niman

Poultry and poultry meat products derived from birds originating from the State of Indiana that were slaughtered on or after January 15, 2016 are ineligible.* http://www.fsis.usda.gov/wps/portal/fsis/topics/international-affairs/exporting-products/export-library-requirements-by-country/Ukraine

Poultry originating from Dubois County, Indiana that were slaughtered on or after January 15, 2016 is ineligible. Poultry products that are heat-treated according to the table below are exempt from this restriction.* Core temperature (°C) Time Poultry meat60.0 507 seconds 65.0 42 seconds 70.0 3.5 seconds 73.9 0.51 second http://www.fsis.usda.gov/wps/portal/fsis/topics/international-affairs/exporting-products/export-library-requirements-by-country/Kazakhstan

The detection of H7N8 in a turkey farm in Dubois County, Indiana has led to series of country bans.

US | Fri Jan 15, 2016 11:48am ESTRelated: U.S., HEALTHU.S. finds first case of deadly bird flu in poultry since JuneCHICAGO | BY TOM POLANSEK An Indiana turkey flock has been infected with a deadly type of bird flu in the first new case of the disease in U.S. poultry since June, the U.S. Department of Agriculture said on Friday. The flock in Dubois County, Indiana, was infected with a strain known as H7N8, which is different from strains that caused more than 48 million chickens and turkeys to die last year, according to the USDA. Indiana officials quarantined the farm with the infected turkeys and the birds are being killed to prevent the spread of the disease, the USDA said. The outbreak will likely cause new restrictions on U.S. poultry exports. Last year's outbreak cost exporters millions of dollars in lost business as trading partners limited deals from states and counties with infected flocks. Some countries, such as China, halted all imports of U.S. poultry. The 2015 outbreak also sent U.S. egg prices to record highs and tightened supplies of turkey meat. Birds from the Indiana turkey flock will not enter the food system, according to the USDA. There are no known cases of H7N8 infections in humans, the department said. The Indiana Animal Disease Diagnostic Laboratory at Purdue University tested samples from flock, and the USDA confirmed the turkeys were infected with bird flu. The virus is thought to be spread by wild ducks, which can carry the disease without becoming infected and transmit it to poultry through feces and feathers. (Reporting by Tom Polansek; Editing by Franklin Paul and Alan Crosby) http://www.reuters.com/article/us-health-birdflu-indiana-idUSKCN0UT1Y3

Affected Counties 2016 County Date Confirmed Positive Number of Poultry Type of Operation Status DuboisJan. 14, 2016 60,000Commercial TurkeyCurrently being depopulated Current Statewide Situation Total number of affected premises = 1 Total number of affected counties = 1 Premises by County/Number of flocks Dubois : 1 Total number of birds affected in Indiana Commercial Turkey: 60,000 _________________ http://www.in.gov/boah/2390.htm Total: 60,000

Immediate notification report Report reference: REF OIE 17686, Report Date: 08/05/2015, Country : Mexico Report Summary Name of sender of the report Dr Joaquín Braulio Delgadillo Álvarez Telephone +52 55 59 05 10 00 Position Director General de Salud Animal Fax Address Avenida Cuauhtémoc N° 1230 - Piso 9 Colonia Santa Cruz Atoyac Delegación Benito Juárez CP 03310 México DF Mexico Email [email protected] Date submitted to OIE 08/05/2015 Animal type Terrestrial Date of report 08/05/2015 Disease Highly pathogenic avian influenza Date of start of the event 28/04/2015 Causal Agent Highly pathogenic avian influenza virus Date of confirmation of the event 07/05/2015 Serotype(s) H7N3 Diagnosis Clinical, Laboratory (basic) Reason First occurrence of a listed disease Clinical signs Yes Country or zone a zone or compartment Number of reported outbreaks submitted= 1, Draft= 0 Outbreak details Estado Number of outbreaks Municipio Localidad Unit Type Location Latitude Longitude Start Date End Date: CHIAPAS- (this report - submitted) - Not applicable Tuxtla Gutierrez 16.724614 -93.094339 28/04/2015 Species Measuring units Susceptible Cases Deaths Destroyed Slaughtered Plain chachalaca:Cracidae(Ortal is Vetula) Animals ... 6 6 0 0 Clay-colored thrush:Turdidae(Turdus grayi) Animals ... 2 2 0 0 Affected Population Outbreak summary: Total outbreaks = 1 (Submitted) Species Susceptible Cases Deaths Destroyed Slaughtered Plain chachalaca 6 6 0 0 Clay-colored thrush 2 2 0 0 Epidemiology Epidemiological comments Endemic wild birds were reported having been found dead in a nature reserve called “The Zapotal”; the reserve is in the State of Chiapas, consists of 100 hectares of semi-humid forest, with several species of sapotas, and shows a wide variety of native wildlife of this State. It has about 220 animal species in their natural environments and 154 species living freely in the reserve, of which 62 species of birds. During the initial investigation, three highly pathogenic avian influenza virus of H7N3 subtype were isolated with an intravenous pathogenicity index of 2.91 and 2.99. A 10 km focal and perifocal zone was established and no evidence of infection was found in commercial poultry. Under the national epidemiological surveillance program, a state active epidemiological surveillance program is on-going for 100% of the commercial poultry and, through a statistical sample size, in backyard poultry, based on serological, virological and molecular testing; no evidence of infection was found in commercial poultry or in backyard poultry. The affected species are Ortalis vetula and Turdus grayi. The epidemiological investigation continues. Source of the outbreak(s) or origin of infection • Unknown or inconclusive Measures applied Applied To be applied • control of wildlife reservoirs • movement control inside the country • screening • zoning • disinfection of infected premises/establishment(s) • no planned control measures Printed on: Tue May 12 12:23:47 CEST 2015 Page 1/3 No Yes Animals treated Vaccination Prohibited No Yes Diagnostic test results Laboratory Type Name of Laboratory Species Test Type Date Results Provided Result National laboratory Level 3 Biosecurity Laboratory, SENASICA Clay-colored thrush intravenous pathogenicity index (IVPI) test 07/05/2015 Positive National laboratory Level 3 Biosecurity Laboratory, SENASICA Clay-colored thrush virus isolation 29/04/2015 Positive National laboratory Level 3 Biosecurity Laboratory, SENASICA Plain chachalaca intravenous pathogenicity index (IVPI) test 07/05/2015 Positive National laboratory Level 3 Biosecurity Laboratory, SENASICA Plain chachalaca virus isolation 29/04/2015 Positive Future Reporting The event is continuing. Weekly follow-up reports will be submitted http://www.oie.int/wahis_2/public\..\temp\reports/en_imm_0000017686_20150512_122347.pdf

LOCUS KR821169 1723 bp cRNA linear VRL 17-JUN-2015 DEFINITION Influenza A virus (A/chicken/Guanajuato/07437-15/2015(H7N3)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KR821169 VERSION KR821169.1 GI:831182854 KEYWORDS . SOURCE Influenza A virus (A/chicken/Guanajuato/07437-15/2015(H7N3)) ORGANISM Influenza A virus (A/chicken/Guanajuato/07437-15/2015(H7N3)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1723) AUTHORS Delgadillo-Alvarez,J.B. TITLE Sequence analysis of H7N3 avian influenza viruses isolated from poultry in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 1723) AUTHORS Delgadillo-Alvarez,J.B. TITLE Direct Submission JOURNAL Submitted (20-MAY-2015) DGSA, Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (SENASICA), Av. Cuauhtemoc No. 1230 Piso 9 Colonia Santa Cruz Atoyac, Mexico, Distrito Federal 03310, Mexico COMMENT ##Assembly-Data-START## Assembly Method :: newbler v. 3.0 Assembly Name :: GS Reference Mapper Sequencing Technology :: 454 ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1723 /organism="Influenza A virus (A/chicken/Guanajuato/07437-15/2015(H7N3))" /mol_type="viral cRNA" /strain="A/chicken/Guanajuato/07437-15/2015" /serotype="H7N3" /host="chicken" /db_xref="taxon:1657908" /segment="4" /country="Mexico" /collection_date="11-Mar-2015" gene 10..1716 /gene="HA" CDS 10..1716 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="AKL91078.1" /db_xref="GI:831182855" /translation="MNTQILALIAYMLIGAKGDKICLGHHAVANGTKVNTLTERGIEV VNATETVETANTKKICTQGKRPIDLRQCGLLGTLIGPPQCDQFLKFDADLIIERREGT DVCYPGKFTNEESLRQILRRSGGIDKESMDFTYNGIRTNGTTSACKRSNPSFYAEMKW LLSDSDNATFPQMTMSYRNPRNKSALIIWGVHHSGSATEQTKLYGSGDKFITVGSSKY LQSFTPSPGPRPKVNGQSGRIDFHWLLLDPNDTVTFTFNGAFIAPDRASFFRGESIGI QSDVPLDPGCKGDCFHNGGTIVSSLPFQNINPRTVGKCPRYVKQPSLLLATGMRNVPE NPKDRKSRHRRTRGLFGAIAGFIENGWEGLIDGWYGFRHQNAQGEGTAADYKSTQSAI NQITGKLNRLIDKTNQQFELIDNEFSEIEQQIGNVINWTRDSMTEVWSYNAELLIAME NQHTIDLADSEMNKLYERVRKQLRENAEEDGTGCFEMFHKCDDQCMESIRNNTYDHTQ YRAESLQNRIQIDPVKLSSGYKDIILWFSFGASCFLLLAIAMGLVFICIKNGNMRCTI CI" mat_peptide 64..1050 /gene="HA" /product="HA1" mat_peptide 1051..1713 /gene="HA" /product="HA2" ORIGIN 1 ggatacaaaa tgaacactca aattttggca ctcattgctt atatgctaat tggagctaaa 61 ggagacaaaa tatgtcttgg gcaccatgct gtggcaaatg gaacaaaagt gaacacatta 121 acagagaggg gaatcgaagt agtaaatgcc acagaaacgg tggagactgc aaatactaag 181 aaaatatgca ctcaggggaa aagaccaata gatctaagac aatgcggact tctaggaacc 241 ctaataggac ctccccaatg cgatcaattt ctgaaatttg acgctgattt aataattgaa 301 cgaagagaag gaaccgatgt gtgttatccc gggaagttca caaatgaaga atcactgagg 361 caaatacttc gaagatcagg aggaattgat aaagagtcga tggatttcac ctataatgga 421 ataagaacca atgggacgac aagtgcttgc aaaagatcca atccttcctt ctatgcggag 481 atgaagtggt tactgtcgga ttctgacaat gcaactttcc ctcaaatgac tatgtcgtac 541 agaaatccca ggaacaaatc agctctgata atttggggag tgcatcattc tggatcggct 601 actgagcaga ccaaactcta tgggagtgga gacaagttca taacagtagg aagctcgaaa 661 tacctgcagt cattcacccc aagcccgggg ccacgaccaa aggtgaatgg gcaatcagga 721 aggatcgact ttcactggct actccttgat cccaatgaca cagtgacctt cactttcaat 781 ggggcattca tagctcctga cagagcaagc ttctttagag gagagtcaat aggaattcag 841 agtgatgttc ctttggatcc tggttgtaag ggggattgct tccacaatgg gggtacgata 901 gtgagttctc tgccattcca gaacatcaac cctagaacag tgggaaaatg ccctcggtat 961 gtcaaacagc caagcctcct tttggctaca gggatgagaa atgtcccaga gaaccccaag 1021 gataggaaga gccgacatcg aaggaccaga ggcctttttg gagcgattgc tgggttcata 1081 gagaatggat gggaaggtct cattgatgga tggtatggtt tcagacatca aaatgcacaa 1141 ggagaaggaa ctgcagctga ttacaaaagc actcaatctg cgataaatca aatcacaggc 1201 aaattgaatc gtctaattga caaaacaaat cagcagtttg aactgataga caacgaattc 1261 agtgaaatag aacaacagat tgggaatgtc attaactgga cacgcgattc aatgactgag 1321 gtatggtcgt acaatgctga attgctgata gctatggaaa atcagcacac aatagatctt 1381 gcagactcag aaatgaacaa actttatgag cgtgtaagga aacaacttag ggagaatgct 1441 gaagaggatg ggactggatg ctttgaaatg tttcataagt gtgatgatca gtgcatggag 1501 agcatcagga acaacactta tgaccatact caatacagag cggaatcatt gcagaatagg 1561 atacagatag atccagtgaa attgagtagt ggatacaaag acataatctt atggtttagc 1621 ttcggggcat catgttttct tcttctagcc attgcaatgg gattggtttt catttgcata 1681 aagaatggaa acatgcggtg cactatttgt atatagtttg aga

USDA reports first bird flu case since June, different strain than last yearKatie Little | Jacob Pramuk22 Mins AgoBreaking News17SHARES 3COMMENTSJoin the DiscussionBird flu has infected a commercial turkey flock in Indiana, though the strain is different from the one that caused an outbreak last year, the U.S. Department of Agriculture reported Friday. This marks the first highly pathogenic avian influenza (HPAI) case since June. In the past year, the U.S. poultry industry has been hit hard by avian flu. Before this latest sighting, HPAI had affected 211 commercial and 21 backyard poultry premises since December 2014. In bird flu's worst outbreak in decades, infected flocks have prompted the depopulation of 7.5 million turkeys and 42.1 million chickens. The cost to federal taxpayers has already hit more than $950 million. Jim Watson | AFP | Getty ImagesA bird flu outbreak affecting turkeys has been reported in Indiana on Jan. 15th, 2016.To help contain bird flu, the USDA has been planning for a worst-case scenario in which 500 or more commercial flocks across a wide swath of the U.S. could be affected. Its plan includes promoting improved biosecurity practices on farms, improving surveillance of wild birds (which have spread the virus in the past) and promoting rapid detection of the illness in domestic poultry before depopulating affected flocks within 24 hours. This story is developing. Please check back for further updates. Click here for the latest on the markets. — Reuters contributed to this report. http://www.cnbc.com/2016/01/15/usda-reports-first-bird-flu-case-since-june-different-strain-than-last-year.html

Information received on 13/01/2016 from Dr Nigel Gibbens, Chief Veterinary Officer, Department for Environment, Food and Rural Affairs, Department for Environment, Food and Rural Affairs, LONDON, United KingdomSummaryReport typeImmediate notificationDate of start of the event08/01/2016Date of confirmation of the event13/01/2016Report date13/01/2016Date submitted to OIE13/01/2016Reason for notificationReoccurrence of a listed diseaseDate of previous occurrence06/02/2015Manifestation of diseaseClinical diseaseCausal agentLow pathogenic avian influenza virusSerotypeH5N1Nature of diagnosisClinical, Laboratory (advanced)This event pertains toa defined zone within the countryNew outbreaks (1)Outbreak 1 (AIV 2016/01)Townhill, Parish of Dunfermline, Fife, SCOTLANDDate of start of the outbreak08/01/2016Outbreak statusContinuing (or date resolved not provided)Epidemiological unitFarmAffected animalsSpeciesSusceptibleCasesDeathsDestroyedSlaughteredBirds40000 0Affected populationFlock of approximately 40,000 57-week-old housed broiler breeder hens.Summary of outbreaksTotal outbreaks: 1Total animals affectedSpeciesSusceptibleCasesDeathsDestroyedSlaughteredBirds40000** 0Outbreak statisticsSpeciesApparent morbidity rateApparent mortality rateApparent case fatality rateProportion susceptible animals lost*Birds*********Removed from the susceptible population through death, destruction and/or slaughter**Not calculated because of missing informationEpidemiologySource of the outbreak(s) or origin of infectionUnknown or inconclusiveEpidemiological commentsThe epidemiological investigation has started and disease control measures applied. Updates will be provided in the weekly reports as further information becomes available. Control measuresMeasures appliedMovement control inside the countryScreeningTraceabilityQuarantineSurveillance outside containment and/or protection zoneSurveillance within containment and/or protection zoneZoningVaccination prohibitedNo treatment of affected animalsMeasures to be appliedDisinfection / DisinfestationStamping outOfficial destruction of animal productsOfficial disposal of carcasses, by-products and wasteDiagnostic test resultsLaboratory name and typeSpeciesTestTest dateResultAnimal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)Birdshaemagglutination inhibition test (HIT)10/01/2016PositiveAnimal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)Birdsintravenous pathogenicity index (IVPI) test PendingAnimal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)Birdsneuraminidase inhibition assay PendingAnimal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)Birdsnucleotide sequencing11/01/2016PositiveAnimal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)Birdsreal-time reverse transcriptase/polymerase chain reaction (RRT-PCR)10/01/2016PositiveAnimal and Plant Health Agency (APHA), Weybridge (OIE Reference Laboratory)Birdsvirus isolation13/01/2016PositiveFuture ReportingThe event is continuing. Weekly follow-up reports will be submitted.

USDA Confirms Highly Pathogenic H7N8 Avian Influenza in a Commercial Turkey Flock in Dubois County, IndianaLast Modified: Jan 15, 2016 PrintContacts: Andrea McNally (202)799-7033 [email protected] Lyndsay Cole (970)494-7410 [email protected] WASHINGTON, January 15, 2016 -- The United States Department of Agriculture’s (USDA) Animal and Plant Health Inspection Service (APHIS) has confirmed the presence of highly pathogenic H7N8 avian influenza (HPAI) in a commercial turkey flock in Dubois County, Indiana. This is a different strain of HPAI than the strains that caused the 2015 outbreak. There are no known cases of H7N8 infections in humans. As a reminder, the proper handling and cooking of poultry and eggs to an internal temperature of 165 ˚F kills bacteria and viruses, including HPAI. Samples from the turkey flock, which experienced increased mortality, were tested at the Indiana Animal Disease Diagnostic Laboratory at Purdue University, which is a part of USDA’s National Animal Health Laboratory Network, and confirmed by USDA this morning. APHIS is working closely with the Indiana State Board of Animal Health on a joint incident response. State officials quarantined the affected premises and depopulation of birds on the premises has already begun. Depopulation prevents the spread of the disease. Birds from the flock will not enter the food system. As part of existing avian influenza response plans, Federal and State partners are working jointly on additional surveillance and testing in the nearby area. The rapid testing and response in this incident is the result of months of planning with local, state, federal and industry partners to ensure the most efficient and effective coordination. Since the previous HPAI detections in 2015, APHIS and its state and industry partners have learned valuable lessons to help implement stronger preparedness and response capabilities. In September, APHIS published a HPAI Fall Preparedness and Response Plan that captures the results of this planning effort, organizing information on preparatory activities, policy decisions and updated strategy documents. The United States has the strongest AI surveillance program in the world, and USDA is working with its partners to actively look for the disease in commercial poultry operations, live bird markets and in migratory wild bird populations. Anyone involved with poultry production, from the small backyard to the large commercial producer, should review their biosecurity activities to assure the health of their birds. To facilitate such a review, a biosecurity self-assessment and educational materials can be found at http://www.uspoultry.org/animal_husbandry/intro.cfm In addition to practicing good biosecurity, all bird owners should prevent contact between their birds and wild birds and report sick birds or unusual bird deaths to State/Federal officials, either through their state veterinarian or through USDA’s toll-free number at 1-866-536-7593. Additional information on biosecurity for backyard flocks can be found at http://healthybirds.aphis.usda.gov. Additional background Avian influenza (AI) is caused by an influenza type A virus which can infect poultry (such as chickens, turkeys, pheasants, quail, domestic ducks, geese and guinea fowl) and is carried by free flying waterfowl such as ducks, geese and shorebirds. AI viruses are classified by a combination of two groups of proteins: hemagglutinin or “H” proteins, of which there are 16 (H1–H16), and neuraminidase or “N” proteins, of which there are 9 (N1–N9). Many different combinations of “H” and “N” proteins are possible. Each combination is considered a different subtype, and can be further broken down into different strains. AI viruses are further classified by their pathogenicity (low or high)— the ability of a particular virus strain to produce disease in domestic chickens. # USDA is an equal opportunity provider and employer. To file a complaint of discrimination, write: USDA, Office of the Assistant Secretary for Civil Rights, Office of Adjudication, 1400 Independence Ave., SW, Washington, DC 20250-9410 or call (866) 632-9992 (Toll-free Customer Service), (800) 877-8339 (Local or Federal relay), (866) 377-8642 (Relay voice users). https://www.aphis.usda.gov/wps/portal/aphis/newsroom/news/sa_news/sa_by_date/newsroom-2016/newsroom-january-2016/ct-hpai-indiana-turkeys/!ut/p/a0/04_Sj9CPykssy0xPLMnMz0vMAfGjzOK9_D2MDJ0MjDzdXUyMDTzdPA2cAtz8jT1dTPULsh0VAbiDHEw!/

USDA has reported high path H7N8 in turkey farm in Dubois Co Indiana. https://www.aphis.usda.gov/wps/portal/aphis/newsroom/news/sa_news/sa_by_date/newsroom-2016/newsroom-january-2016/ct-hpai-indiana-turkeys/!ut/p/a0/04_Sj9CPykssy0xPLMnMz0vMAfGjzOK9_D2MDJ0MjDzdXUyMDTzdPA2cAtz8jT1dTPULsh0VAbiDHEw!/

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1856518565100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1855218552100%0.099%KU321639.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773598%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176971769797%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175891758999%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641598%0.095%HQ234499.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1343413434100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1342913429100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1342013420100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1341213412100%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1337613376100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132931329398%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds132881328899%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds132721327299%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132481324899%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132301323099%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132141321498%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds131691316999%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131471314798%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129541302299%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128701287096%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108811088196%0.084%KF383120.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2852418894%0.071%DQ859064.1

LOCUS KU312312 10374 bp RNA linear VRL 13-JAN-2016 DEFINITION Zika virus isolate Z1106033 polyprotein gene, complete cds. ACCESSION KU312312 VERSION KU312312.1 GI:973447404 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10374) AUTHORS Enfissi,A., Codrington,J., Roosblad,J., Kazanji,M. and Rousset,D. TITLE Zika virus genome from the Americas JOURNAL Lancet (2016) In press REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 10374) AUTHORS Enfissi,A. and Rousset,D. TITLE Direct Submission JOURNAL Submitted (16-DEC-2015) Laboratoire de Virologie, Centre National de Reference des Arbovirus, Laboratoire associe, Institut Pasteur de la Guyane, Avenue Pasteur, Cayenne 97300, French Guiana COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10374 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Z1106033" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Suriname" /collection_date="02-Oct-2015" CDS 41..10312 /codon_start=1 /product="polyprotein" /protein_id="ALX35659.1" /db_xref="GI:973447405" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHTCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNAKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 acaggtttta ttttggattt ggaaacgaga gtttctggtc atgaaaaacc caaaaaagaa 61 atccggagga ttccggattg tcaatatgct aaaacgcgga gtagcccgtg tgagcccctt 121 tgggggcttg aagaggctgc cagccggact tctgctgggt catgggccca tcaggatggt 181 cttggcgatt ctagcctttt tgagattcac ggcaatcaag ccatcactgg gtctcatcaa 241 tagatggggt tcagtgggga aaaaagaggc tatggaaata ataaagaagt tcaagaaaga 301 tctggctgcc atgctgagaa taatcaatgc taggaaggag aagaagagac gaggcgcaga 361 tactagtgtc ggaattgttg gcctcctgct gaccacagct atggcagcgg aggtcactag 421 acgtgggagt gcatactata tgtacttgga cagaaacgat gctggggagg ccatatcttt 481 tccaaccaca ttggggatga ataagtgtta tatacagatc atggatcttg gacacacgtg 541 tgatgccacc atgagctatg aatgccctat gctggatgag ggggtggaac cagatgacgt 601 cgattgttgg tgcaacacga cgtcaacttg ggttgtgtac ggaacctgcc atcacaaaaa 661 aggtgaagca cggagatcta gaagagctgt gacgctcccc tcccattcca ctaggaagct 721 gcaaacgcgg tcgcaaacct ggttggaatc aagagaatac acaaagcact tgattagagt 781 cgaaaattgg atattcagga accctggctt cgcgttagca gcagctgcca tcgcttggct 841 tttgggaagc tcaacgagcc aaaaagtcat atacttggtc atgatactgc tgattgcccc 901 ggcatacagc atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg 961 tgggacttgg gttgatgttg tcttggaaca tggaggttgt gtcactgtaa tggcacagga 1021 caaaccgact gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag 1081 atcctactgc tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca 1141 aggtgaagcc taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt 1201 ggacagaggc tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc 1261 taagtttgca tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta 1321 ccggataatg ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg 1381 acatgaaact gatgagaata gagcgaaagt tgagataacg cccaattcac caagagccga 1441 agccaccctg ggggggtttg gaagcctagg acttgattgt gaaccgagga caggccttga 1501 cttttcagat ttgtattact tgactatgaa taacaagcac tggctggttc acaaggagtg 1561 gttccacgac attccattac cttggcacgc tggggcagac accggaactc cacactggaa 1621 caacaaagaa gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt 1681 tctagggagt caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat 1741 ggatggtgca aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa 1801 acttagattg aagggcgtgt catactcctt gtgtactgca gcgttcacat tcaccaagat 1861 cccggctgaa acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg 1921 accttgcaag gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag 1981 gttgataacc gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga 2041 acttgatcca ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac 2101 ccaccactgg cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg 2161 tgccaagaga atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc 2221 tctcaactca ttgggcaagg gcatccatca aatctttgga gcagctttca aatcattgtt 2281 tggaggaatg tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct 2341 gaacgcaaag aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt 2401 cttatccaca gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac 2461 gagatgcggt acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa 2521 gtaccatcct gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg 2581 tatctgcggg atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg 2641 ggagctcaac gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt 2701 aaaaaacccc atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca 2761 cggctggaag gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt 2821 tgtcgtggat ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt 2881 tcttgtggag gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga 2941 agattattca ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc 3001 tgtacacagt gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa 3061 gagggcccat ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac 3121 agatggaata gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca 3181 tcacaatacc agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct 3241 tgaaattcgg tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac 3301 gagaggacca tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg 3361 cagggagtgc acaatgcccc cactgtcgtt ccgggctaaa gatggctgtt ggtatggaat 3421 ggagataagg cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg 3481 atcaactgat cacatggacc acttctccct tggagtgctt gtgattctgc tcatggtgca 3541 ggaagggttg aagaagagaa tgaccacaaa gatcatcata agcacatcaa tggcagtgct 3601 ggtagctatg atcctgggag gattttcaat gagtgacctg gctaagcttg caattttgat 3661 gggtgccacc ttcgcggaaa tgaacactgg aggagatgta gctcatctgg cgctgatagc 3721 ggcattcaaa gtcagaccag cgttgctggt atctttcatc ttcagagcta attggacacc 3781 ccgtgaaagc atgctgctgg ccttggcctc gtgtcttttg caaactgcga tctccgcctt 3841 ggaaggcgac ctgatggttc tcatcaatgg ttttgctttg gcctggttgg caatacgagc 3901 gatggttgtt ccacgcactg ataacatcac cttggcaatc ctggctgctc tgacaccact 3961 ggcccggggc acactgcttg tggcgtggag agcaggcctt gctacttgcg gggggtttat 4021 gctcctctct ctgaagggaa aaggcagtgt gaagaagaac ttaccatttg tcatggccct 4081 gggactaacc gctgtgaggc tggtcgaccc catcaacgtg gtgggactgc tgttgctcac 4141 aaggagtggg aagcggagct ggccccctag cgaagtactc acagctgttg gcctgatatg 4201 cgcattggct ggagggttcg ccaaggcaga tatagagatg gctgggccca tggccgcggt 4261 cggtctgcta attgtcagtt acgtggtctc aggaaagagt gtggacatgt acattgaaag 4321 agcaggtgac atcacatggg aaaaagatgc ggaagtcact ggaaacagtc cccggctcga 4381 tgtggcgcta gatgagagtg gtgatttctc cctggtggag gatgacggtc cccccatgag 4441 agagatcata ctcaaggtgg tcctgatgac catctgtggc atgaacccaa tagccatacc 4501 ctttgcagct ggagcgtggt acgtatacgt gaagactgga aaaaggagtg gtgctctatg 4561 ggatgtgcct gctcccaagg aagtaaaaaa gggggagacc acagatggag tgtacagagt 4621 aatgactcgt agactgctag gttcaacaca agttggagtg ggagttatgc aagagggggt 4681 ctttcacact atgtggcacg tcacaaaagg atccgcgctg agaagcggtg aagggagact 4741 tgatccatac tggggagatg tcaagcagga tctggtgtca tactgtggtc catggaagct 4801 agatgccgcc tgggacgggc acagcgaggt gcagctcttg gccgtgcccc ccggagagag 4861 agcgaggaac atccagactc tgcccggaat atttaagaca aaggatgggg acattggagc 4921 ggttgcgctg gattacccag caggaacttc aggatctcct atcctagaca agtgtgggag 4981 agtgatagga ctttatggca atggggtcgt gatcaaaaat gggagttatg ttagtgccat 5041 cacccaaggg aggagggagg aagagactcc tgttgagtgc ttcgagcctt cgatgctgaa 5101 gaagaagcag ctaactgtct tagacttgca tcctggagct gggaaaacca ggagagttct 5161 tcctgaaata gtccgtgaag ccataaaaac aagactccgt actgtgatct tagctccaac 5221 cagggttgtc gctgctgaaa tggaggaggc ccttagaggg cttccagtgc gttatatgac 5281 aacagcagtc aatgtcaccc actctggaac agaaatcgtc gacttaatgt gccatgccac 5341 cttcacttcg cgtctactac agccaatcag agtccccaac tataatctgt atattatgga 5401 tgaggcccac ttcacagatc cctcaagtat agcagcaaga ggatacattt caacaagggt 5461 tgagatgggc gaggcggccg ccatcttcat gaccgccacg ccaccaggaa cccgtgacgc 5521 atttccggac tccaactcac caattatgga caccgaagtg gaagtcccag agagagcctg 5581 gagctcaggc tttgattggg tgacggatca ttctggaaaa acagtttggt ttgttccaag 5641 cgtgaggaac ggcaatgaga tcgcagcttg tctgacaaag gctggaaaac gggtcataca 5701 gctcagcaga aagacttttg agacagagtt ccagaaaaca aaacatcaag agtgggactt 5761 tgtcgtgaca actgacattt cagagatggg cgccaacttt aaagctgacc gtgtcataga 5821 ttccaggaga tgcctaaagc cggtcatact tgatggcgag agagtcattc tggctggacc 5881 catgcctgtc acacatgcca gcgctgccca gaggaggggg cgcataggca ggaatcccaa 5941 caaacctgga gatgagtatc tgtatggagg tgggtgcgca gagactgacg aagaccatgc 6001 acactggctt gaagcaagaa tgctccttga caatatttac ctccaagatg gcctcatagc 6061 ctcgctctat cgacctgagg ccgacaaagt agcagccatt gagggagagt tcaagcttag 6121 gacggagcaa aggaagacct ttgtggaact catgaaaaga ggagatcttc ctgtttggct 6181 ggcctatcag gttgcatctg ccggaataac ctacacagat agaagatggt gctttgatgg 6241 cacgaccaac aacaccataa tggaagacag tgtgccggca gaagtgtgga ccagacacgg 6301 agagaaaaga gtgctcaaac cgaggtggat ggacgccaga gtttgttcag atcatgcggc 6361 cctgaagtca ttcaaggagt ttgccgctgg gaaaagagga gcggcttttg gagtgatgga 6421 agccctggga acactgccag gacacatgac agagagattc caggaagcca ttgacaacct 6481 cgctgtgctc atgcgggcag agactggaag caggccttac aaagccgcgg cggcccaatt 6541 gccggagacc ctagagacca ttatgctttt ggggttgctg ggaacagtct cgctgggaat 6601 cttcttcgtc ttgatgagga acaagggcat agggaagatg ggctttggaa tggtgactct 6661 tggggccagc gcatggctca tgtggctctc ggaaattgag ccagccagaa ttgcatgtgt 6721 cctcattgtt gtgttcctat tgctggtggt gctcatacct gagccagaaa agcaaagatc 6781 tccccaggac aaccaaatgg caatcatcat catggtagca gtaggtcttc tgggcttgat 6841 taccgccaat gaactcggat ggttggagag aacaaagagt gacctaagcc atctaatggg 6901 aaggagagag gagggggcaa ccataggatt ctcaatggac attgacctgc ggccagcctc 6961 agcttgggcc atctatgctg ccttgacaac tttcattacc ccagccgtcc aacatgcagt 7021 gaccacctca tacaacaact actccttaat ggcgatggcc acgcaagctg gagtgttgtt 7081 tggtatgggc aaagggatgc cattctacgc atgggacttt ggagtcccgc tgctaatgat 7141 aggttgctac tcacaattaa cacccctgac cctaatagtg gccatcattt tgctcgtggc 7201 gcactacatg tacttgatcc cagggctgca ggcagcagct gcgcgtgctg cccagaagag 7261 aacggcagct ggcatcatga agaaccctgt tgtggatgga atagtggtga ctgacattga 7321 cacaatgaca attgaccccc aagtggagaa aaagatggga caggtgctac tcatagcagt 7381 agccgtctcc agcgccatac tgtcgcggac cgcctggggg tggggggagg ctggggccct 7441 gatcacagcc gcaacttcca ctttgtggga aggctctccg aacaagtact ggaactcctc 7501 tacagccact tcactgtgta acatttttag gggaagttac ttggctggag cttctctaat 7561 ctacacagta acaagaaacg ctggcttggt caagagacgt gggggtggaa caggagagac 7621 cctgggagag aaatggaagg cccgcttgaa ccagatgtcg gccctggagt tctactccta 7681 caaaaagtca ggcatcaccg aggtgtgcag agaagaggcc cgccgcgccc tcaaggacgg 7741 tgtggcaacg ggaggccatg ctgtgtcccg aggaagtgca aagctgagat ggttggtgga 7801 gcggggatac ctgcagccct atggaaaggt cattgatctt ggatgtggca gagggggctg 7861 gagttactac gccgccacca tccgcaaagt tcaagaagtg aaaggataca caaaaggagg 7921 ccctggtcat gaagaacccg tgttggtgca aagctatggg tggaacatag tccgtcttaa 7981 gagtggggtg gacgtctttc atatggcggc tgagccgtgt gacacgttgc tgtgtgacat 8041 aggtgagtca tcatctagtc ctgaagtgga agaagcacgg acgctcagag tcctctccat 8101 ggtgggggat tggcttgaaa aaagaccagg agccttttgt ataaaagtgt tgtgcccata 8161 caccagcact atgatggaaa ccctggagcg actgcagcgt aggtatgggg gaggactggt 8221 cagagtgcca ctctcccgca actctacaca tgagatgtac tgggtctctg gagcgaaaag 8281 caacaccata aaaagtgtgt ccaccacgag ccagctcctc ttggggcgca tggacgggcc 8341 taggaggcca gtgaaatatg aggaggatgt gaatctcggc tctggcacgc gggctgtggt 8401 aagctgcgct gaagctccca acatgaagat cattggtaac cgcattgaaa ggatccgcag 8461 tgagcacgcg gaaacgtggt tctttgacga gaaccaccca tataggacat gggcttacca 8521 tggaagctat gaggccccca cacaagggtc agcgtcctct ctaataaacg gggttgtcag 8581 gctcctgtca aaaccctggg atgtggtgac tggagtcaca ggaatagcca tgaccgacac 8641 cacaccgtat ggtcagcaaa gagttttcaa ggaaaaagtg gacactaggg tgccagaccc 8701 ccaagaaggc actcgtcagg ttatgagcat ggtctcttcc tggttgtgga aagagctagg 8761 caaacacaaa cggccacgag tctgtaccaa agaagagttc atcaacaagg ttcgtagcaa 8821 tgcagcatta ggggcaatat ttgaagagga aaaagagtgg aagactgcag tggaagctgt 8881 gaacgatcca aggttctggg ctctagtgga caaggaaaga gagcaccacc tgagaggaga 8941 gtgccagagt tgtgtgtaca acatgatggg aaaaagagaa aagaaacaag gggaatttgg 9001 aaaggccaag ggcagccgcg ccatctggta tatgtggcta ggggctagat ttctagagtt 9061 cgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg 9121 tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga gtcgtatacc 9181 aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatta gcaggtttga 9241 tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt 9301 ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa 9361 agggaaaaca gttatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt 9421 cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc 9481 tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgactaa 9541 ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg 9601 cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg 9661 aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga 9721 agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga ggtccattgt 9781 ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc caggggcggg 9841 atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt ggcagctcct 9901 ttatttccac agaagggacc tccgactgat ggccaatgcc atttgttcat ctgtgccagt 9961 tgactgggtt ccaactggga gaactacctg gtcaatccat ggaaagggag aatggatgac 10021 cactgaagac atgcttgtgg tgtggaacag agtgtggatt gaggagaacg accacatgga 10081 agacaagacc ccagttacga aatggacaga cattccctat ttgggaaaaa gggaagactt 10141 gtggtgtgga tctctcatag ggcacagacc gcgcaccacc tgggctgaga acattaaaaa 10201 cacagtcaac atggtgcgca ggatcatagg tgatgaagaa aagtacatgg actacctatc 10261 cacccaagtt cgctacttgg gtgaagaagg gtctacacct ggagtgctgt aagcaccaat 10321 cttaatgttg tcaggcctgc tagtcagcca cagcttgggg aaagctgtgc agcc

Institut Pasteur de la Guyane in French Guiana has released a full 2015 Zika sequence from Suriname.

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1925419254100%0.0100%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds190351903599%0.099%KJ776791.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177751777596%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177301773094%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds176221762296%0.098%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164481644896%0.096%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds138981389899%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds138891388999%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID138851388599%0.089%LC002520.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds138811388199%0.089%KF268950.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome138271382799%0.089%AY632535.2Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds132751327596%0.089%KF383115.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132721327296%0.089%HQ234498.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132701327096%0.089%DQ859059.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds132591325996%0.089%KF383119.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132161321696%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132091320996%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds131371313796%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131291312996%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129361300496%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128551285593%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108411084193%0.084%KF383120.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2874419191%0.071%DQ859064.

LOCUS KU321639 10676 bp RNA linear VRL 28-DEC-2015 DEFINITION Zika virus strain ZikaSPH2015, complete genome. ACCESSION KU321639 VERSION KU321639.1 GI:969945756 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Spondweni virus group. REFERENCE 1 (bases 1 to 10676) AUTHORS Esposito,D.L.A., Addas-Carvalho,M., Barjas-Castro,M.D.L., Angerami,R.N., Resende,M.R., Stucchi,R.S.B., Boin,I.F.S.F., Katz,G., Souza,R.P., Cunha,M.S., Suzuki,A., Nogueira,J.S., Rocco,I.M., Maeda,A.Y., Vasami,F.G.S. and Fonseca,B.A.L. TITLE Direct Submission JOURNAL Submitted (21-DEC-2015) Internal Medicine, University of Sao Paulo, Avenida Bandeirantes 3900, Ribeirao Preto, Sao Paulo 14049100, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. R8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10676 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZikaSPH2015" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" 5'UTR 1..105 CDS 106..10377 /note="contains structural and non-structural proteins" /codon_start=1 /product="polyprotein" /protein_id="ALU33341.1" /db_xref="GI:969945757" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDIVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SHFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDYSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATMGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLMAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 106..480 /product="capsid" mat_peptide 478..750 /product="propeptide" mat_peptide 751..975 /product="membane protein" mat_peptide 976..2490 /product="envelope protein" mat_peptide 2491..3576 /product="NS1" mat_peptide 3577..4230 /product="NS2A" mat_peptide 4231..4662 /product="NS2B" mat_peptide 4663..6471 /product="NS3" mat_peptide 6472..6912 /product="NS4A" mat_peptide 6913..8418 /product="NS4B" mat_peptide 8419..10374 /product="NS5" 3'UTR 10378..10676 ORIGIN 1 gttgttactg ttgctgactc agactgcgac agttcgagtt tgaagcgaaa gctagcaaca 61 gtatcaacag gttttatttg gatttggaaa cgagagtttc tggtcatgaa aaacccaaaa 121 aagaaatccg gaggattccg gattgtcaat atgctaaaac gcggagtagc ccgtgtgagc 181 ccctttgggg gcttgaagag gctgccagcc ggacttctgc tgggtcatgg gcccatcagg 241 atggtcttgg caattctagc ctttttgaga ttcacggcaa tcaagccatc actgggtctc 301 atcaatagat ggggttcagt ggggaaaaaa gaggctatgg aaataataaa gaagttcaag 361 aaagatctgg ctgccatgct gagaataatc aatgctagga aggagaagaa gagacggggc 421 gcagatacta gtgtcggaat tgttggcctc ctgctgacca cagctatggc agcggaggtc 481 actagacgtg ggagtgcata ctatatgtac ttggacagaa acgatgctgg ggaggccata 541 tcttttccaa ccacattggg gatgaataag tgttatatac agatcatgga tcttggacac 601 atgtgtgatg ccaccatgag ctatgaatgc cctatgctgg atgagggggt ggaaccagat 661 gacgtcgatt gttggtgcaa cacgacgtca acttgggttg tgtacggaac ctgccatcac 721 aaaaaaggtg aagcacggag atctagaaga gctgtgacgc tcccctccca ttccactagg 781 aagctgcaaa cgcggtcgca aacctggttg gaatcaagag aatacacaaa gcacttgatt 841 agagtcgaaa attggatatt caggaaccct ggcttcgcgt tagcagcagc tgccatcgct 901 tggcttttgg gaagctcaac gagccaaaaa gtcatatact tggtcatgat actgctgatt 961 gccccggcat acagcatcag gtgcatagga gtcagcaata gggactttgt ggaaggtatg 1021 tcaggtggga cttgggttga tattgtcttg gaacatggag gttgtgtcac cgtaatggca 1081 caggacaaac cgactgtcga catagagctg gttacaacaa cagtcagcaa catggcggag 1141 gtaagatcct actgctatga ggcatcaata tcagacatgg cttcggacag ccgctgccca 1201 acacaaggtg aagcctacct tgacaagcaa tcagacactc aatatgtctg caaaagaacg 1261 ttagtggaca gaggctgggg aaatggatgt ggactttttg gcaaagggag tctggtgaca 1321 tgcgctaagt ttgcatgctc caagaaaatg accgggaaga gcatccagcc agagaatctg 1381 gagtaccgga taatgctgtc agttcatggc tcccagcaca gtgggatgat cgttaatgac 1441 acaggacatg aaactgatga gaatagagcg aaggttgaga taacgcccaa ttcaccaaga 1501 gccgaagcca ccctgggggg ttttggaagc ctaggacttg attgtgaacc gaggacaggc 1561 cttgactttt cagatttgta ttacttgact atgaataaca agcactggtt ggttcacaag 1621 gagtggttcc acgacattcc attaccttgg cacgctgggg cagacaccgg aactccacac 1681 tggaacaaca aagaagcact ggtagagttc aaggacgcac atgccaaaag gcaaactgtc 1741 gtggttctag ggagtcaaga aggagcagtt cacacggccc ttgctggagc tctggaggct 1801 gagatggatg gtgcaaaggg aaggctgtcc tctggccact tgaaatgtcg cctgaaaatg 1861 gataaactta gattgaaggg cgtgtcatac tccttgtgta ccgcagcgtt cacattcacc 1921 aagatcccgg ctgaaacact gcacgggaca gtcacagtgg aggtacagta cgcagggaca 1981 gatggacctt gcaaggttcc agctcagatg gcggtggaca tgcaaactct gaccccagtt 2041 gggaggttga taaccgctaa ccccgtaatc actgaaagca ctgagaactc taagatgatg 2101 ctggaacttg atccaccatt tggggactct tacattgtca taggagtcgg ggagaagaag 2161 atcacccacc actggcacag gagtggcagc accattggaa aagcatttga agccactgtg 2221 agaggtgcca agagaatggc agtcttggga gacacagcct gggactttgg atcagttgga 2281 ggcgctctca actcattggg caagggcatc catcaaattt ttggagcagc tttcaaatca 2341 ttgtttggag gaatgtcctg gttctcacaa attctcattg gaacgttgct gatgtggttg 2401 ggtctgaaca caaagaatgg atctatttcc cttatgtgct tggccttagg gggagtgttg 2461 atcttcttat ccacagccgt ctctgctgat gtggggtgct cggtggactt ctcaaagaag 2521 gagacgagat gcggtacagg ggtgttcgtc tataacgacg ttgaagcctg gagggacagg 2581 tacaagtacc atcctgactc cccccgtaga ttggcagcag cagtcaagca agcctgggaa 2641 gatggtatct gcgggatctc ctctgtttca agaatggaaa acatcatgtg gagatcagta 2701 gaaggggagc tcaacgcaat cctggaagag aatggagttc aactgacggt cgttgtggga 2761 tctgtaaaaa accccatgtg gagaggtcca cagagattgc ccgtgcctgt gaacgagctg 2821 ccccacggct ggaaggcttg ggggaaatcg cacttcgtca gagcagcaaa gacaaataac 2881 agctttgtcg tggatggtga cacactgaag gaatgcccac tcaaacatag agcatggaac 2941 agctttcttg tggaggatca tgggttcggg gtatttcaca ctagtgtctg gctcaaggtt 3001 agagaagatt attcattaga gtgtgatcca gccgttattg gaacagctgt taagggaaag 3061 gaggctgtac acagtgatct aggctactgg attgagagtg agaagaatga cacatggagg 3121 ctgaagaggg cccatctgat cgagatgaaa acatgtgaat ggccaaagtc ccacacattg 3181 tggacagatg gaatagaaga gagtgatctg atcataccca agtctttagc tgggccactc 3241 agccatcaca ataccagaga gggctacagg acccaaatga aagggccatg gcacagtgaa 3301 gagcttgaaa ttcggtttga ggaatgccca ggcactaagg tccacgtgga ggaaacatgt 3361 ggaacaagag gaccatctct gagatcaacc actgcaagcg gaagggtgat cgaggaatgg 3421 tgctgcaggg agtgcacaat gcccccactg tcgttccggg ctaaagatgg ctgttggtat 3481 ggaatggaga taaggcccag gaaagaacca gaaagcaact tagtaaggtc aatggtgact 3541 gcaggatcaa ctgatcacat ggatcacttc tcccttggag tgcttgtgat tctgctcatg 3601 gtgcaggaag ggctgaagaa gagaatgacc acaaagatca tcataagcac atcaatggca 3661 gtgctggtag ctatgatcct gggaggattt tcaatgagtg acctggctaa gcttgcaatt 3721 ttgatgggtg ccaccttcgc ggaaatgaac actggaggag atgtagctca tctggcgctg 3781 atagcggcat tcaaagtcag accagcgttg ctggtatctt tcatcttcag agctaattgg 3841 acaccccgtg aaagcatgct gctggccttg gcctcgtgtc ttttgcaaac tgcgatctcc 3901 gccttggaag gcgacctgat ggttctcatc aatggttttg ctttggcctg gttggcaata 3961 cgagcgatgg ttgttccacg cactgataac atcaccttgg caatcctggc tgctctgaca 4021 ccactggccc ggggcacact gcttgtggcg tggagagcag gccttgctac ttgcgggggg 4081 tttatgctcc tctctctgaa gggaaaaggc agtgtgaaga agaacttacc atttgtcatg 4141 gccctgggac taaccgctgt gaggctggtc gaccccatca acgtggtggg gctgctgttg 4201 ctcacaagga gtgggaagcg gagctggccc cctagcgaag tactcacagc tgttggcctg 4261 atatgcgcat tggctggagg gttcgccaag gcagatatag agatggctgg gcccatggcc 4321 gcggtcggtc tgctaattgt cagttacgtg gtctcaggaa agagtgtgga catgtacatt 4381 gaaagagcag gtgacatcac atgggaaaaa gatgcggaag tcactggaaa cagtccccgg 4441 ctcgatgtgg cgctagatga gagtggtgat ttctccctgg tggaggatga cggtcccccc 4501 atgagagaga tcatactcaa ggtggtcctg atgaccatct gtggcatgaa cccaatagcc 4561 ataccctttg cagctggagc gtggtacgta tacgtgaaga ctggaaaaag gagtggtgct 4621 ctatgggatg tgcctgctcc caaggaagta aaaaaggggg agaccacaga tggagtgtac 4681 agagtaatga ctcgtagact gctaggttca acacaagttg gagtgggagt tatgcaagag 4741 ggggtctttc acactatgtg gcacgtcaca aaaggatccg cgctgagaag cggtgaaggg 4801 agacttgatc catactgggg agatgtcaag caggatctgg tgtcatactg tggtccatgg 4861 aagctagatg ccgcctggga cgggcacagc gaggtgcagc tcttggccgt gccccccgga 4921 gagagagcga ggaacatcca gactctgccc ggaatattta agacaaagga tggggacatt 4981 ggagcggttg cgctggatta cccagcagga acttcaggat ctccaatcct agacaagtgt 5041 gggagagtga taggacttta tggcaatggg gtcgtgatca aaaatgggag ttatgttagt 5101 gccatcaccc aagggaggag ggaggaagag actcctgttg agtgcttcga gccttcgatg 5161 ctgaagaaga agcagctaac tgtcttagac ttgcatcctg gagctgggaa aaccaggaga 5221 gttcttcctg aaatagtccg tgaagccata aaaacaagac tccgtactgt gatcttagct 5281 ccaaccaggg ttgtcgctgc tgaaatggag gaagccctta gagggcttcc agtgcgttat 5341 atgacaacag cagtcaatgt cacccactct ggaacagaaa tcgtcgactt aatgtgccat 5401 gccaccttca cttcacgtct actacagcca atcagagtcc ccaactataa tctgtatatt 5461 atggatgagg cccacttcac agatccctca agtatagcag caagaggata catttcaaca 5521 agggttgaga tgggcgaggc ggctgccatc ttcatgaccg ccacgccacc aggaacccgt 5581 gacgcatttc cggactccaa ctcaccaatt atggacaccg aagtggaagt cccagagaga 5641 gcctggagct caggctttga ttgggtgacg gattattctg gaaaaacagt ttggtttgtt 5701 ccaagcgtga ggaacggcaa tgagatcgca gcttgtctga caaaggctgg aaaacgggtc 5761 atacagctca gcagaaagac ttttgagaca gagttccaga aaacaaaaca tcaagagtgg 5821 gactttgtcg tgacaactga catttcagag atgggcgcca actttaaagc tgaccgtgtc 5881 atagattcca ggagatgcct aaagccggtc atacttgatg gcgagagagt cattctggct 5941 ggacccatgc ctgtcacaca tgccagcgct gcccagagga gggggcgcat aggcaggaat 6001 cccaacaaac ctggagatga gtatctgtat ggaggtgggt gcgcagagac tgacgaagac 6061 catgcacact ggcttgaagc aagaatgctc cttgacaata tttacctcca agatggcctc 6121 atagcctcgc tctatcgacc tgaggccgac aaagtagcag ccattgaggg agagttcaag 6181 cttaggacgg agcaaaggaa gacctttgtg gaactcatga aaagaggaga tcttcctgtt 6241 tggctggcct atcaggttgc atctgccgga ataacctaca cagatagaag atggtgcttt 6301 gatggcacga ccaacaacac cataatggaa gacagtgtgc cggcagaggt gtggaccaga 6361 cacggagaga aaagagtgct caaaccgagg tggatggacg ccagagtttg ttcagatcat 6421 gcggccctga agtcattcaa ggagtttgcc gctgggaaaa gaggagcggc ttttggagtg 6481 atggaagccc tgggaacact gccaggacac atgacagaga gattccagga agccattgac 6541 aacctcgctg tgctcatgcg ggcagagact ggaagcaggc cttacaaagc cgcggcggcc 6601 caattgccgg agaccctaga gaccattatg cttttggggt tgctgggaac agtctcgctg 6661 ggaatctttt tcgtcttgat gaggaacaag ggcataggga agatgggctt tggaatggtg 6721 actcttgggg ccagcgcatg gctcatgtgg ctctcggaaa ttgagccagc cagaattgca 6781 tgtgtcctca ttgttgtgtt cctattgctg gtggtgctca tacctgagcc agaaaagcaa 6841 agatctcccc aggacaacca aatggcaatc atcatcatgg tagcagtagg tcttctgggc 6901 ttgattaccg ccaatgaact cggatggttg gagagaacaa agagtgacct aagccatcta 6961 atgggaagga gagaggaggg ggcaaccatg ggattctcaa tggacattga cctgcggcca 7021 gcctcagctt gggccatcta tgctgccttg acaactttca ttaccccagc cgtccaacat 7081 gcagtgacca cttcatacaa caactactcc ttaatggcga tggccacgca agctggagtg 7141 ttgtttggta tgggcaaagg gatgccattc tacgcatggg actttggagt cccgctgcta 7201 atgataggtt gctactcaca attaacgccc ctgaccctaa tagtggccat cattttgctc 7261 gtggcgcact acatgtactt gatcccaggg ctgcaggcag cagctgcgcg tgctgcccag 7321 aagagaacgg cagctggcat catgaagaac cctgttgtgg atggaatagt ggtgactgac 7381 attgacacaa tgacaattga cccccaagtg gagaaaaaga tgggacaggt gctactcatg 7441 gcagtagccg tctccagcgc catactgtcg cggaccgcct gggggtgggg ggaggctggg 7501 gccctgatca cagccgcaac ttccactttg tgggaaggct ctccgaacaa gtactggaac 7561 tcctctacag ccacttcact gtgtaacatt tttaggggaa gttacttggc tggagcttct 7621 ctaatctaca cagtaacaag aaacgctggc ttggtcaaga gacgtggggg tggaacagga 7681 gagaccctgg gagagaaatg gaaggcccgc ttgaaccaga tgtcggccct ggagttctac 7741 tcctacaaaa agtcaggcat caccgaggtg tgcagagaag aggcccgccg cgccctcaag 7801 gacggtgtgg caacgggagg ccatgctgtg tcccgaggaa gtgcaaagct gagatggttg 7861 gtggagcggg gatacctgca gccctatgga aaggtcattg atcttggatg tggcagaggg 7921 ggctggagtt actacgccgc caccatccgc aaagttcaag aagtgaaagg atacacaaaa 7981 ggaggccctg gtcatgaaga acccgtgttg gtgcaaagct atgggtggaa catagtccgt 8041 cttaagagtg gggtggacgt ctttcatatg gcggctgagc cgtgtgacac gttgctgtgt 8101 gacataggtg agtcatcatc tagtcctgaa gtggaagaag cacggacgct cagagtcctc 8161 tccatggtgg gggattggct tgaaaaaaga ccaggagcct tttgtataaa agtgttgtgc 8221 ccatacacca gcactatgat ggaaaccctg gagcgactgc agcgtaggta tgggggagga 8281 ctggtcagag tgccactctc ccgcaactct acacatgaga tgtactgggt ctctggagcg 8341 aaaagcaaca ccataaaaag tgtgtccacc acgagccagc tcctcttggg gcgcatggac 8401 gggcctagga ggccagtgaa atatgaggag gatgtgaatc tcggctctgg cacgcgggct 8461 gtggtaagct gcgctgaagc tcccaacatg aagatcattg gtaaccgcat tgaaaggatc 8521 cgcagtgagc acgcggaaac gtggttcttt gacgagaacc acccatatag gacatgggct 8581 taccatggaa gctatgaggc ccccacacaa gggtcagcgt cctctctaat aaacggggtt 8641 gtcaggctcc tgtcaaaacc ctgggatgtg gtgactggag tcacaggaat agccatgacc 8701 gacaccacac cgtatggtca gcaaagagtt ttcaaggaaa aagtggacac tagggtgcca 8761 gacccccaag aaggtactcg tcaggttatg agcatggtct cttcctggtt gtggaaagag 8821 ctaggcaaac acaaacggcc acgagtctgt accaaagaag agttcatcaa caaggttcgt 8881 agcaatgcag cattaggggc aatatttgaa gaggaaaaag agtggaagac tgcagtggaa 8941 gctgtgaacg atccaaggtt ctgggctcta gtggacaagg aaagagagca ccacctgaga 9001 ggagagtgcc agagttgtgt gtacaacatg atgggaaaaa gagaaaagaa acaaggggaa 9061 tttggaaagg ccaagggcag ccgcgccatc tggtatatgt ggctaggggc tagatttcta 9121 gagttcgaag cccttggatt cttgaacgag gatcactgga tggggagaga gaactcagga 9181 ggtggtgttg aagggctggg attacaaaga ctcggatatg tcctagaaga gatgagtcgc 9241 ataccaggag gaaggatgta tgcagatgac actgctggct gggacacccg catcagcagg 9301 tttgatctgg agaatgaagc tctaatcacc aaccaaatgg agaaagggca cagggccttg 9361 gcattggcca taatcaagta cacataccaa aacaaagtgg taaaggtcct tagaccagct 9421 gaaaaaggga aaacagttat ggacattatt tcgagacaag accaaagggg gagcggacaa 9481 gttgtcactt acgctcttaa cacatttacc aacctagtgg tgcaactcat tcggaatatg 9541 gaggctgagg aagtcctaga gatgcaagac ttgtggctgc tgcggaggtc agagaaagtg 9601 accaactggt tgcagagcaa cggatgggat aggctcaaac gaatggcagt cagtggagat 9661 gattgcgttg tgaagccaat tgatgatagg tttgcacatg ccctcaggtt cttgaatgat 9721 atgggaaaag ttaggaagga cacacaagag tggaaaccct caactggatg ggacaactgg 9781 gaagaagttc cgttttgctc ccaccacttc aacaagctcc atctcaagga cgggaggtcc 9841 attgtggttc cctgccgcca ccaagatgaa ctgattggcc gggcccgcgt ctctccaggg 9901 gcgggatgga gcatccggga gactgcttgc ctagcaaaat catatgcgca aatgtggcag 9961 ctcctttatt tccacagaag ggacctccga ctgatggcca atgccatttg ttcatctgtg 10021 ccagttgact gggttccaac tgggagaact acctggtcaa tccatggaaa gggagaatgg 10081 atgaccactg aagacatgct tgtggtgtgg aacagagtgt ggattgagga gaacgaccac 10141 atggaagaca agaccccagt tacgaaatgg acagacattc cctatttggg aaaaagggaa 10201 gacttgtggt gtggatctct catagggcac agaccgcgca ccacctgggc tgagaacatt 10261 aaaaacacag tcaacatggt gcgcaggatc ataggtgatg aagaaaagta catggactac 10321 ctatccaccc aagttcgcta cttgggtgaa gaagggtcta cacctggagt gctgtaagca 10381 ccaatcttaa tgttgtcagg cctgctagtc agccacagct tggggaaagc tgtgcagcct 10441 gtgacccccc caggagaagc tgggaaacca agcctatagt caggccgaga acgccatggc 10501 acggaagaag ccatgctgcc tgtgagcccc tcagaggaca ctgagtcaaa aaaccccacg 10561 cgcttggagg cgcaggatgg gaaaagaagg tggcgacctt ccccaccctt caatctgggg 10621 cctgaactgg agatcagctg tggatctcca gaagagggac tagtggttag aggaga

University of Sao Paulo has released a full 2015 Zika sequence from Brazil.

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687191A/chicken/Scotland/532/2016 (A/H5N1) segment 8 (NS)1544.90.000000e+00838/838 (100%)EPI623942A/chicken/England/26352/2015 (A/H7N7) segment 8 (NS)1484.00.000000e+00826/838 (98%)EPI514602A/mallard/Sweden/50108/2006 (A/H4N6) segment 8 (NS)1478.40.000000e+00825/838 (98%)EPI372498A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 8 (NS)1478.40.000000e+00825/838 (98%)EPI367577A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 8 (NS)1478.40.000000e+00825/838 (98%)EPI514948A/mallard/Sweden/52405/2006 (A/H0) segment 8 (NS)1467.40.000000e+00824/839 (98%)EPI475943A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 8 (NS)1467.40.000000e+00823/838 (98%)EPI513751A/mallard/Sweden/79978/2008 (A/H4N6) segment 8 (NS)1461.80.000000e+00823/839 (98%)EPI485625A/Eurasian wigeon/Netherlands/4/2000 (A/H6N2) segment 8 (NS)1456.30.000000e+00822/839 (97%)EPI624440A/chicken/Italy/473/1999 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI618642A/mallard/Sweden/366/2002 (A/H11N9) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI499903A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI485622A/mallard/Sweden/16/2002 (A/H12N9) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI464812A/turkey/Italy/472/1999 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI284361A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI238668A/turkey/Italy/977/1999 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI89829A/turkey/Italy/3620/1999 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI69224A/turkey/Italy/1265/99 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI68189A/turkey/Italy/977/99 (A/H7N1) segment 8 (NS)1450.70.000000e+00821/839 (97%)EPI505522A/chicken/Italy/1081/1999 (A/H7N1) segment 8 (NS)1447.00.000000e+00820/839 (97%)EPI525965A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI505571A/turkey/Italy/1555/1999 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI505542A/turkey/Italy/1085/1999 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI505529A/turkey/Italy/1083/1999 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI387548A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI327348A/turkey/Italy/1067/1999 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI309095A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 8 (NS)1445.20.000000e+00817/834 (97%)EPI306425A/shoveler/Koymor/118/2009 (A/H3) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI238411A/chicken/Italy/1067/1999 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI89841A/turkey/Italy/4169/99 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI63324A/chicken/Italy/1082/1999 (A/H7N1) segment 8 (NS)1445.20.000000e+00820/839 (97%)EPI505579A/turkey/Italy/2716/1999 (A/H7N1) segment 8 (NS)1441.50.000000e+00819/839 (97%)EPI617999A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI514670A/mallard/Sweden/7582/2003 (A/H4N6) segment 8 (NS)1439.70.000000e+00818/838 (97%)EPI438359A/chicken/Italy/1279/1999 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI377890A/mallard/Sweden/72/2005 (A/H2N9) segment 8 (NS)1439.70.000000e+00818/838 (97%)EPI372514A/garganey/Ukraine/05839-NAMRU3/2006 (A/H14N6) segment 8 (NS)1439.70.000000e+00818/838 (97%)EPI327341A/chicken/Italy/1391/1999 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI251609A/common teal/Netherlands/9/2000 (A/H11N9) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI244104A/goose/Germany/R3160/09 (A/H5N2) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI238621A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI238300A/turkey/Italy/2379/2000 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI235568A/Anas angustirostris/Astrakhan/3088/2002 (A/H4N8) segment 8 (NS)1439.70.000000e+00820/840 (97%)EPI69205A/turkey/Italy/2732/1999 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI69186A/turkey/Italy/2715/99 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI69148A/turkey/Italy/3489/99 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI68512A/turkey/Italy/3488/1999 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI68493A/turkey/Italy/3185/99 (A/H7N1) segment 8 (NS)1439.70.000000e+00819/839 (97%)EPI505543A/turkey/Italy/1086/1999 (A/H7N1) segment 8 (NS)1436.00.000000e+00818/839 (97%)EPI619108A/mallard/Sweden/99377/2009 (A/H8N4) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI619006A/mallard/Sweden/770/2002 (A/H10N6) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI618993A/mallard/Sweden/768/2002 (A/H10N6) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI618977A/mallard/Sweden/766/2002 (A/H0) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI618491A/mallard/Sweden/101589/2009 (A/H11N9) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI525913A/ruddy shelduck/Mongolia/590C2/2009 (A/H11N2) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI514687A/mallard/Sweden/5724/2005 (A/H4N2) segment 8 (NS)1434.10.000000e+00817/838 (97%)EPI507722A/turkey/Italy/4749/1999 (A/H7N1) segment 8 (NS)1434.10.000000e+00817/838 (97%)EPI485680A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI485537A/mallard/Sweden/43/2002 (A/H10N5) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI433416A/mallard/Czech Republic/15962-4T/2010 (A/H6N9) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI433409A/mallard/Czech Republic/15902-25K/2009 (A/H11N9) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI433390A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI367601A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI314712A/mallard/Czech Republic/15902-18K/2009 (A/H11N9) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI309096A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 8 (NS)1434.10.000000e+00819/840 (97%)EPI309094A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 8 (NS)1434.10.000000e+00815/834 (97%)EPI251709A/mallard/Sweden/41/2002 (A/H10N6) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI238637A/turkey/Italy/3675/1999 (A/H7N1) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI238629A/turkey/Italy/3283/1999 (A/H7N1) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI236182A/mallard/Sweden/21/2002 (A/H5N2) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI182077A/common teal/Netherlands/2/2005 (A/H6N8) segment 8 (NS)1434.10.000000e+00817/838 (97%)EPI69129A/turkey/Italy/4301/1999 (A/H7N1) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI68474A/turkey/Italy/4295/1999 (A/H7N1) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI63305A/quail/Italy/396/2000 (A/H7N1) segment 8 (NS)1434.10.000000e+00817/838 (97%)EPI63267A/chicken/Italy/4746/1999 (A/H7N1) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI60414A/turkey/Italy/3675/99 (A/H7N1) segment 8 (NS)1434.10.000000e+00818/839 (97%)EPI619115A/mallard/Sweden/101165/2009 (A/H8N4) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI618604A/mallard/Sweden/50968/2006 (A/H12N5) segment 8 (NS)1428.60.000000e+00818/840 (97%)EPI514864A/mallard/Sweden/906/2002 (A/H4N2) segment 8 (NS)1428.60.000000e+00818/840 (97%)EPI507730A/turkey/Italy/4756/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI507714A/turkey/Italy/4827/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI507698A/turkey/Italy/4618/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI485840A/mallard/Netherlands/1/2001 (A/H6N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI364119A/duck/Fujian/3264/2007 (A/H6N6) segment 8 (NS)1428.60.000000e+00818/840 (97%)EPI238660A/turkey/Italy/4580/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI69110A/turkey/Italy/4617/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI69072A/chicken/Italy/4789/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI69053A/quail/Italy/4992/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI68436A/turkey/Italy/4708/1999 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI68227A/turkey/Italy/1084/2000 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI60756A/duck/Italy/551/2000 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI60395A/turkey/Italy/4580/99 (A/H7N1) segment 8 (NS)1428.60.000000e+00817/839 (97%)EPI505690A/chicken/Italy/161/2000 (A/H7N1) segment 8 (NS)1424.90.000000e+00815/838 (97%)EPI505631A/turkey/Italy/5005/1999 (A/H7N1) segment 8 (NS)1424.90.000000e+00812/833 (97%)EPI118226A/mallard/Italy/36/2002 (A/H5N3) segment 8 (NS)1424.90.000000e+00811/831 (97%)EPI618655A/mallard/Sweden/418/2002 (A/H11N9) segment 8 (NS)1423.00.000000e+00816/839 (97%)EPI514847A/mallard/Sweden/1883/2003 (A/H4N3) segment 8 (NS)1423.00.000000e+00816/839 (97%)EPI514677A/mallard/Sweden/7925/2005 (A/H4N6) segment 8 (NS)1423.00.000000e+00816/839 (97%)EPI507706A/turkey/Italy/4828/1999 (A/H7N1) segment 8 (NS)1423.00.000000e+00816/839 (97%)EPI505919A/chicken/Italy/2021/2000 (A/H7N1) segment 8 (NS)1423.00.000000e+00816/839 (97%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687188A/chicken/Scotland/532/2016 (A/H5N1) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI617869A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI493029A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI683033A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI683032A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI438282A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP)2599.40.000000e+001467/1497 (97%)EPI618038A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP)2593.80.000000e+001467/1498 (97%)EPI618025A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP)2593.80.000000e+001467/1498 (97%)EPI601644A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI601635A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI461630A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP)2593.80.000000e+001466/1497 (97%)EPI446508A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP)2590.10.000000e+001465/1497 (97%)EPI601705A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP)2588.30.000000e+001465/1497 (97%)EPI617996A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP)2582.70.000000e+001464/1497 (97%)EPI617758A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 5 (NP)2582.70.000000e+001464/1497 (97%)EPI470398A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP)2582.70.000000e+001464/1497 (97%)EPI407865A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP)2579.00.000000e+001463/1497 (97%)EPI617968A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP)2577.20.000000e+001463/1497 (97%)EPI601836A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP)2577.20.000000e+001464/1498 (97%)EPI596635A/duck/Quang Ninh/14/2013 (A/H3N6) segment 5 (NP)2577.20.000000e+001463/1497 (97%)EPI591918A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP)2577.20.000000e+001463/1497 (97%)EPI683042A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP)2571.70.000000e+001462/1497 (97%)EPI599810A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP)2571.70.000000e+001463/1498 (97%)EPI591924A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 5 (NP)2571.70.000000e+001462/1497 (97%)EPI591912A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 5 (NP)2571.70.000000e+001462/1497 (97%)EPI590035A/duck/Quang Ninh/220/2014 (A/H3N2) segment 5 (NP)2571.70.000000e+001462/1497 (97%)EPI683035A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP)2566.10.000000e+001461/1497 (97%)EPI617770A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 5 (NP)2566.10.000000e+001461/1497 (97%)EPI596424A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP)2566.10.000000e+001461/1497 (97%)EPI583947A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 5 (NP)2566.10.000000e+001461/1497 (97%)EPI470377A/wild duck/Jiangxi/19831/2009 (A/H7N7) segment 5 (NP)2566.10.000000e+001461/1497 (97%)EPI683037A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI683036A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI600185A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI600179A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI600173A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI600167A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI600159A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI590230A/duck/Hokkaido/W280/2014 (A/H5N3) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI590216A/duck/Hokkaido/W240/2014 (A/H5N3) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI470437A/common teal/Hong Kong/MPM1670/2011 (A/H7N7) segment 5 (NP)2560.60.000000e+001461/1498 (97%)EPI392508A/pintail/Korea/1173/09 (A/H7N7) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI315101A/mallard/PT/27972-B139/2007 (A/H9N2) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI270063A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 5 (NP)2560.60.000000e+001460/1497 (97%)EPI618599A/mallard/Sweden/107688/2009 (A/H10N1) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI602410A/duck/Jiangxi/33763/2013 (A/H10N3) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI602350A/duck/Jiangxi/33777/2013 (A/H10N3) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470443A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470442A/wild waterfowl/Hong Kong/MPL1006/2011 (A/H7N7) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470441A/wild waterfowl/Hong Kong/MPM2121/2011 (A/H7N7) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470440A/wild waterfowl/Hong Kong/MPL705/2011 (A/H7N7) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470438A/common teal/Hong Kong/MPL634/2011 (A/H7N7) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470436A/common teal/Hong Kong/MPM1645/2011 (A/H7N1) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI470411A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 5 (NP)2555.00.000000e+001459/1497 (97%)EPI363536A/duck/Guizhou/2773/2006 (A/H6N2) segment 5 (NP)2555.00.000000e+001460/1498 (97%)EPI602448A/duck/Jiangxi/33665/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602441A/duck/Jiangxi/33663/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602403A/duck/Jiangxi/33759/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602396A/duck/Jiangxi/33757/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602389A/duck/Jiangxi/33753/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602382A/duck/Jiangxi/33713/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602375A/duck/Jiangxi/33699/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602368A/duck/Jiangxi/33695/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602343A/duck/Jiangxi/33775/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602336A/duck/Jiangxi/33769/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602329A/duck/Jiangxi/33765/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599873A/duck/Jiangxi/33778/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599866A/duck/Jiangxi/33747/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599859A/duck/Jiangxi/33744/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599852A/duck/Jiangxi/33701/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599845A/duck/Jiangxi/33653/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599838A/duck/Jiangxi/33641/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI599831A/duck/Jiangxi/33629/2013 (A/H10N3) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI510826A/duck/Taiwan/11254/2013 (A/H5N2) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI510819A/duck/Taiwan/11213/2013 (A/H5N2) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI470439A/common teal/Hong Kong/MPM1740/2011 (A/H7N7) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI470415A/duck/Yunnan/87/2007 (A/H7N6) segment 5 (NP)2549.50.000000e+001458/1497 (97%)EPI602434A/duck/Jiangxi/33651/2013 (A/H10N3) segment 5 (NP)2547.70.000000e+001457/1497 (97%)EPI602427A/duck/Jiangxi/33637/2013 (A/H10N3) segment 5 (NP)2544.00.000000e+001457/1497 (97%)EPI588953A/goose/Taiwan/a015/2015 (A/H5N8) segment 5 (NP)2544.00.000000e+001457/1497 (97%)EPI584059A/environment/Kagoshima/KU-ngr-F/2012(H4N8) (A/H4N8) segment 5 (NP)2544.00.000000e+001457/1497 (97%)EPI470431A/wild waterfowl/Hong Kong/MPL696/2011 (A/H2N9) segment 5 (NP)2544.00.000000e+001457/1497 (97%)EPI470378A/duck/Jiangxi/21669/2009 (A/H7N7) segment 5 (NP)2544.00.000000e+001457/1497 (97%)EPI601684A/duck/Jiangxi/3961/2013 (A/H0) segment 5 (NP)2542.10.000000e+001442/1475 (97%)EPI316769A/mallard/Czech Republic/13579-84K/2010 (A/H4N6) segment 5 (NP)2540.30.000000e+001456/1497 (97%)EPI599880A/duck/Jiangxi/33779/2013 (A/H10N3) segment 5 (NP)2538.40.000000e+001456/1497 (97%)EPI584047A/environment/Kagoshima/KU-ngr-C/2012(H3N8) (A/H3N8) segment 5 (NP)2538.40.000000e+001456/1497 (97%)EPI470380A/duck/Jiangxi/23008/2009 (A/H7N7) segment 5 (NP)2538.40.000000e+001456/1497 (97%)EPI268706A/mallard/Jiangxi/7376/2003 (A/H6N2) segment 5 (NP)2538.40.000000e+001457/1498 (97%)EPI222088A/garganey/Altai/1213/2007 (A/H5N2) segment 5 (NP)2538.40.000000e+001457/1498 (97%)EPI222048A/gadwall/Altai/1202/2007 (A/H5N2) segment 5 (NP)2538.40.000000e+001457/1498 (97%)EPI600153A/migratory duck/Jiangxi/31577/2013 (A/H10N5) segment 5 (NP)2532.90.000000e+001455/1497 (97%)EPI617983A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 5 (NP)2527.30.000000e+001454/1497 (97%)EPI506050A/duck/Moscow/4182/2010 (A/H5N3) segment 5 (NP)2527.30.000000e+001454/1497 (97%)EPI372497A/mallard/Ukraine/05842-NAMRU3/2006 (A/H3N8) segment 5 (NP)2527.30.000000e+001455/1498 (97%)EPI168528A/mute swan/Aktau/1460/2006 (A/H5N1) segment 5 (NP)2527.30.000000e+001430/1461 (97%)EPI316865A/mallard/Czech Republic/14924-1/2007 (A/H6N5) segment 5 (NP)2523.60.000000e+001453/1497 (97%)EPI387852A/wild bird/Korea/A02/2011 (A/H10N4) segment 5 (NP)2521.80.000000e+001454/1498 (97%)EPI441047A/duck/Vietnam/LBM185/2012 (A/H6N6) segment 5 (NP)2516.30.000000e+001452/1497 (96%)EPI387853A/wild bird/Korea/A01/2011 (A/H10N4) segment 5 (NP)2516.30.000000e+001453/1498 (96%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687186A/chicken/Scotland/532/2016 (A/H5N1) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI614284A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA)3724.00.000000e+002106/2151 (97%)EPI377637A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA)3724.00.000000e+002106/2151 (97%)EPI363454A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA)3718.40.000000e+002105/2151 (97%)EPI363462A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA)3712.90.000000e+002104/2151 (97%)EPI296255A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA)3712.90.000000e+002104/2151 (97%)EPI345928A/whistling swan/Shimane/580/2002 (A/H5N3) segment 3 (PA)3707.30.000000e+002104/2152 (97%)EPI296257A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA)3707.30.000000e+002103/2151 (97%)EPI268817A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA)3707.30.000000e+002103/2151 (97%)EPI118289A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA)3707.30.000000e+002103/2151 (97%)EPI614286A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA)3701.80.000000e+002102/2151 (97%)EPI493025A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA)3701.80.000000e+002102/2151 (97%)EPI363470A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA)3701.80.000000e+002102/2151 (97%)EPI262642A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA)3701.80.000000e+002103/2152 (97%)EPI140261A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA)3701.80.000000e+002102/2151 (97%)EPI118295A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA)3701.80.000000e+002102/2151 (97%)EPI614298A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA)3696.30.000000e+002102/2152 (97%)EPI387502A/canvasback/Mongolia/2-69/2007 (A/H10) segment 3 (PA)3696.30.000000e+002100/2149 (97%)EPI262643A/aquatic bird/Korea/w79/2005 (A/H5N2) segment 3 (PA)3696.30.000000e+002102/2152 (97%)EPI262641A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA)3696.30.000000e+002102/2152 (97%)EPI118337A/duck/Jiang Xi/3345/2005 (A/H5N2) segment 3 (PA)3696.30.000000e+002101/2151 (97%)EPI118321A/duck/Jiang Xi/1850/2005 (A/H5N2) segment 3 (PA)3696.30.000000e+002101/2151 (97%)EPI487590A/wild duck/Jiangxi/10179/2005 (A/H7N3) segment 3 (PA)3690.70.000000e+002100/2151 (97%)EPI387412A/ruddy shelduck/Mongolia/1-26/2007 (A/H3N8) segment 3 (PA)3690.70.000000e+002101/2152 (97%)EPI363534A/duck/Guizhou/2773/2006 (A/H6N2) segment 3 (PA)3690.70.000000e+002101/2152 (97%)EPI326817A/environment/Korea/CSM05/2004 (A/H3N1) segment 3 (PA)3690.70.000000e+002100/2151 (97%)EPI296253A/wild duck/Korea/CW09/2005 (A/H1N1) segment 3 (PA)3690.70.000000e+002100/2151 (97%)EPI268977A/mallard/Jiangxi/4408/2005 (A/H6N8) segment 3 (PA)3690.70.000000e+002100/2151 (97%)EPI268960A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 3 (PA)3690.70.000000e+002100/2151 (97%)EPI262644A/aquatic bird/Korea/w81/2005 (A/H5N2) segment 3 (PA)3690.70.000000e+002101/2152 (97%)EPI360053A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI307313A/aquatic bird/Korea/MA81/2007 (A/H5N2) segment 3 (PA)3685.20.000000e+002100/2152 (97%)EPI307311A/mallard duck/Korea/6L/2007 (A/H7N6) segment 3 (PA)3685.20.000000e+002100/2152 (97%)EPI262663A/aquatic bird/Korea/w222/2007 (A/H5N2) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI258967A/aquatic bird/Korea/w164/2007 (A/H5N2) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI258966A/aquatic bird/Korea/w163/2007 (A/H5N2) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI131894A/sharp-tailed sandpiper/Australia/10/2004 (A/H11N9) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI69246A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 3 (PA)3685.20.000000e+002099/2151 (97%)EPI335409A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 3 (PA)3679.60.000000e+002098/2151 (97%)EPI316751A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA)3679.60.000000e+002098/2151 (97%)EPI268979A/duck/Hunan/3748/2004 (A/H6N8) segment 3 (PA)3679.60.000000e+002098/2151 (97%)EPI614278A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI538470A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI538433A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI401299A/wild duck/Korea/CSM20-5/2009 (A/H4N6) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI363890A/duck/Guangxi/1330/2007 (A/H6N8) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI363882A/duck/Guangxi/890/2007 (A/H6N8) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI307308A/aquatic bird/Korea/w44/2005 (A/H7N3) segment 3 (PA)3674.10.000000e+002098/2152 (97%)EPI268961A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI262667A/aquatic bird/Korea/w234/2007 (A/H5N2) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI262666A/aquatic bird/Korea/w231/2007 (A/H5N2) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI258965A/aquatic bird/Korea/w161/2007 (A/H5N2) segment 3 (PA)3674.10.000000e+002097/2151 (97%)EPI244497A/mallard/Korea/GH170/2007 (A/H7N7) segment 3 (PA)3674.10.000000e+002098/2152 (97%)EPI387406A/whooper swan/Mongolia/1-25/2007 (A/H3N8) segment 3 (PA)3672.30.000000e+002095/2148 (97%)EPI599169A/migratory duck/Jiangxi/593/2005 (A/H10N8) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI568314A/duck/Jiangxi/501/2006 (A/H10N3) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI568311A/duck/Jiangxi/468/2006 (A/H10N3) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI568308A/duck/Jiangxi/422/2006 (A/H10N3) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI568305A/duck/Jiangxi/386/2006 (A/H10N3) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI568267A/duck/Jiangxi/302/2006 (A/H10N3) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI568264A/duck/Jiangxi/13946/2005 (A/H10N3) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI307312A/aquatic bird/Korea/MA44/2007 (A/H7N3) segment 3 (PA)3668.60.000000e+002097/2152 (97%)EPI268981A/duck/Hunan/1469/2002 (A/H6N8) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI268962A/duck/Guangxi/1455/2004 (A/H6N5) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI262658A/aquatic bird/Korea/w211/2007 (A/H5N2) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI262657A/aquatic bird/Korea/w208/2007 (A/H5N2) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI182382A/Baikal Teal/Hongze/14/2005 (A/H11N9) segment 3 (PA)3668.60.000000e+002096/2151 (97%)EPI614294A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI599172A/migratory duck/Jiangxi/21248/2009 (A/H10N8) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI599168A/duck/Jiangxi/2039/2005 (A/H10N8) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI599153A/duck/Jiangxi/13875/2005 (A/H10N3) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI568317A/duck/Jiangxi/860/2006 (A/H10N3) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI401283A/duck/Korea/DY97/2007 (A/H4N3) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI275178A/thick-billed murre/Alaska/44145-199/2006 (A/H2N6) segment 3 (PA)3663.00.000000e+002096/2152 (97%)EPI268978A/mallard/Jiangxi/6285/2004 (A/H6N8) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI262660A/aquatic bird/Korea/w217/2007 (A/H5N2) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI262656A/aquatic bird/Korea/w206/2007 (A/H5N2) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI244544A/mallard/Korea/GH171/2007 (A/H7N7) segment 3 (PA)3663.00.000000e+002096/2152 (97%)EPI244507A/magpie/Korea/YJD174/2007 (A/H7N7) segment 3 (PA)3663.00.000000e+002096/2152 (97%)EPI3391A/duck/Hokkaido/84/2002 (A/H5N3) segment 3 (PA)3663.00.000000e+002095/2151 (97%)EPI262654A/aquatic bird/Korea/w204/2007 (A/H5N2) segment 3 (PA)3659.30.000000e+002095/2152 (97%)EPI599149A/migratory duck/Jiangxi/9334/2005 (A/H10N6) segment 3 (PA)3657.50.000000e+002094/2151 (97%)EPI584261A/duck/Hunan/S3137/2009 (A/H10N8) segment 3 (PA)3657.50.000000e+002094/2151 (97%)EPI538411A/common teal/Mongolia/2273/2011 (A/H6N6) segment 3 (PA)3657.50.000000e+002088/2142 (97%)EPI363898A/duck/Guangxi/1533/2007 (A/H6N2) segment 3 (PA)3657.50.000000e+002095/2152 (97%)EPI363694A/duck/Taiwan/DV30-2/2005 (A/H5N2) segment 3 (PA)3657.50.000000e+002094/2151 (97%)EPI363486A/duck/Guangxi/2736/2006 (A/H6N8) segment 3 (PA)3657.50.000000e+002096/2153 (97%)EPI361728A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 3 (PA)3657.50.000000e+002092/2148 (97%)EPI296248A/wild duck/Korea/ESD48/2006 (A/H1N1) segment 3 (PA)3657.50.000000e+002095/2152 (97%)EPI599133A/duck/Jiangxi/24570/2009 (A/H0) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI598308A/migratory duck/Jiangxi/9492/2005 (A/H10N6) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI533885A/duck/Guangxi/125D17/2012 (A/H4N2) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI461828A/duck/Hunan/S4474/2011 (A/H11N9) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI461824A/duck/Hunan/S4137/2011 (A/H11N9) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI461686A/duck/Hunan/S4013/2011 (A/H11N9) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI439067A/domestic green-winged teal/Hunan/3450/2006 (A/H5N1) segment 3 (PA)3651.90.000000e+002095/2153 (97%)EPI268958A/duck/Hunan/748/2005 (A/H6N5) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI182387A/spotbill duck/Xuyi/6/2005 (A/H11N2) segment 3 (PA)3651.90.000000e+002093/2151 (97%)EPI599150A/migratory duck/Jiangxi/10974/2005 (A/H10N6) segment 3 (PA)3646.40.000000e+002092/2151 (97%)EPI598310A/migratory duck/Jiangxi/7231/2003 (A/H10N5) segment 3 (PA)3646.40.000000e+002092/2151 (97%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687185A/chicken/Scotland/532/2016 (A/H5N1) segment 2 (PB1)4085.90.000000e+002212/2212 (100%)EPI618617A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1)3880.90.000000e+002173/2209 (98%)EPI629347A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 2 (PB1)3836.60.000000e+002165/2209 (98%)EPI629339A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 2 (PB1)3836.60.000000e+002165/2209 (98%)EPI623944A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1)3836.60.000000e+002165/2209 (98%)EPI618043A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1)3820.00.000000e+002162/2209 (97%)EPI617899A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1)3814.50.000000e+002161/2209 (97%)EPI617760A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1)3792.30.000000e+002157/2209 (97%)EPI514974A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1)3792.30.000000e+002157/2209 (97%)EPI617988A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1)3786.80.000000e+002156/2209 (97%)EPI464920A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1)3779.40.000000e+002153/2206 (97%)EPI560057A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1)3770.10.000000e+002153/2209 (97%)EPI617954A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1)3742.40.000000e+002148/2209 (97%)EPI372361A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1)3742.40.000000e+002148/2209 (97%)EPI182047A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1)3740.60.000000e+002149/2211 (97%)EPI617793A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1)3720.30.000000e+002144/2209 (97%)EPI617820A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1)3698.10.000000e+002140/2209 (96%)EPI464928A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1)3692.60.000000e+002140/2210 (96%)EPI345434A/Larus argentatus/Belgium/02936cls9/2010 (A/H5N2) segment 2 (PB1)3653.80.000000e+002128/2203 (96%)EPI211183A/mallard/Poland/16/09 (A/H7N7) segment 2 (PB1)3653.80.000000e+002132/2209 (96%)EPI618651A/mallard/Sweden/69794/2007 (A/H12N5) segment 2 (PB1)3648.30.000000e+002131/2209 (96%)EPI618636A/mallard/Sweden/68529/2007 (A/H12N5) segment 2 (PB1)3648.30.000000e+002131/2209 (96%)EPI618622A/mallard/Sweden/60069/2007 (A/H12N5) segment 2 (PB1)3648.30.000000e+002131/2209 (96%)EPI618407A/mallard/Sweden/101589/2009 (A/H11N9) segment 2 (PB1)3642.70.000000e+002130/2209 (96%)EPI464944A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1)3642.70.000000e+002131/2210 (96%)EPI464936A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1)3642.70.000000e+002131/2210 (96%)EPI618605A/mallard/Sweden/107688/2009 (A/H10N1) segment 2 (PB1)3637.20.000000e+002130/2210 (96%)EPI464952A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1)3637.20.000000e+002130/2210 (96%)EPI618937A/mallard/Sweden/101165/2009 (A/H8N4) segment 2 (PB1)3631.60.000000e+002129/2210 (96%)EPI618014A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 2 (PB1)3626.10.000000e+002128/2210 (96%)EPI387542A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 2 (PB1)3626.10.000000e+002128/2210 (96%)EPI378008A/mallard/Netherlands/29/2010 (A/H2N3) segment 2 (PB1)3620.60.000000e+002129/2212 (96%)EPI457917A/duck/Guangxi/GXd-4/2011 (A/H1N2) segment 2 (PB1)3615.00.000000e+002125/2209 (96%)EPI618448A/mallard/Sweden/101993/2009 (A/H2N9) segment 2 (PB1)3609.50.000000e+002126/2211 (96%)EPI475930A/mallard/Iceland/1007/2011 (A/H3N6) segment 2 (PB1)3609.50.000000e+002125/2210 (96%)EPI367587A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 2 (PB1)3603.90.000000e+002123/2209 (96%)EPI475944A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 2 (PB1)3592.90.000000e+002123/2211 (96%)EPI457909A/duck/Guangxi/GXd-1/2011 (A/H1N2) segment 2 (PB1)3592.90.000000e+002121/2209 (96%)EPI336987A/duck/Zhejiang/2245/2011 (A/H5N1) segment 2 (PB1)3592.90.000000e+002121/2209 (96%)EPI527622A/mallard/Mongolia/1581/2010 (A/H3N8) segment 2 (PB1)3587.30.000000e+002120/2209 (95%)EPI527631A/mallard /Mongolia/1551/2010 (A/H3N1) segment 2 (PB1)3581.80.000000e+002120/2210 (95%)EPI439584A/avian/Israel/289/2001 (A/H6N2) segment 2 (PB1)3581.80.000000e+002119/2209 (95%)EPI433380A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 2 (PB1)3581.80.000000e+002120/2210 (95%)EPI367595A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 2 (PB1)3581.80.000000e+002120/2210 (95%)EPI284355A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 2 (PB1)3581.80.000000e+002120/2210 (95%)EPI618214A/mallard/Sweden/1689/2002 (A/H7N7) segment 2 (PB1)3572.50.000000e+002117/2208 (95%)EPI618201A/mallard/Sweden/1645/2002 (A/H7N7) segment 2 (PB1)3572.50.000000e+002117/2208 (95%)EPI618139A/mallard/Sweden/1690/2002 (A/H7N7) segment 2 (PB1)3572.50.000000e+002117/2208 (95%)EPI617059A/mallard/Sweden/1671/2002 (A/H7N7) segment 2 (PB1)3572.50.000000e+002117/2208 (95%)EPI335410A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 2 (PB1)3570.70.000000e+002118/2210 (95%)EPI439586A/avian/Israel/320/2001 (A/H6N2) segment 2 (PB1)3567.00.000000e+002116/2209 (95%)EPI618913A/mallard/Sweden/51726/2006 (A/H10N4) segment 2 (PB1)3565.20.000000e+002117/2210 (95%)EPI618885A/mallard/Sweden/51619/2006 (A/H10N4) segment 2 (PB1)3565.20.000000e+002117/2210 (95%)EPI485721A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1)3559.60.000000e+002115/2209 (95%)EPI236192A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1)3559.60.000000e+002115/2209 (95%)EPI173879A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1)3559.60.000000e+002116/2210 (95%)EPI167837A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1)3559.60.000000e+002116/2210 (95%)EPI618135A/mallard/Sweden/6039/2005 (A/H10N4) segment 2 (PB1)3554.10.000000e+002116/2211 (95%)EPI439580A/avian/Israel/824/2005 (A/H10N2) segment 2 (PB1)3554.10.000000e+002114/2209 (95%)EPI229961A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1)3554.10.000000e+002116/2211 (95%)EPI169291A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1)3554.10.000000e+002116/2211 (95%)EPI618848A/mallard/Sweden/8023/2005 (A/H10N4) segment 2 (PB1)3548.50.000000e+002116/2212 (95%)EPI514709A/mallard/Sweden/5755/2005 (A/H4N6) segment 2 (PB1)3548.50.000000e+002115/2211 (95%)EPI514334A/mallard/Sweden/52249/2006 (A/H4N6) segment 2 (PB1)3548.50.000000e+002115/2211 (95%)EPI514276A/mallard/Sweden/52334/2006 (A/H4N6) segment 2 (PB1)3548.50.000000e+002115/2211 (95%)EPI514050A/mallard/Sweden/68504/2007 (A/H4N2) segment 2 (PB1)3548.50.000000e+002114/2210 (95%)EPI372273A/teal/Egypt/20431-NAMRU3/2003 (A/H1N2) segment 2 (PB1)3548.50.000000e+002115/2211 (95%)EPI514671A/mallard/Sweden/7582/2003 (A/H4N6) segment 2 (PB1)3544.80.000000e+002114/2210 (95%)EPI618644A/mallard/Sweden/366/2002 (A/H11N9) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI514716A/mallard/Sweden/5763/2005 (A/H4N6) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI514681A/mallard/Sweden/5714/2005 (A/H4N6) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI514650A/mallard/Sweden/5814/2005 (A/H4N6) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI514643A/mallard/Sweden/5811/2005 (A/H4N6) segment 2 (PB1)3543.00.000000e+002114/2211 (95%)EPI514636A/mallard/Sweden/5803/2005 (A/H4N6) segment 2 (PB1)3543.00.000000e+002114/2211 (95%)EPI514012A/mallard/Sweden/68551/2007 (A/H4N2) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI513968A/mallard/Sweden/68677/2007 (A/H0) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI513588A/mallard/Sweden/80415/2008 (A/H0) segment 2 (PB1)3543.00.000000e+002114/2211 (95%)EPI485608A/mallard/Sweden/16/2002 (A/H12N9) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI377795A/mallard/Sweden/57/2002 (A/H2N3) segment 2 (PB1)3543.00.000000e+002114/2211 (95%)EPI372472A/teal/Ukraine/12177-NAMRU3/2005 (A/H7N9) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI372384A/teal/Egypt/13203-NAMRU3/2006 (A/H6N2) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI336010A/teal/Chany/444/2009 (A/H8N8) segment 2 (PB1)3543.00.000000e+002113/2210 (95%)EPI285821A/avian/Egypt/920431/2006 (A/H9N2) segment 2 (PB1)3543.00.000000e+002112/2208 (95%)EPI618966A/mallard/Sweden/1417/2002 (A/H10N7) segment 2 (PB1)3539.30.000000e+002112/2209 (95%)EPI618541A/mallard/Sweden/50980/2006 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618496A/mallard/Sweden/2321/2004 (A/H0) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618486A/mallard/Sweden/100832/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618472A/mallard/Sweden/101120/2009 (A/H2N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618465A/mallard/Sweden/101082/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618360A/mallard/Sweden/100760/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618352A/mallard/Sweden/100687/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618344A/mallard/Sweden/100879/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618340A/mallard/Sweden/100740/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618327A/mallard/Sweden/100791/2009 (A/H11N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI618068A/mallard/Sweden/8004/2005 (A/H10N4) segment 2 (PB1)3537.50.000000e+002113/2211 (95%)EPI617025A/mallard/Sweden/80329/2008 (A/H11N5) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI514743A/mallard/Sweden/4508/2004 (A/H4N6) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI514003A/mallard/Sweden/68940/2007 (A/H4N2) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI513482A/mallard/Sweden/101294/2009 (A/H4N9) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)EPI377678A/mallard/Sweden/99/2002 (A/H2N3) segment 2 (PB1)3537.50.000000e+002112/2210 (95%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687184A/chicken/Scotland/532/2016 (A/H5N1) segment 1 (PB2)4189.30.000000e+002270/2270 (100%)EPI560338A/Italy/3/2013 (A/H7N7) segment 1 (PB2)3995.40.000000e+002234/2270 (98%)EPI618045A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 1 (PB2)3940.00.000000e+002224/2270 (97%)EPI617974A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 1 (PB2)3923.40.000000e+002222/2271 (97%)EPI341793A/mallard/France/090360/2009 (A/H9N2) segment 1 (PB2)3912.30.000000e+002219/2270 (97%)EPI617882A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 1 (PB2)3906.80.000000e+002218/2270 (97%)EPI484292A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 1 (PB2)3868.00.000000e+002167/2204 (98%)EPI174669A/chicken/Hubei/3002/2007 (A/H5N1) segment 1 (PB2)3862.50.000000e+002210/2270 (97%)EPI174667A/chicken/Hubei/2856/2007 (A/H5N1) segment 1 (PB2)3862.50.000000e+002210/2270 (97%)EPI174670A/chicken/Hunan/3157/2006 (A/H5N1) segment 1 (PB2)3856.90.000000e+002209/2270 (97%)EPI174657A/duck/Hunan/689/2006 (A/H5N1) segment 1 (PB2)3856.90.000000e+002210/2271 (97%)EPI221999A/environment/Hunan/1-8/2007 (A/H5N1) segment 1 (PB2)3851.40.000000e+002209/2271 (97%)EPI174668A/duck/Hubei/2911/2007 (A/H5N1) segment 1 (PB2)3851.40.000000e+002208/2270 (97%)EPI174665A/duck/Hunan/1964/2007 (A/H5N1) segment 1 (PB2)3851.40.000000e+002208/2270 (97%)EPI222147A/lesser kestrel/Heilongjiang/194/2007 (A/H5N1) segment 1 (PB2)3845.80.000000e+002207/2270 (97%)EPI174660A/duck/Henan/1647/2006 (A/H5N1) segment 1 (PB2)3840.30.000000e+002206/2270 (97%)EPI262682A/aquatic bird/Korea/w120/2006 (A/H5N2) segment 1 (PB2)3834.80.000000e+002205/2270 (97%)EPI262680A/aquatic bird/Korea/w113/2006 (A/H5N2) segment 1 (PB2)3834.80.000000e+002205/2270 (97%)EPI222581A/scaly-breasted munia/Hong Kong/45/2007 (A/H5N1) segment 1 (PB2)3831.10.000000e+002201/2265 (97%)EPI262683A/aquatic bird/Korea/w121/2006 (A/H5N2) segment 1 (PB2)3829.20.000000e+002204/2270 (97%)EPI174662A/duck/Henan/1652/2006 (A/H5N1) segment 1 (PB2)3829.20.000000e+002204/2270 (97%)EPI173585A/swine/Korea/C12/2008 (A/H5N2) segment 1 (PB2)3829.20.000000e+002204/2270 (97%)EPI262681A/aquatic bird/Korea/w114/2006 (A/H5N2) segment 1 (PB2)3823.70.000000e+002203/2270 (97%)EPI167950A/long-tailed shrike/Hong Kong/2762/2007 (A/H5N1) segment 1 (PB2)3821.80.000000e+002194/2257 (97%)EPI220527A/environment/Hunan/6-69/2008 (A/H5N1) segment 1 (PB2)3818.10.000000e+002203/2271 (97%)EPI167855A/crested goshawk/Hong Kong/458/2007 (A/H5N1) segment 1 (PB2)3760.90.000000e+002160/2222 (97%)EPI316548A/spot-billed duck/Korea/KNU SYG06/2006 (A/H5N3) segment 1 (PB2)3729.50.000000e+002186/2270 (96%)EPI401812A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 1 (PB2)3724.00.000000e+002185/2270 (96%)EPI534805A/duck/Zhejiang/D18/2013 (A/H3N3) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI534804A/duck/Zhejiang/D17/2013 (A/H3N3) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI534803A/duck/Zhejiang/D16/2013 (A/H3N3) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI534800A/duck/Zhejiang/D13/2013 (A/H3N2) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI534799A/duck/Zhejiang/D11/2013 (A/H3N2) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI469171A/wild duck/Guangdong/520/2001 (A/H1N9) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI99874A/duck/Denmark/65047/04 (A/H5N2) segment 1 (PB2)3707.30.000000e+002182/2270 (96%)EPI619190A/mallard/Sweden/2990/2003 (A/H8N4) segment 1 (PB2)3701.80.000000e+002181/2270 (96%)EPI485923A/mallard/Sweden/39/2002 (A/H5N3) segment 1 (PB2)3701.80.000000e+002181/2270 (96%)EPI469163A/common teal/Hong Kong/MPD322/2007 (A/H11N9) segment 1 (PB2)3701.80.000000e+002181/2270 (96%)EPI401365A/wild bird/Korea/YS109/2007 (A/H4N6) segment 1 (PB2)3701.80.000000e+002181/2270 (96%)EPI182409A/duck/Primorie/2633/01 (A/H5N3) segment 1 (PB2)3701.80.000000e+002181/2270 (96%)EPI619284A/mallard/Sweden/2834/2003 (A/H8N4) segment 1 (PB2)3696.30.000000e+002180/2270 (96%)EPI485633A/mallard/Sweden/7/2002 (A/H5N2) segment 1 (PB2)3696.30.000000e+002180/2270 (96%)EPI469164A/northern pintail/Hong Kong/MPC2085/2007 (A/H11N9) segment 1 (PB2)3696.30.000000e+002180/2270 (96%)EPI469162A/wild waterfowl/Hong Kong/MPC729/2006 (A/H11N9) segment 1 (PB2)3696.30.000000e+002180/2270 (96%)EPI251798A/mallard/Sweden/8/2003 (A/H8N4) segment 1 (PB2)3696.30.000000e+002180/2270 (96%)EPI251723A/mallard/Sweden/48/2002 (A/H11N9) segment 1 (PB2)3696.30.000000e+002180/2270 (96%)EPI68178A/duck/Italy/775/2004 (A/H5N3) segment 1 (PB2)3696.30.000000e+002181/2271 (96%)EPI387373A/whooper swan/Mongolia/1-21/2007 (A/H3N1) segment 1 (PB2)3694.40.000000e+002179/2269 (96%)EPI514880A/mallard/Sweden/1195/2002 (A/H4N2) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI514859A/mallard/Sweden/814/2002 (A/H4N9) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI485710A/mallard/Sweden/49/2002 (A/H5N9) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI406913A/great black-headed gull/Qinghai/2/2007 (A/H5N1) segment 1 (PB2)3690.70.000000e+002118/2178 (97%)EPI406912A/bar-headed goose/Qinghai/F/2007 (A/H5N1) segment 1 (PB2)3690.70.000000e+002118/2178 (97%)EPI377744A/mallard/Sweden/111/2002 (A/H2N7) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI290280A/chicken/Netherlands/03006724/03(H7N7) (A/H7N7) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI290193A/chicken/Netherlands/03003096/03(H7N7) (A/H7N7) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI237756A/chicken/Netherlands/03009274/03 (A/H7N7) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI237747A/chicken/Netherlands/03008060/03 (A/H7N7) segment 1 (PB2)3690.70.000000e+002179/2270 (95%)EPI618203A/mallard/Sweden/1645/2002 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI617060A/mallard/Sweden/1671/2002 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI514918A/mallard/Sweden/274/2002 (A/H4N2) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI446494A/wild goose/Dongting/PC0360/2012 (A/H7N7) segment 1 (PB2)3685.20.000000e+002179/2271 (95%)EPI377756A/mallard/Sweden/112/2002 (A/H2N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI295046A/chicken/Netherlands/03013833/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294992A/chicken/Netherlands/03009124/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294968A/chicken/Netherlands/03008489/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294959A/chicken/Netherlands/03008110/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294938A/chicken/Netherlands/03008233/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294923A/chicken/Netherlands/621629/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294914A/chicken/Netherlands/03003214/03(H7N7)/strain2 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294911A/chicken/Netherlands/03003214/03(H7N7)/strain1 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI294905A/chicken/Netherlands/03002973/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290475A/chicken/Netherlands/03008926/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290468A/chicken/Netherlands/03008926/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290465A/chicken/Netherlands/03009656/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290462A/domestic duck/Netherlands/621627/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290409A/chicken/Netherlands/03009892/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290340A/chicken/Netherlands/03009126/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290316A/chicken/Netherlands/03008199/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290313A/chicken/Netherlands/03009007/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290295A/chicken/Netherlands/03008451/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290253A/chicken/Netherlands/03006725/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290235A/chicken/Netherlands/03003401/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290229A/chicken/Netherlands/03003255/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290220A/chicken/Netherlands/03003402/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290214A/chicken/Netherlands/03003243/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290208A/chicken/Netherlands/03003111/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290205A/chicken/Netherlands/03003113/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290202A/chicken/Netherlands/03003106/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290190A/chicken/Netherlands/03002971/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI290181A/chicken/Netherlands/03003010/03(H7N7) (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237835A/turkey/Netherlands/03009333/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237832A/chicken/Netherlands/03008128/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237823A/chicken/Netherlands/03011422/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237805A/chicken/Netherlands/03013010/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237802A/turkey/Netherlands/03012387/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237753A/chicken/Netherlands/03008377/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237750A/chicken/Netherlands/03008113/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237744A/chicken/Netherlands/03003531/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)EPI237656A/chicken/Netherlands/03003092/03 (A/H7N7) segment 1 (PB2)3685.20.000000e+002178/2270 (95%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687190A/chicken/Scotland/532/2016 (A/H5N1) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI513559A/mallard/Sweden/101180/2009 (A/H4N6) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI513552A/mallard/Sweden/101081/2009 (A/H4N6) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI513538A/mallard/Sweden/100881/2009 (A/H4N6) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI513499A/mallard/Sweden/101431/2009 (A/H4N6) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI513485A/mallard/Sweden/101298/2009 (A/H4N6) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI248496A/mallard/Germany-RP/R193/09 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI439562A/avian/Israel/824/2005 (A/H10N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI367576A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 7 (MP)1768.40.000000e+00973/981 (99%)EPI619262A/mallard/Sweden/60041/2007 (A/H8N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI377995A/common teal/Netherlands/2/2008 (A/H2N3) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI372421A/teal/Egypt/01207-NAMRU3/2007 (A/H10N7) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI372413A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI372397A/shoveler/Egypt/01198-NAMRU3/2007 (A/H10N7) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI372350A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI398925A/common gull/Norway/10_1602/2009 (A/H6N8) segment 7 (MP)1762.80.000000e+00972/981 (99%)EPI220565A/mallard/Czech Republic/15307-17/2008 (A/H0) segment 7 (MP)1762.80.000000e+00972/981 (99%)EPI619097A/mallard/Sweden/68537/2007 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI618488A/mallard/Sweden/101589/2009 (A/H11N9) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI514674A/mallard/Sweden/7925/2005 (A/H4N6) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI514029A/mallard/Sweden/68575/2007 (A/H4N6) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI513814A/mallard/Sweden/79445/2008 (A/H4N6) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI513583A/mallard/Sweden/80415/2008 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI513567A/mallard/Sweden/80348/2008 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476117A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476111A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476097A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476067A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476051A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476044A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476031A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI378011A/mallard/Netherlands/12/2008 (A/H2N3) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI372461A/teal/Egypt/01351-NAMRU3/2007 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI363933A/duck/Guizhou/1560/2007 (A/H6N8) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI296553A/dunlin/Sweden/1/2005 (A/H4N6) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI190341A/mallard/Netherlands/1/2006 (A/H8N4) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI182146A/Bewick's swan/Netherlands/5/2007 (A/H9N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI182106A/mallard/Netherlands/11/2007 (A/H6N5) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI284616A/swan/Slovenia/53/2009 (A/H7N7) segment 7 (MP)1757.30.000000e+00971/981 (98%)EPI682981A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI629352A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI629342A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI476104A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI476037A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI377987A/mallard/Netherlands/58/2008 (A/H2N3) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI377979A/mallard/Netherlands/37/2008 (A/H2N3) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI372437A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI372429A/shoveler/Egypt/00004-NAMRU3/2007 (A/H10N9) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI372405A/shoveler/Egypt/00215-NAMRU3/2007 (A/H7N9) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI296609A/mallard/Sweden/90/2005 (A/H11N9) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI182050A/turnstone/Netherlands/1/2007 (A/H3N8) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI181962A/mallard/Netherlands/2/2005 (A/H4N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI168526A/mute swan/Aktau/1460/2006 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI367592A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 7 (MP)1751.70.000000e+00970/981 (98%)EPI619206A/mallard/Sweden/4486/2004 (A/H8N4) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI619147A/mallard/Sweden/50055/2006 (A/H8N4) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI618781A/mallard/Sweden/93475/2009 (A/H10N6) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI618547A/mallard/Sweden/58705/2006 (A/H5N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI617979A/mallard/Republic of Georgia/2/2010 (A/H7N7) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI617769A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI617749A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI586235A/muskrat/Russia/63/2014 (A/H2N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI514272A/mallard/Sweden/52334/2006 (A/H4N6) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI514177A/mallard/Sweden/58463/2006 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI513821A/mallard/Sweden/79956/2008 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI513531A/mallard/Sweden/100049/2009 (A/H4N6) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI513524A/mallard/Sweden/99967/2009 (A/H4N6) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI484290A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI464925A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI439568A/avian/Israel/320/2001 (A/H6N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI372334A/shoveler/Egypt/09781-NAMRU3/2004 (A/H10N7) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI372318A/shoveler/Egypt/09864-NAMRU3/2004 (A/H7N7) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI372310A/shoveler/Egypt/09782-NAMRU3/2004 (A/H10N7) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI296633A/northern shoveler/Netherlands/1/2006 (A/H8N4) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI224484A/mallard/Netherlands/2/2005 (A/H5N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398949A/mallard/Norway/10_779/2009 (A/H3N8) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI387835A/wild bird/Korea/A323/2009 (A/H10N1) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI316771A/mallard/Czech Republic/13579-84K/2010 (A/H4N6) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI222177A/mallard/Czech Republic/14884-34/2007 (A/H9N2) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI222176A/mallard/Czech Republic/14760-3/2007 (A/H4) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI439566A/avian/Israel/289/2001 (A/H6N2) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI619241A/mallard/Sweden/5932/2005 (A/H10N7) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI619214A/mallard/Sweden/4737/2004 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI618899A/mallard/Sweden/6148/2005 (A/H10N7) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI618886A/mallard/Sweden/5933/2005 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI618870A/mallard/Sweden/5824/2005 (A/H10N7) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI560343A/Italy/3/2013 (A/H7N7) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI559668A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI544354A/harbour seal/Germany/1/2014 (A/H10N7) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI533779A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI533773A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514991A/mallard/Sweden/51880/2006 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514946A/mallard/Sweden/52405/2006 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514621A/mallard/Sweden/51284/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514613A/mallard/Sweden/51198/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514578A/mallard/Sweden/51586/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514570A/mallard/Sweden/51576/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514563A/mallard/Sweden/51541/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514556A/mallard/Sweden/51539/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI514549A/mallard/Sweden/51532/2006 (A/H4N6) segment 7 (MP)1742.50.000000e+00969/982 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687189A/chicken/Scotland/532/2016 (A/H5N1) segment 6 (NA)2597.50.000000e+001410/1410 (100%)EPI617857A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 6 (NA)2436.90.000000e+001379/1410 (97%)EPI682989A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 6 (NA)2414.70.000000e+001376/1411 (97%)EPI682990A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 6 (NA)2409.20.000000e+001375/1411 (97%)EPI617892A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 6 (NA)2375.90.000000e+001368/1410 (97%)EPI485316A/common goldeneye/Mongolia/1216/2010 (A/H1N1) segment 6 (NA)2348.20.000000e+001364/1411 (96%)EPI485327A/tufted duck/Mongolia/1409/2010 (A/H1N1) segment 6 (NA)2342.70.000000e+001363/1411 (96%)EPI485314A/common goldeneye/Mongolia/1238/2010 (A/H1N1) segment 6 (NA)2337.10.000000e+001362/1411 (96%)EPI354438A/chicken/Pakistan/NARC-16945/2010 (A/H3N1) segment 6 (NA)2331.60.000000e+001360/1410 (96%)EPI485350A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 6 (NA)2315.00.000000e+001357/1410 (96%)EPI270064A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 6 (NA)2303.90.000000e+001355/1410 (96%)EPI618822A/mallard/Sweden/104746/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI618811A/mallard/Sweden/102260/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI618797A/mallard/Sweden/102087/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI618724A/mallard/Sweden/105486/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI618698A/mallard/Sweden/105404/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI618584A/mallard/Sweden/105565/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI617126A/mallard/Sweden/102214/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI463435A/mallard/Sweden/105522/2009 (A/H10N1) segment 6 (NA)2298.40.000000e+001355/1411 (96%)EPI618837A/mallard/Sweden/105254/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618830A/mallard/Sweden/105186/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618752A/mallard/Sweden/105364/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618745A/mallard/Sweden/105536/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618731A/mallard/Sweden/105501/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618717A/mallard/Sweden/105474/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618711A/mallard/Sweden/105465/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618686A/mallard/Sweden/105402/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618684A/mallard/Sweden/105259/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618673A/mallard/Sweden/105365/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618597A/mallard/Sweden/107688/2009 (A/H10N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI463395A/mallard/Sweden/104803/2009 (A/H1N1) segment 6 (NA)2292.80.000000e+001354/1411 (95%)EPI618699A/mallard/Sweden/105323/2009 (A/H10N1) segment 6 (NA)2287.30.000000e+001353/1411 (95%)EPI485321A/mallard /Mongolia/1551/2010 (A/H3N1) segment 6 (NA)2281.70.000000e+001351/1410 (95%)EPI485358A/ruddy shelduck/Mongolia/1209/2010 (A/H7N1) segment 6 (NA)2276.20.000000e+001351/1411 (95%)EPI485317A/ruddy shelduck/Mongolia/1189/2010 (A/H7N1) segment 6 (NA)2276.20.000000e+001351/1411 (95%)EPI485313A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 6 (NA)2276.20.000000e+001351/1411 (95%)EPI361731A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 6 (NA)2268.80.000000e+001343/1401 (95%)EPI361723A/watercock/Thailand/CU-W3699/2009 (A/H12N1) segment 6 (NA)2263.30.000000e+001346/1407 (95%)EPI339177A/domestic goose/Germany-MV/R3298/2009 (A/H6N1) segment 6 (NA)2263.30.000000e+001349/1411 (95%)EPI244099A/goose/Germany/R3298/09 (A/H6N1) segment 6 (NA)2263.30.000000e+001349/1411 (95%)EPI337015A/duck/Zhejiang/2245/2011 (A/H5N1) segment 6 (NA)2259.60.000000e+001347/1410 (95%)EPI168546A/duck/Mongolia/540/2001 (A/H1N1) segment 6 (NA)2254.00.000000e+001346/1410 (95%)EPI168544A/duck/Mongolia/116/2002 (A/H1N1) segment 6 (NA)2254.00.000000e+001347/1411 (95%)EPI372465A/teal/Egypt/01351-NAMRU3/2007 (A/H1N1) segment 6 (NA)2252.20.000000e+001347/1411 (95%)EPI316304A/chicken/Netherlands/11004875/11 (A/H7N1) segment 6 (NA)2252.20.000000e+001328/1383 (96%)EPI168545A/duck/Mongolia/253/2003 (A/H1N1) segment 6 (NA)2248.50.000000e+001346/1411 (95%)EPI361751A/lesser whistling-duck/Thailand/CU-W3947/2010 (A/H12N1) segment 6 (NA)2246.60.000000e+001337/1398 (95%)EPI361743A/lesser whistling-duck/Thailand/CU-W3946/2010 (A/H12N1) segment 6 (NA)2246.60.000000e+001339/1401 (95%)EPI268145A/mallard/Jiangxi/227/2003 (A/H6N1) segment 6 (NA)2243.00.000000e+001345/1411 (95%)EPI243275A/R(duck/Mongolia/54/01-duck/Mongolia/47/01) (A/H5N1) segment 6 (NA)2243.00.000000e+001344/1410 (95%)EPI3419A/duck/Mongolia/47/01 (A/H7N1) segment 6 (NA)2243.00.000000e+001344/1410 (95%)EPI1654A/duck/Hokkaido/Vac-1/04 (A/H5N1) segment 6 (NA)2243.00.000000e+001344/1410 (95%)EPI268141A/duck/Hunan/177/2005 (A/H6N1) segment 6 (NA)2231.90.000000e+001343/1411 (95%)EPI132374A/duck/Eastern China/253/2003 (A/H3N1) segment 6 (NA)2231.90.000000e+001344/1412 (95%)EPI132364A/duck/Eastern China/103/2003 (A/H1N1) segment 6 (NA)2231.90.000000e+001343/1411 (95%)EPI618108A/black-headed gull/Republic of Georgia/1/2010 (A/H11N1) segment 6 (NA)2226.30.000000e+001342/1411 (95%)EPI364203A/duck/Guizhou/879/2006 (A/H6N1) segment 6 (NA)2226.30.000000e+001341/1410 (95%)EPI168547A/duck/Mongolia/610/2002 (A/H1N1) segment 6 (NA)2226.30.000000e+001341/1410 (95%)EPI132370A/duck/Eastern China/243/2003 (A/H3N1) segment 6 (NA)2226.30.000000e+001343/1412 (95%)EPI132312A/duck/Eastern China/213/2003 (A/H3N1) segment 6 (NA)2226.30.000000e+001343/1412 (95%)EPI132302A/duck/Eastern China/01/2002 (A/H3N1) segment 6 (NA)2226.30.000000e+001343/1412 (95%)EPI360056A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 6 (NA)2224.50.000000e+001342/1411 (95%)EPI363529A/duck/Guizhou/1426/2006 (A/H6N1) segment 6 (NA)2220.80.000000e+001340/1410 (95%)EPI181652A/duck/Chiba/884/2004 (A/H3N1) segment 6 (NA)2220.80.000000e+001341/1411 (95%)EPI169705A/duck/Mongolia/867/2002 (A/H7N1) segment 6 (NA)2220.80.000000e+001340/1410 (95%)EPI102197A/duck/Taiwan/A68/03 (A/H6N1) segment 6 (NA)2220.80.000000e+001341/1411 (95%)EPI132398A/duck/Eastern China/231/2003 (A/H3N1) segment 6 (NA)2215.30.000000e+001341/1412 (94%)EPI132376A/duck/Eastern China/267/2003 (A/H3N1) segment 6 (NA)2215.30.000000e+001341/1412 (94%)EPI132334A/duck/Eastern China/262/2003 (A/H3N1) segment 6 (NA)2215.30.000000e+001341/1412 (94%)EPI467795A/European teal/Novosibirsk/261/2011 (A/H5N1) segment 6 (NA)2213.40.000000e+001341/1412 (94%)EPI467791A/European teal/Novosibirsk/203/2011 (A/H5N1) segment 6 (NA)2213.40.000000e+001341/1412 (94%)EPI356839A/chicken/England/1415-51184/2010 (A/H9N1) segment 6 (NA)2209.70.000000e+001339/1411 (94%)EPI268143A/mallard/Jiangxi/7787/2003 (A/H6N1) segment 6 (NA)2209.70.000000e+001339/1411 (94%)EPI467793A/European teal/Novosibirsk/239/2011 (A/H5N1) segment 6 (NA)2207.90.000000e+001340/1412 (94%)EPI417949A/duck/Hokkaido/W26/2012 (A/H12N1) segment 6 (NA)2204.20.000000e+001339/1412 (94%)EPI268140A/mallard/Jiangxi/10071/2005 (A/H6N1) segment 6 (NA)2204.20.000000e+001338/1411 (94%)EPI181651A/duck/Tsukuba/718/2005 (A/H1N1) segment 6 (NA)2204.20.000000e+001338/1411 (94%)EPI132372A/duck/Eastern China/252/2003 (A/H3N1) segment 6 (NA)2204.20.000000e+001340/1413 (94%)EPI132332A/duck/Eastern China/233/2003 (A/H3N1) segment 6 (NA)2204.20.000000e+001339/1412 (94%)EPI268144A/mallard/Jiangxi/6845/2003 (A/H6N1) segment 6 (NA)2202.30.000000e+001339/1412 (94%)EPI132368A/duck/Eastern China/152/2003 (A/H1N1) segment 6 (NA)2200.50.000000e+001340/1414 (94%)EPI645333A/duck/Thailand/CU-13011C/2013 (A/H0) segment 6 (NA)2198.60.000000e+001337/1411 (94%)EPI181650A/duck/Tsukuba/67/2005 (A/H1N1) segment 6 (NA)2198.60.000000e+001337/1411 (94%)EPI168540A/duck/Hokkaido/W73/2007 (A/H1N1) segment 6 (NA)2198.60.000000e+001337/1411 (94%)EPI132304A/duck/Eastern China/341/2003 (A/H3N1) segment 6 (NA)2198.60.000000e+001339/1413 (94%)EPI161648A/duck/Hokkaido/143/03 (A/H7N1) segment 6 (NA)2196.80.000000e+001338/1412 (94%)EPI345776A/duck/Eastern China/34/2005 (A/H6N1) segment 6 (NA)2191.20.000000e+001337/1412 (94%)EPI268139A/mallard/Jiangxi/10668/2005 (A/H6N1) segment 6 (NA)2182.00.000000e+001334/1411 (94%)EPI268138A/mallard/Jiangxi/13228/2005 (A/H6N1) segment 6 (NA)2176.50.000000e+001333/1411 (94%)EPI276115A/pintail/Miyagi/1472/2008 (A/H1N1) segment 6 (NA)2174.60.000000e+001333/1411 (94%)EPI439196A/mallard/Republic of Georgia/1/2010 (A/H10N1) segment 6 (NA)2170.90.000000e+001283/1337 (95%)EPI13887A/duck/France/05066b/2005 (A/H5N1) segment 6 (NA)2170.90.000000e+001332/1411 (94%)EPI326931A/duck/Korea/GJ74/2007 (A/H3N1) segment 6 (NA)2169.10.000000e+001332/1411 (94%)EPI231219A/spot-billed duck/Korea/625/2008 (A/H6N1) segment 6 (NA)2169.10.000000e+001332/1411 (94%)EPI617943A/black-headed gull/Republic of Georgia/2/2011 (A/H9N1) segment 6 (NA)2165.40.000000e+001332/1412 (94%)EPI372362A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 6 (NA)2165.40.000000e+001330/1410 (94%)EPI276111A/pintail/Aomori/794/2008 (A/H1N1) segment 6 (NA)2163.50.000000e+001331/1411 (94%)EPI168538A/duck/Hokkaido/83/2004 (A/H1N1) segment 6 (NA)2161.70.000000e+001330/1411 (94%)EPI276107A/pintail/Aomori/422/2007 (A/H1N1) segment 6 (NA)2159.90.000000e+001330/1411 (94%)EPI168525A/mute swan/Aktau/1460/2006 (A/H5N1) segment 6 (NA)2159.90.000000e+001329/1410 (94%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI687187A/chicken/Scotland/532/2016 (A/H5N1) segment 4 (HA)3133.00.000000e+001698/1698 (100%)EPI401800A/little grebe/Xianghai/429/2011 (A/H5N2) segment 4 (HA)2861.60.000000e+001651/1700 (97%)EPI401775A/baikal teal/Xianghai/426/2011 (A/H5N2) segment 4 (HA)2861.60.000000e+001651/1700 (97%)EPI401776A/spot-billed duck/Xianghai/427/2011 (A/H5N2) segment 4 (HA)2856.00.000000e+001650/1700 (97%)EPI401801A/green-winged teal/Xianghai/430/2011 (A/H5N2) segment 4 (HA)2839.40.000000e+001648/1701 (96%)EPI515479A/razorbill/Scotland/7343/14 (A/H5) segment 4 (HA)2833.90.000000e+001646/1700 (96%)EPI401777A/canvasback/Xianghai/428/2011 (A/H5N2) segment 4 (HA)2789.60.000000e+001639/1701 (96%)EPI463587A/tundra swan/Shimane/3211A001/2011 (A/H5N2) segment 4 (HA)2780.30.000000e+001637/1701 (96%)EPI346524A/whooper swan/Germany-HE/R535/2009 (A/H5N2) segment 4 (HA)2774.80.000000e+001635/1700 (96%)EPI513954A/mallard/Sweden/79167/2008 (A/H0) segment 4 (HA)2772.90.000000e+001635/1700 (96%)EPI463189A/mallard/Sweden/101226/2009 (A/H5N3) segment 4 (HA)2772.90.000000e+001636/1701 (96%)EPI463188A/mallard/Sweden/101224/2009 (A/H5N9) segment 4 (HA)2772.90.000000e+001636/1701 (96%)EPI514999A/wild duck/Korea/PSC18-20/2010 (A/H5N8) segment 4 (HA)2769.20.000000e+001633/1698 (96%)EPI341765A/duck/Mongolia/194/2011 (A/H5N3) segment 4 (HA)2767.40.000000e+001635/1701 (96%)EPI341764A/duck/Mongolia/195/2011 (A/H5N3) segment 4 (HA)2767.40.000000e+001635/1701 (96%)EPI257228A/Anas platyrhynchos/09-884/2008 (A/H5N3) segment 4 (HA)2767.40.000000e+001634/1700 (96%)EPI257220A/Anas platyrhynchos/Belgium/09-762-P1/2008 (A/H5N1) segment 4 (HA)2767.40.000000e+001634/1700 (96%)EPI102615A/mallard/Bavaria/1/2005 (A/H5N2) segment 4 (HA)2767.40.000000e+001634/1700 (96%)EPI514998A/wild duck/Korea/PSC18-15/2010 (A/H5N8) segment 4 (HA)2763.70.000000e+001629/1693 (96%)EPI237594A/mallard/Bavaria/35/2006 (A/H5) segment 4 (HA)2761.90.000000e+001633/1700 (96%)EPI356413A/wild duck/Germany-BY/R2892/2009 (A/H5N3) segment 4 (HA)2756.30.000000e+001632/1700 (96%)EPI309084A/spur-winged goose/Nigeria/226/2008 (A/H5N2) segment 4 (HA)2756.30.000000e+001633/1701 (96%)EPI309082A/spur-winged goose/Nigeria/2/2008 (A/H5N2) segment 4 (HA)2756.30.000000e+001632/1700 (96%)EPI246379A/wild duck/Germany/R2892/09 (A/H5N3) segment 4 (HA)2756.30.000000e+001632/1700 (96%)EPI237602A/mallard/Bavaria/40/2006 (A/H5) segment 4 (HA)2756.30.000000e+001633/1701 (96%)EPI237598A/mallard/Bavaria/38/2006 (A/H5N3) segment 4 (HA)2756.30.000000e+001632/1700 (96%)EPI506049A/duck/Moscow/4182/2010 (A/H5N3) segment 4 (HA)2750.80.000000e+001632/1701 (95%)EPI372267A/shoveler/Egypt/20313-NAMRU3/2003 (A/H5N2) segment 4 (HA)2750.80.000000e+001631/1700 (95%)EPI272807A/mallard/PT/28003/2007 (A/H5N3) segment 4 (HA)2745.20.000000e+001630/1700 (95%)EPI463190A/mallard/Sweden/101288/2009 (A/H5N3) segment 4 (HA)2739.70.000000e+001620/1686 (96%)EPI272805A/mallard/PT/37369/2007 (A/H5N3) segment 4 (HA)2739.70.000000e+001628/1699 (95%)EPI63239A/teal/Italy/3812/2005 (A/H5N3) segment 4 (HA)2736.00.000000e+001629/1701 (95%)EPI272809A/mallard/PT/28006/2007 (A/H5N3) segment 4 (HA)2734.20.000000e+001627/1699 (95%)EPI164818A/mallard/Italy/4223-2/2006 (A/H5N2) segment 4 (HA)2734.20.000000e+001629/1701 (95%)EPI63220A/teal/Italy/3931-38/2005 (A/H5N2) segment 4 (HA)2728.60.000000e+001627/1700 (95%)EPI367589A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 4 (HA)2726.80.000000e+001630/1704 (95%)EPI68161A/duck/Italy/775/2004 (A/H5N3) segment 4 (HA)2723.10.000000e+001626/1700 (95%)EPI463185A/mallard/Sweden/101020/2009 (A/H5N9) segment 4 (HA)2721.20.000000e+001607/1672 (96%)EPI237597A/mallard/Bavaria/37/2006 (A/H5) segment 4 (HA)2721.20.000000e+001626/1701 (95%)EPI463187A/mallard/Sweden/101142/2009 (A/H5N2) segment 4 (HA)2719.40.000000e+001607/1672 (96%)EPI463180A/mallard/Sweden/100628/2009 (A/H5N3) segment 4 (HA)2719.40.000000e+001606/1671 (96%)EPI475939A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 4 (HA)2717.50.000000e+001626/1701 (95%)EPI296505A/mallard/Sweden/74/2003 (A/H5N2) segment 4 (HA)2717.50.000000e+001626/1701 (95%)EPI210107A/mallard/Italy/5582-21/2007 (A/H5N2) segment 4 (HA)2717.50.000000e+001626/1701 (95%)EPI463206A/mallard/Sweden/102063/2009 (A/H5N3) segment 4 (HA)2713.80.000000e+001606/1672 (96%)EPI210108A/mallard/Italy/5582-31/2007 (A/H5N2) segment 4 (HA)2713.80.000000e+001624/1700 (95%)EPI353349A/duck/Germany/R1789/2008 (A/H5N3) segment 4 (HA)2712.00.000000e+001622/1697 (95%)EPI222868A/teal/Crimea/97/2008 (A/H5N2) segment 4 (HA)2710.20.000000e+001613/1683 (95%)EPI506530A/duck/Thailand/CU-12205C/2012 (A/H5N8) segment 4 (HA)2706.50.000000e+001624/1701 (95%)EPI106314A/teal/Italy/3931/2005 (A/H5N2) segment 4 (HA)2704.60.000000e+001614/1688 (95%)EPI237600A/mallard/Bavaria/39/2006 (A/H5N3) segment 4 (HA)2700.90.000000e+001623/1701 (95%)EPI210109A/duck/Italy/4445/2007 (A/H5N2) segment 4 (HA)2700.90.000000e+001623/1701 (95%)EPI467790A/European teal/Novosibirsk/203/2011 (A/H5N1) segment 4 (HA)2695.40.000000e+001623/1702 (95%)EPI237642A/swan/Bavaria/15/2007 (A/H5N2) segment 4 (HA)2695.40.000000e+001621/1700 (95%)EPI227120A/duck/France/05054a/2005 (A/H5N3) segment 4 (HA)2695.40.000000e+001622/1701 (95%)EPI367581A/mallard/Czech Republic/14602-37K/2011 (A/H5N2) segment 4 (HA)2689.80.000000e+001621/1701 (95%)EPI447388A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)2684.30.000000e+001620/1701 (95%)EPI447374A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)2684.30.000000e+001620/1701 (95%)EPI244110A/goose/Germany/R3160/09 (A/H5N2) segment 4 (HA)2684.30.000000e+001620/1701 (95%)EPI60367A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)2684.30.000000e+001620/1701 (95%)EPI467794A/European teal/Novosibirsk/261/2011 (A/H5N1) segment 4 (HA)2678.80.000000e+001620/1702 (95%)EPI447402A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)2678.80.000000e+001619/1701 (95%)EPI447381A/mallard/Italy/3401/2005 (A/H5N1) segment 4 (HA)2678.80.000000e+001619/1701 (95%)EPI309083A/spur-winged goose/Nigeria/210/2008 (A/H5N2) segment 4 (HA)2667.70.000000e+001580/1646 (95%)EPI26823A/mallard/Sweden/7/02 (A/H5N2) segment 4 (HA)2667.70.000000e+001618/1702 (95%)EPI26821A/mallard/Sweden/2/02 (A/H5N2) segment 4 (HA)2667.70.000000e+001618/1702 (95%)EPI214909A/duck/Tulcea/RO-AI-LPAI/2009 (A/H5N3) segment 4 (HA)2664.00.000000e+001578/1644 (95%)EPI237595A/mallard/Bavaria/36/2006 (A/H5N3) segment 4 (HA)2662.10.000000e+001615/1700 (95%)EPI235186A/mallard/Denmark/64650/03 (A/H5N7) segment 4 (HA)2662.10.000000e+001617/1702 (95%)EPI227126A/duck/France/05057b/2005 (A/H5N2) segment 4 (HA)2662.10.000000e+001616/1701 (95%)EPI24741A/mallard/Netherlands/3/99 (A/H5N2) segment 4 (HA)2662.10.000000e+001616/1701 (95%)EPI590265A/duck/Hokkaido/W240/2014 (A/H5N3) segment 4 (HA)2658.40.000000e+001615/1701 (94%)EPI574244A/mule duck/Bulgaria/25/2011 (A/H5N2) segment 4 (HA)2656.60.000000e+001614/1700 (94%)EPI574174A/mule duck/Bulgaria/237/2011 (A/H5N2) segment 4 (HA)2656.60.000000e+001614/1700 (94%)EPI548419A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 4 (HA)2656.60.000000e+001616/1702 (94%)EPI538471A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 4 (HA)2656.60.000000e+001616/1702 (94%)EPI354764A/duck/Bulgaria/Shishmanzi-26/11 (A/H5N2) segment 4 (HA)2656.60.000000e+001614/1700 (94%)EPI354762A/duck/Bulgaria/Shishmanzi-23/11 (A/H5N2) segment 4 (HA)2656.60.000000e+001615/1701 (94%)EPI590264A/duck/Hokkaido/W280/2014 (A/H5N3) segment 4 (HA)2652.90.000000e+001614/1701 (94%)EPI464922A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 4 (HA)2652.90.000000e+001591/1667 (95%)EPI394683A/mallard/Denmark/64650/2003 (A/H5N7) segment 4 (HA)2651.10.000000e+001615/1702 (94%)EPI354763A/duck/Bulgaria/Shishmanzi-25/11 (A/H5N2) segment 4 (HA)2651.10.000000e+001613/1700 (94%)EPI26837A/mallard/Sweden/39/02 (A/H5N3) segment 4 (HA)2651.10.000000e+001614/1701 (94%)EPI574269A/mule duck/Bulgaria/209/2011 (A/H5N2) segment 4 (HA)2640.00.000000e+001608/1695 (94%)EPI574248A/mule duck/Bulgaria/328/2011 (A/H5N8) segment 4 (HA)2640.00.000000e+001610/1700 (94%)EPI560295A/duck/Mongolia/107/2014 (A/H5N7) segment 4 (HA)2640.00.000000e+001612/1701 (94%)EPI534746A/mallard/Finland/13748/2007 (A/H5N2) segment 4 (HA)2640.00.000000e+001611/1700 (94%)EPI485695A/mallard/Sweden/7/2002 (A/H5N2) segment 4 (HA)2640.00.000000e+001603/1687 (95%)EPI413881A/ostrich/South Africa/AI2114/2011 (A/H5N2) segment 4 (HA)2640.00.000000e+001612/1702 (94%)EPI375595A/pheasant/Ireland/PV12-010728/12 (A/H5N2) segment 4 (HA)2640.00.000000e+001615/1704 (94%)EPI99870A/duck/Denmark/65047/04 (A/H5N2) segment 4 (HA)2640.00.000000e+001612/1701 (94%)EPI567104A/duck/Mongolia/256/2014 (A/H5N2) segment 4 (HA)2634.40.000000e+001611/1701 (94%)EPI567103A/duck/Mongolia/211/2014 (A/H5N7) segment 4 (HA)2634.40.000000e+001611/1701 (94%)EPI467792A/European teal/Novosibirsk/239/2011 (A/H5N1) segment 4 (HA)2634.40.000000e+001614/1704 (94%)EPI413888A/ostrich/South Africa/AI2214/2011 (A/H5N2) segment 4 (HA)2634.40.000000e+001611/1702 (94%)EPI267601A/mallard/Netherlands/3/1999 (A/H5N2) segment 4 (HA)2634.40.000000e+001601/1686 (94%)EPI513421A/mallard/Sweden/101782/2009 (A/H0) segment 4 (HA)2628.90.000000e+001609/1700 (94%)EPI590281A/duck/Hokkaido/166/2014 (A/H5N2) segment 4 (HA)2625.20.000000e+001611/1703 (94%)EPI590249A/duck/Hokkaido/WZ20/2014 (A/H5N2) segment 4 (HA)2625.20.000000e+001610/1702 (94%)EPI560294A/duck/Hokkaido/WZ20/2014 (A/H5N2) segment 4 (HA)2625.20.000000e+001610/1702 (94%)