KU872850.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome812154660%0.068%KC754954.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds7987986%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds7927926%0.085%KF383113.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome791187954%0.068%KC754958.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome780171153%0.068%HM147824.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome760162757%0.068%EF429199.1Select seq gb|DQ176636.2|West Nile virus strain Madagascar-AnMg798, complete genome760153949%0.068%DQ176636.2Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome738167255%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome724164355%0.067%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6996993%0.099%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome681176650%0.070%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome681176650%0.070%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome677174650%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6556556%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6546546%0.080%KF383093.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6506503%0.0100%KU985088.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6486486%0.080%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6456456%8e-18080%KF383091.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome627161548%2e-17469%JQ048541.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome616161452%4e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome614164248%1e-17069%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds609160952%5e-16969%AF100462.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome601140558%8e-16769%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome601140558%8e-16769%FJ639710.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome600145942%3e-16669%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome600146442%3e-16669%GQ868633.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome598164747%1e-16569%KJ918750.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome587167948%2e-16268%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome583159948%2e-16169%JN819408.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome581154842%8e-16168%GU131887.1Select seq gb|KF955369.1|Dengue virus 2 isolate DENV-2/NI/BID-V1226/2007, complete genome580163650%3e-16068%KF955369.1Select seq gb|KF955368.1|Dengue virus 2 isolate DENV-2/NI/BID-V1222/2007, partial genome580130840%3e-16068%KF955368.1Select seq gb|JX079690.1|Dengue virus 2 isolate DENV-2/NI/BID-V3232/2007, complete genome580164050%3e-16068%JX079690.1Select seq gb|JF357907.1|Dengue virus 2 isolate DENV-2/NI/BID-V4650/2007, complete genome580163650%3e-16068%JF357907.1Select seq gb|JF357905.1|Dengue virus 2 isolate DENV-2/NI/BID-V2605/2007, complete genome580163650%3e-16068%JF357905.1Select seq gb|HQ634199.1|Dengue virus 2 isolate DENV-2/NI/BID-V3143/2007, complete genome580163650%3e-16068%HQ634199.1Select seq gb|HQ541792.1|Dengue virus 2 isolate DENV-2/NI/BID-V3223/2008, complete genome580163850%3e-16068%HQ541792.1Select seq gb|HQ541787.1|Dengue virus 2 isolate DENV-2/NI/BID-V3136/2007, complete genome580164150%3e-16068%HQ541787.1Select seq gb|FJ639836.1|Dengue virus 2 isolate DENV-2/NI/BID-V2357/2007, complete genome580163450%3e-16068%FJ639836.1Select seq gb|FJ639834.1|Dengue virus 2 isolate DENV-2/NI/BID-V2354/2007, complete genome580163650%3e-16068%FJ639834.1Select seq gb|FJ547090.1|Dengue virus 2 isolate DENV-2/NI/BID-V1311/2007, complete genome580164150%3e-16068%FJ547090.1Select seq gb|FJ478459.1|Dengue virus 2 isolate DENV-2/NI/BID-V1214/2007, complete genome580163650%3e-16068%FJ478459.1Select seq gb|FJ390391.1|Dengue virus 2 isolate DENV-2/NI/BID-V1300/2007, complete genome580163650%3e-16068%FJ390391.1Select seq gb|FJ373301.1|Dengue virus 2 isolate DENV-2/NI/BID-V1205/2007, complete genome580163650%3e-16068%FJ373301.1Select seq gb|FJ373300.1|Dengue virus 2 isolate DENV-2/NI/BID-V1194/2007, complete genome580164150%3e-16068%FJ373300.1Select seq gb|FJ205885.1|Dengue virus 2 isolate DENV-2/NI/BID-V1721/2008, complete genome580163850%3e-16068%FJ205885.1Select seq gb|FJ182014.1|Dengue virus 2 isolate DENV-2/NI/BID-V1303/2007, complete genome580163650%3e-16068%FJ182014.1Select seq gb|EU660406.1|Dengue virus 2 isolate DENV-2/NI/BID-V1207/2007, complete genome580163650%3e-16068%EU660406.1Select seq gb|EU660405.1|Dengue virus 2 isolate DENV-2/NI/BID-V1201/2007, complete genome580164150%3e-16068%EU660405.1Select seq gb|EU660404.1|Dengue virus 2 isolate DENV-2/NI/BID-V1196/2007, complete genome580163650%3e-16068%EU660404.1Select seq gb|EU621672.1|Dengue virus 2 isolate DENV-2/NI/BID-V1225/2007, complete genome580163650%3e-16068%EU621672.1Select seq gb|EU596499.1|Dengue virus 2 isolate DENV-2/NI/BID-V1215/2007, complete genome580164150%3e-16068%EU596499.1Select seq gb|EU596498.1|Dengue virus 2 isolate DENV-2/NI/BID-V1211/2007, complete genome580163650%3e-16068%EU596498.1Select seq gb|EU596497.1|Dengue virus 2 isolate DENV-2/NI/BID-V1202/2007, complete genome580162550%3e-16068%EU596497.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome578165948%9e-16068%EU482580.1Select seq gb|JF730052.1|Dengue virus 2 isolate DENV-2/NI/BID-V5073/2009, complete genome574163152%1e-15868%JF730052.1Select seq gb|JF730051.1|Dengue virus 2 isolate DENV-2/NI/BID-V5072/2009, complete genome574163152%1e-15868%JF730051.1Select seq gb|HQ705625.1|Dengue virus 2 isolate DENV-2/NI/BID-V4915/2009, complete genome574163152%1e-15868%HQ705625.1Select seq gb|HQ541786.1|Dengue virus 2 isolate DENV-2/NI/BID-V2596/2006, complete genome574163150%1e-15868%HQ541786.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome574162049%1e-15868%FJ850050.1Select seq gb|FJ639833.1|Dengue virus 2 isolate DENV-2/NI/BID-V1237/2007, complete genome574168649%1e-15868%FJ639833.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome574163450%1e-15868%EU569702.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome571164550%1e-15768%EU596483.1Select seq gb|EU482687.1|Dengue virus 2 isolate DENV-2/NI/BID-V574/2006, complete genome571164050%1e-15768%EU482687.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome569161245%5e-15768%JN819407.1Select seq gb|JF357906.1|Dengue virus 2 isolate DENV-2/NI/BID-V3227/2008, complete genome567162950%2e-15668%JF357906.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome565158448%6e-15668%FJ898466.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%5e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5355352%1e-146100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5295292%4e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5295292%4e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5295292%4e-14599%KM212963.1Select seq gb|KU844090.1|Zika virus isolate Moscow-2016 polyprotein gene, partial cds5085082%1e-138100%KU844090.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5085082%1e-138100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds5025022%6e-13799%KJ680134.1Select seq gb|KF955392.1|Dengue virus 2 isolate DENV-2/NI/BID-V3001/2007, partial genome47085328%3e-12768%KF955392.1Select seq gb|KF955343.1|Dengue virus 2 isolate DENV-2/NI/BID-V1724/2007, partial genome47060722%3e-12768%KF955343.1Select seq gb|KF955341.1|Dengue virus 2 isolate DENV-2/NI/BID-V1231/2007, partial genome47066123%3e-12768%KF955341.1Select seq gb|JX079695.1|Dengue virus 2 isolate DENV-2/NI/BID-V4646/2006, partial genome470113635%3e-12768%JX079695.1Select seq gb|JX079687.1|Dengue virus 2 isolate DENV-2/NI/BID-V3148/2007, partial genome470116036%3e-12768%JX079687.1Select seq gb|JX079696.1|Dengue virus 2 isolate DENV-2/NI/BID-V4659/2007, partial genome468122235%1e-12669%JX079696.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254252%1e-11399%KU954085.1

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Press ReleasesDepartment of Health Reports First Case of Zika in Rhode IslandThe Rhode Island Department of Health (RIDOH) today announced the first confirmed case of Zika virus in the state. The individual who tested positive, a male in his 60s, had recently traveled to Haiti, where there is active mosquito-borne transmission of Zika. "We have been closely monitoring the Zika situation internationally and have been coordinating with Rhode Island healthcare providers for months. We were fully prepared for this first case," said Director of Health Nicole Alexander-Scott, MD, MPH. "While the risk to the public is very low, we are coordinating with doctors, especially those who work with pregnant women, on how best to identify symptoms and educate patients about prevention." Measures that RIDOH has taken to prepare include: • Established a Zika Task Force that includes fetal medicine specialists from Women & Infants Hospital in February; • Issuing regular briefs to Rhode Island healthcare providers with updated guidance and information on symptoms and specimen collection; • Coordinating patient specimen collection and shipment to the Centers for Disease Control and Prevention (CDC); and • Coordinating with the Rhode Island Department of Environmental Management for increased mosquito surveillance and larvaciding. Zika is spread primarily through bites from infected mosquitoes. It can also be spread sexually. "We don't expect locally-acquired cases here because the species of mosquitos that are currently known to transmit Zika are not found in Rhode Island," said Dr. Alexander-Scott. "However, Rhode Islanders who are pregnant or are considering becoming pregnant should avoid travel to countries where there is active transmission of the virus." The virus causes symptoms including fever, rash, joint pain, headache, muscle pain, and conjunctivitis (pink eye). Approximately 80% of those who have the virus do not have any symptoms. Symptoms typically appear within three to 14 days of infection. Zika is also associated with pregnant women giving birth to babies with microcephaly and other birth defects. Microcephaly is condition when a baby's head is smaller than expected. Babies with microcephaly often have smaller brains that have not developed properly. Pregnant women or women who are considering pregnancy and have potential for exposure to Zika (from either a mosquito or a sexual partner) should seek counseling from their healthcare providers. In January, RIDOH first alerted healthcare providers to consider Zika virus in symptomatic patients who had recently traveled to areas with active mosquito-borne Zika virus transmission. Since February 1, 2016, RIDOH has been submitting specimens to CDC for testing. The Rhode Island State Health Laboratories are currently developing the capacity to test for Zika virus in accordance with CDC protocols. To prevent exposure to Zika and other mosquito-borne diseases, especially while traveling to areas with active mosquito-borne Zika transmission, people should: • Use and reapply Environmental Protection Agency (EPA)-approved bug spray containing at least 20% DEET. • Wear long-sleeved shirts and long pants. • Use permethrin-treated clothing and gear. • Stay in buildings that use air conditioning, or have window and door screens. • Sleep under a mosquito net. According to the CDC, Massachusetts has had 7 similar travel-associated cases, and Connecticut has had 1. More information about Zika virus disease is available at the Department of Health's website. A list of countries with active-transmission is available on the RIDOH's website. They are primarily in Latin America and the Caribbean.

The Rhode Island Department of Health (RIDOH) today announced the first confirmed case of Zika virus in the state. The individual who tested positive, a male in his 60s, had recently traveled to Haiti, where there is active mosquito-borne transmission of Zika. http://www.ri.gov/press/view/27330

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The state's second case of the Zika virus has been confirmed in a Newaygo County man who contracted the mosquito-borne disease while traveling. The patient, described as a "young man" whose exact age was not available Tuesday, was infected while traveling to Honduras at the end of January. Dr. Jennifer Morse, medical director for District Health Department #10, said the man suffered from symptoms within about a week of returning to Michigan. Test results by the Centers for Disease Control and Prevention came back about six weeks later. The state's first case of Zika was confirmed in a 61-year-old Ingham County woman in February. http://www.mlive.com/news/grand-rapids/index.ssf/2016/04/second_travel-related_case_of.html

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds18031803100%0.0100%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds18031803100%0.0100%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome18031803100%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome18031803100%0.0100%KU509998.3Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds18031803100%0.0100%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18031803100%0.0100%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds17991799100%0.099%KM078961.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome17971797100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds17971797100%0.099%KU647676.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds17971797100%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds17941794100%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds17941794100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds17941794100%0.099%KM078933.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome17921792100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome17921792100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds17921792100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds17921792100%0.099%KU820897.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome17921792100%0.099%KU321639.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds17921792100%0.099%KM078929.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds17861786100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome17861786100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome17861786100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome17861786100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome17861786100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome17861786100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome17861786100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome17861786100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds17861786100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds17861786100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome17861786100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds17861786100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds17861786100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds17861786100%0.099%KU365777.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome17811781100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome17811781100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds17811781100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds17811781100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds17811781100%0.099%KU312312.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds17751775100%0.099%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds17751775100%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds17751775100%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds17751775100%0.099%KU955589.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds17751775100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome17751775100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds17751775100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome17751775100%0.099%KU744693.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds17751775100%0.099%KU365778.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds17701770100%0.099%KF993678.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds17531753100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome17531753100%0.099%KU681081.3Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1746174698%0.099%KU179098.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome17141714100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds17141714100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds17141714100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome16871687100%0.098%KU681082.3Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1650165091%0.0100%KJ873160.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds15201520100%0.095%HQ234499.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1463146381%0.0100%KJ873161.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1384138477%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1378137876%0.099%KU556802.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1375137578%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1330133078%0.098%KM851038.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds1267126770%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds1258125870%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds1254125470%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds1249124969%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds1245124569%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds1242124269%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds1238123868%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds1238123869%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds1234123468%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds1223122368%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds1219121967%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds1216121667%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds1210121068%0.099%KU232291.1

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds18921892100%0.0100%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds18921892100%0.0100%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome18921892100%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome18921892100%0.0100%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18921892100%0.0100%KJ776791.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome18861886100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds18861886100%0.099%KU647676.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome18811881100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome18811881100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds18811881100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds18811881100%0.099%KU820897.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome18811881100%0.099%KU321639.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds18751875100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome18751875100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome18751875100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome18751875100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome18751875100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome18751875100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome18751875100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome18751875100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds18751875100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds18751875100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome18751875100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds18751875100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds18751875100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds18751875100%0.099%KU365777.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome18691869100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome18691869100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds18691869100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds18691869100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds18691869100%0.099%KU312312.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds18641864100%0.099%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds18641864100%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds18641864100%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds18641864100%0.099%KU955589.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds18641864100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome18641864100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds18641864100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome18641864100%0.099%KU744693.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds18641864100%0.099%KU365778.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds18581858100%0.099%KF993678.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds18421842100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome18421842100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome18031803100%0.098%KU955593.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1803180395%0.0100%KM078936.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds18031803100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds18031803100%0.098%EU545988.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1799179995%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1797179795%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1794179495%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1794179495%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1794179495%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1792179295%0.099%KM078929.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1786178696%0.099%KU179098.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome17751775100%0.098%KU681082.3Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1650165087%0.0100%KJ873160.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds16091609100%0.095%HQ234499.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1463146377%0.0100%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1419141977%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1384138473%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1378137873%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1375137577%0.098%KM851038.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds1267126767%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds1258125867%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds1254125467%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds1249124966%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds1245124566%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds1242124265%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds1238123865%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds1238123866%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds1234123465%0.099%KU232295.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1227122799%0.088%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1227122799%0.088%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1227122799%0.088%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1227122799%0.088%LC002520.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds1227122799%0.088%HQ234498.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1227122799%0.088%AY632535.2Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds1223122364%0.099%KU232288.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1223122399%0.088%KF268949.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1223122399%0.088%AF013415.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds12211221100%0.088%DQ859059.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds1219121964%0.099%KU232289.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1218121899%0.088%KU955595.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1218121899%0.088%KU955591.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds1216121664%0.099%KU232299.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1212121299%0.088%KU955592.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds1210121065%0.099%KU232291.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1206120699%0.088%KF383116.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds1205120599%0.088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1205120599%0.088%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1192119299%0.088%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1192119299%0.088%KF268948.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds1190119099%0.088%HQ234501.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1182118299%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1179117999%0.087%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds1179117999%0.087%HQ234500.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1173117399%0.087%KF383117.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1123112399%0.087%KF383115.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds99899852%0.0100%KU867812.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence84384399%0.082%KF383120.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds84184169%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds84184169%0.088%KF383086.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds80880869%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds80280269%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds79779769%0.087%KF383106.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds79179169%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds79179169%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds79179169%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds78578569%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds76976969%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds76376369%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds76376369%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds75875869%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds75275269%0.086%KF383098.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds71371369%0.085%KF383113.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds55555569%7e-15781%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds55355369%3e-15681%KF383093.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds54254269%5e-15381%KF383091.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome475121464%6e-133100%KU940227.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds43143123%1e-11998%KF258813.1

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds645645100%0.0100%KX062044.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome645645100%0.0100%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome645645100%0.0100%KU922923.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds645645100%0.0100%KU647676.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds640640100%8e-18099%KX062045.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome640640100%8e-18099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome640640100%8e-18099%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds640640100%8e-18099%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds640640100%8e-18099%KU991811.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds640640100%8e-18099%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome640640100%8e-18099%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds640640100%8e-18099%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome640640100%8e-18099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome640640100%8e-18099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome640640100%8e-18099%KU820899.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds640640100%8e-18099%KU820897.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome640640100%8e-18099%KU681081.3Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome640640100%8e-18099%KU527068.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds640640100%8e-18099%KU646828.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome640640100%8e-18099%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds640640100%8e-18099%KJ776791.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome634634100%4e-17899%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds634634100%4e-17899%KU729217.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds634634100%4e-17899%KU729218.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome634634100%4e-17899%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome634634100%4e-17899%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds634634100%4e-17899%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds634634100%4e-17899%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome634634100%4e-17899%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds634634100%4e-17899%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds634634100%4e-17899%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds634634100%4e-17899%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds634634100%4e-17899%KU365777.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds634634100%4e-17899%KU312315.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds634634100%4e-17899%KU312312.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds634634100%4e-17899%KJ634273.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds628628100%2e-17699%KX056898.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome628628100%2e-17699%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome628628100%2e-17699%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome628628100%2e-17699%KU955593.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds628628100%2e-17699%KU955590.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome628628100%2e-17699%KU926310.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds628628100%2e-17699%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds628628100%2e-17699%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds628628100%2e-17699%KU761564.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds628628100%2e-17699%KU646827.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds628628100%2e-17699%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds628628100%2e-17699%KU312313.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds628628100%2e-17699%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds628628100%2e-17699%EU545988.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome612612100%2e-17198%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds612612100%2e-17198%KF993678.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome606606100%8e-17098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds568568100%4e-15896%HQ234499.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds56256287%2e-15699%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds56056087%6e-15699%KR816333.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds56056086%6e-156100%KR815989.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds55655687%8e-15599%KR816335.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome53453486%4e-14899%KU940227.1

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds645645100%0.0100%KX062045.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome645645100%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome645645100%0.0100%KU509998.3Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds645645100%0.0100%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds645645100%0.0100%KU991811.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds645645100%0.0100%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome645645100%0.0100%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds645645100%0.0100%KU866423.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome645645100%0.0100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome645645100%0.0100%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome645645100%0.0100%KU820899.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds645645100%0.0100%KU820897.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome645645100%0.0100%KU681081.3Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome645645100%0.0100%KU527068.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds645645100%0.0100%KU646828.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome645645100%0.0100%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds645645100%0.0100%KJ776791.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds640640100%8e-18099%KX062044.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome640640100%8e-18099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome640640100%8e-18099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome640640100%8e-18099%KU922923.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds640640100%8e-18099%KU729217.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds640640100%8e-18099%KU729218.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome640640100%8e-18099%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome640640100%8e-18099%KU707826.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds640640100%8e-18099%KU647676.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds640640100%8e-18099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds640640100%8e-18099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome640640100%8e-18099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds640640100%8e-18099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds640640100%8e-18099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds640640100%8e-18099%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds640640100%8e-18099%KU365777.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds640640100%8e-18099%KU312315.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds640640100%8e-18099%KU312312.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds640640100%8e-18099%KJ634273.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds634634100%4e-17899%KX056898.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome634634100%4e-17899%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome634634100%4e-17899%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome634634100%4e-17899%KU955593.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds634634100%4e-17899%KU955590.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome634634100%4e-17899%KU926310.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds634634100%4e-17899%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds634634100%4e-17899%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds634634100%4e-17899%KU761564.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds634634100%4e-17899%KU646827.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds634634100%4e-17899%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds634634100%4e-17899%KU312313.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds634634100%4e-17899%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds634634100%4e-17899%EU545988.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome617617100%4e-17399%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds617617100%4e-17399%KF993678.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome612612100%2e-17198%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds573573100%8e-16096%HQ234499.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds56056086%6e-156100%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds55655687%8e-15599%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds55555587%3e-15499%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds55155187%4e-15399%KR816335.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome54054086%8e-15099%KU940227.1

State nows says Zika has not caused birth defects in NY Zika, a virus transmitted through mosquito bites, is affecting multiple countries in Latin America, and is expected to spread to the U.S. WATCHDOGSteve Orr, @SOrr14:40 p.m. EDT April 19, 2016214 Shares UPDATE, 4:30 P.M. TUESDAY - Reversing course, the state Department of Health said Tuesday afternoon that it would make public any confirmed birth defects linked to exposure to the Zika virus. The department also told the Democrat and Chronicle that none of the eight New York women who contracted Zika while pregnant have given birth to a child with microcephaly, the most common birth defect connected to the virus. The announcement comes after the Democrat and Chronicle noted that state health officials were unwilling to discuss birth outcomes related to Zika. That blog, which was published online Monday and in print Tuesday, appears unchanged below. # Citing privacy concerns, state health officials will not say if the Zika virus has led to any birth defects in New York. To date, 69 New Yorkers have been diagnosed with Zika, the infectious virus that has swept through the Western Hemisphere over the last year. All but one of those state residents acquired the virus while traveling in parts of the world where the mosquito-borne virus is active — primarily, the Caribbean, Mexico, Central America and South America. This figure included eight women who were pregnant at the time they became infection. The sole New York who didn't pick up the virus overseas is a state resident who acquired Zika through sexual contact with an infected man, one of a handful of people worldwide known to have become infected in this way. ROCHESTER DEMOCRAT AND CHRONICLE Zika an unlikely threat in upstate New York State health officials have verified that unusual occurrence but have declined to discuss the possibility of another: whether any of the eight pregnant women with Zika bore a child with birth defects. One of the sad realities of Zika is that infection of pregnant women can promote birth defects. Most notably, women in Brazil have given birth to thousands of babies with microcephaly, or an abnormally small head. The condition, which absent the Zika virus is relatively rare, can be accompanied by vision or speech impairments and developmental problems. Microcephaly is by far the most common birth defect associated with the virus, though experts said recently that evidence is emerging of other connected birth defects. A small number of microcephaly cases have been reported in Colombia, Panama, Cape Verde, French Polynesia and Martinique, and health experts are waiting to see whether this spring and summer will bring an eruption of microcephaly as was seen in Brazil last year. Alice Vitoria Gomes Bezerra, 3-months-old, who has microcephaly, is held by her father Joao Batista Bezerra. (Photo: Mario Tama, Getty Images) To date, two women who contracted Zika in Brazil while they were pregnant are known to have given birth to children with microcephaly — a woman from Slovenia in central Europe who gave researchers permission to write up her case in February, and an unnamed woman living in Hawaii whose situation was made public by state health officials there in January. New York health officials, though, are taking a different approach. Asked several times last week by the Democrat and Chronicle if any of the New York Zika cases had led to microcephaly or other birth defects, the health agency declined to answer. To do so, they said, could risk revealing the identity of the pregnant women. "In instances where the number of cases is small, patient confidentiality prohibits DOH from disclosing this information," the health department said in a written statement on Friday. "This involves a very small sample size of only eight pregnant women." They're not unique in this position. The Health Insurance Portability and Accountability Act (HIPAA) demands that doctors and health-industry insiders be careful not to identify patients or release medical information without permission, which has made health officials very reluctant to release data. Even in cases where names and other personally identifying information are withheld, they often cite HIPAA in instances where the number of cases is in single digits. If we want to know what sort of impact Zika has had in New York state — or what impact it will have going forward, when the number of local cases could increase considerably — we may have to look elsewhere for details.

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=zv94AJqgUct4.kT4qLMXp3SLU

NOTE: The state Department of Health will not talk about Zika birth outcomes or the one case of sexual transmission in New York. But it has released a list of Zika cases in New York by county. The list is current as of Monday. New York City 36 (NYC cases now at 40)Suffolk 13Nassau 9Dutchess 2Westchester 2Erie 1Monroe 1Onondaga 1Orange 1Putnam 1Rockland 1Tompkins 1http://www.democratandchronicle.com/story/news/local/blogs/watchdog/2016/04/18/nys-zika-birth-outcomes/83190484/

Confirmed Zika Cases in Oregon, 2016As of 4/19/2016 Travel-associated cases: 6 Oregon mosquito-acquired cases: 0 Total: 6

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&authuser=0&authuser=0&mid=zv94AJqgUct4.kT4qLMXp3SLU

Apr. 19, 2016 Department of Health Daily Zika UpdateThree New Travel-Related Cases Today in Miami-Dade CountyContact:Communications [email protected](850) 245-4111 Tallahassee, Fla. — In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the Florida Department of Health will issue a Zika virus update each week day at 2 p.m. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. There are three new travel-related cases today in Miami-Dade County. Of the cases confirmed in Florida, four cases are still exhibiting symptoms. According to the CDC, symptoms associated with the Zika virus last between seven to 10 days. Based on CDC guidance, several pregnant women who have traveled to countries with local-transmission of Zika have received antibody testing, and of those, five have tested positive for the Zika virus. The CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. It is recommended that women who are pregnant or thinking of becoming pregnant postpone travel to Zika affected areas. County Number of Cases (all travel related) Alachua 4 Brevard 2 Broward 13 Clay 1 Collier 1 Hillsborough 3 Lee 4 Miami-Dade 39 Orange 5 Osceola 4 Palm Beach 4 Polk 3 Santa Rosa 1 Seminole 1 St. Johns 1 Cases involving pregnant women* 5 Total 91 *Counties of pregnant women will not be shared. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 1,461 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. All cases are travel-associated. There have been no locally-acquired cases of Zika in Florida. For more information on the Zika virus, click here. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. More Information on DOH action on Zika: On Feb. 3, Governor Scott directed the State Surgeon General to issue a Declaration of Public Health Emergency for the counties of residents with travel-associated cases of Zika.There have been 15 counties included in the declaration– Alachua, Brevard, Broward, Clay, Collier, Hillsborough, Lee, Miami-Dade, Orange, Osceola, Palm Beach, Polk, Santa Rosa, Seminole and St. Johns – and will be updated as needed. DOH encourages Florida residents and visitors to protect themselves from all mosquito-borne illnesses by draining standing water; covering their skin with repellent and clothing; and covering windows with screens.DOH has a robust mosquito-borne illness surveillance system and is working with the CDC, the Florida Department of Agriculture and Consumer Services and local county mosquito control boards to ensure that the proper precautions are being taken to protect Florida residents and visitors.On April 6, Governor Rick Scott and Interim State Surgeon General Dr. Celeste Philip hosted a conference call with Florida Mosquito Control Districts to discuss ongoing preparations to fight the possible spread of the Zika virus in Florida. There were 74 attendees on the call.Florida currently has the capacity to test 6,697 people for active Zika virus and 1,514 for Zika antibodies.Federal Guidance on Zika: According to the CDC, Zika illness is generally mild with a rash, fever and joint pain. CDC researchers have concluded that Zika virus is a cause of microcephaly and other birth defects.The FDA released guidance regarding donor screening, deferral and product management to reduce the risk of transfusion-transmission of Zika virus. Additional information is available on the FDA website here.The CDC has put out guidance related to the sexual transmission of the Zika virus. This includes the CDC recommendation that if you have traveled to a country with local transmission of Zika you should abstain from unprotected sex.For more information on Zika virus, click here. About the Florida Department of Health The department works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health please visit www.FloridaHealth.gov. http://www.floridahealth.gov/newsroom/2016/04/Article.html

County Number of Cases (all travel related) Alachua 4 Brevard 2 Broward 13 Clay 1 Collier 1 Hillsborough 3 Lee 4 Miami-Dade 39 Orange 5 Osceola 4 Palm Beach 4 Polk 3 Santa Rosa 1 Seminole 1 St. Johns 1 Cases involving pregnant women* 5 Total 91

Office of CommunicationsTuesday, April 19, 2016 OSDH Working to Identify Potential Travel-Related Zika Virus Cases in OklahomaFor Release: April 19, 2016 – Tony Sellars, Office of Communications, 405-271-5601 State Health Department Implementing Preparedness and Testing for Zika VirusAs public health and medical professionals are learning more about the effects of the Zika virus, the Oklahoma State Department of Health (OSDH) continues to broaden efforts to work with health care providers to identify potential travel-related cases, conduct testing in the state public health laboratory, and expand mosquito surveillance programs to determine presence and burden of the type of mosquito that is most likely to spread Zika virus. Presently, the Zika virus is not being spread by mosquitoes in the US, but is spreading aggressively in regions of South and Central America and the Caribbean. As more travelers acquire Zika virus abroad and summer approaches, there is a potential for localized transmission to occur in the southern US, especially in states where the Aedes aegypti mosquito is plentiful. Collections of this type of mosquito in Oklahoma are not commonly recorded. The most significant health risk of Zika virus infection is among pregnant women and their unborn babies. A study by the Centers for Disease Control and Prevention (CDC) recently established that infection with Zika virus during pregnancy can result in fetal loss or severe birth defects involving the brain. Measures implemented by OSDH to identify potential travel-related Zika virus cases among Oklahoma residents include a screening tool for maternity clinics and protocols for health care providers to assess information on patients to determine if Zika virus testing is indicated. OSDH Acute Disease Service epidemiologists are available 24/7 to consult with health care providers statewide to determine if their patients meet the criteria for testing and arrange for testing to be conducted. OSDH has received confirmation of four travel-related cases affecting Oklahoma residents through test results provided by the CDC Arbovirus Laboratory in Ft. Collins, CO.One of the Oklahoma cases is a pregnant woman. The OSDH Public Health Laboratory has completed proficiency testing for Zika virus and has begun testing of specimens from Oklahoma patients to alleviate the delay in receiving results from the CDC. Zika virus is transmitted to people primarily through the bite of an infected Aedes aegypti mosquito. It can also be spread through sexual contact with males who have the virus or from mother to unborn child. The disease can cause fever, rash, muscle and joint aches and red eyes. These symptoms typically last several days to a week, and hospitalizations are rare. Most people exposed to Zika virus won’t develop any symptoms at all. “We are strongly recommending that pregnant women and spouses or sexual partners of women who are pregnant or might be pregnant, avoid traveling to areas where Zika virus has been identified if at all possible,” said Oklahoma State Epidemiologist Dr. Kristy Bradley. If travel cannot be avoided, persons in these high risk groups should rigorously practice mosquito bite precautions and notify their health care provider if any symptoms of illness occur within 2 weeks of travel. OSDH has also enlisted the help of the Oklahoma State University Department of Entomology to conduct surveillance in five urban regions across the state for the presence of Aedes aegypti mosquitoes. The Oklahoma City-County and Tulsa Health Departments also have plans to expand their mosquito surveillance to monitor for the presence of this Zika virus vector in addition to trapping and testing of Culex mosquitoes, which spread West Nile virus. The CDC and OSDH advise pregnant women to delay travel to foreign countries and U.S. territories where Zika virus is being transmitted. To prevent the spread of the disease, people traveling to those areas should carefully follow steps to avoid mosquito bites while there and for seven days after returning home. Mosquito exposure prevention tips while traveling to affected areas include: Use air conditioning or window/door screens to keep mosquitoes outside. If you are not able to protect yourself from mosquitoes inside your hotel or sleeping place, sleep under a mosquito bed net.Use mosquito repellents according to instructions.If weather permits, wear long-sleeved shirts and long pants.Treat clothing and gear with permethrin or purchase permethrin-treated items.Help reduce the number of mosquitoes outside your residence, hotel room or workplace by emptying standing water from containers, such as flowerpots or buckets.For more information on the Zika virus, visit www.ok.gov/health for links to fact sheets in English, Spanish and Portuguese, information from the CDC and World Health Organization (WHO) along with the most recent statistics on cases. https://www.ok.gov/triton/modules/newsroom/newsroom_article.php?id=150&article_id=20283

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The Acute Disease Service (ADS) of the Oklahoma State Department of Health (OSDH) has received confirmation that a fourth Oklahoma resident has acquired Zika during international travel to countries experiencing local transmission of the virus. One of the four cases is a pregnant woman. https://www.ok.gov/health/Disease,_Prevention,_Preparedness/Acute_Disease_Service/Disease_Information/Zika_Virus.html

The Acute Disease Service (ADS) of the Oklahoma State Department of Health (OSDH) has received confirmation that a fourth Oklahoma resident has acquired Zika during international travel to countries experiencing local transmission of the virus. One of the four cases is a pregnant woman. The OSDH ADS will post weekly Zika case statistics each Thursday by 10:00 a.m.

Zika Virus – April 19, 2016. Texas has had 31 confirmed cases of Zika virus disease. Of those, 30 were in travelers who were infected abroad and diagnosed after they returned home; one of those travelers was a pregnant woman. One case involved a Dallas County resident who had sexual contact with someone who acquired the Zika infection while traveling abroad. Case counts by county: Bexar – 3Dallas – 6Denton – 1Fort Bend – 2Grayson – 1Harris – 12Tarrant – 3Travis – 2Wise – 1