niman

ResultsOverall, 132 of the 385 animals slaughtered during this period (34%; daily range: 24%–43%) were sampled shortly after slaughter. Nasal swabs were collected from all 132 camels, while serum samples were obtained from 131. MERS-CoV RNA was detected by both UpE and ORF-1a RT-qPCR assays in 14 (11%), nasal swabs with positive samples being found in five of the seven days sampled (Table). Threshold cycles of the positives by UpE assay ranged from 23.8 to 37.4, which represented 3.54x102 to 2.60x106 copies of virus RNA per 1 mL of original swab sample. Ages of the MERS-CoV positive animals ranged from three to 12 years-old. TableSwabs and sera collected from dromedary camels and results of reverse transcription-quantitative polymerase chain reaction and serology for Middle East respiratory syndrome coronavirus, Nigeria, January 2015 Sampling dateNumber of camels slaughteredSwabs sampledSwabs positive n (%)Sera sampledSera positive n (%)13 Jan 201545114 (36)119 (82)14 Jan 201554176 (35)1716 (94)15 Jan 201550180 (0)1818 (100)16 Jan 201548151 (7)1515 (100)17 Jan 201570302 (7)3028 (93)18 Jan 201555191 (5)1919 (100)19 Jan 201563220 (0)2120 (95)Total38513214 (11)131125 (95) On a daily basis, the seroprevalence ranged from 82% to 100%, giving an overall seroprevalence of 95% (Table). All 14 animals positive by RT-qPCR were also positive for MERS-CoV antibody by ppNT. The highest MERS-CoV RNA positive rate by RT-qPCR was detected on the days with lowest seroprevalence. We sequenced a 600 bp region in S2 gene of six selected RT-qPCR positive samples, representing at least one positive sample from each day with PCR-positive samples. Phylogenetic analysis showed that these six viruses formed two distinct lineages, the virus from a camel sampled on 16 January being distinct from the others (Figure 1). Figure 1Phylogenetic analysis of the Middle East respiratory syndrome coronaviruses (MERS-CoVs) recovered from Nigeria Phylogenetic tree of S2 (600 bp) gene sequences obtained by neighbour-joining method with bootstrap values >60 indicated. The tree is mid-point rooted. Sequences generated from this study are in bold with GenBank accession numbers: KU201953–58. Accession numbers of other sequences retrieved from GenBank are shown in brackets. Both of the Nigerian virus groups were distinct from previously known virus lineages. The Nigerian camel viruses were most closely related to virus NRCE-HKU270 previously found in Egypt with nt sequence similarity of 99.3 to 99.6%. MERS-CoV in Nigeria were genetically distinct from viruses found in camels in the Middle East and viruses detected in humans in more recent years (nt sequence similarity ranging from 98.4 to 99.4%) (Figure 2). Figure 2Pairwise similarities between nucleotide sequences of spike S2 region of Middle East respiratory syndrome coronaviruses, including several recovered from Nigeria and other representative viruses ID: identical virus. The time-resolved phylogeny of the ORF1b region of one virus confirms these overall findings (Figure 3). Figure 3Time resolved phylogenetic tree of open reading frame (ORF)1b of Middle East respiratory syndrome coronaviruses (MERS-CoVs) recovered in Africa and the Middle East, 2012–2015 The time resolved phylogenetic tree was constructed using Bayesian evolutionary analysis by sampling trees (BEAST) with an uncorrelated lognormal relaxed clock based on open reading frame (ORF)1b (5,347 bp) gene sequences of representative MERS-CoVs. Median ages of the nodes with respective to MERS-CoV ChinaGD (the latest virus included) are shown. The tree is rooted to bat coronavirus Neoromicia. The sequence generated from this study (Nigeria-HKU004) is in bold and has GenBank accession number KU201959. GenBank accession numbers of other sequences retrieved for the phylogenetic analysis are shown in brackets. We derived the nt sequence of the full spike gene of one virus Nigeria HKU004 and the deduced amino acid sequence is aligned and compared to those of other human and animal MERS-CoV in Figure 4. This reveals that the receptor binding domain, which is crucial for virus host range and tropism, is fully conserved. There are only two amino acid residues not previously reported in other MERS-CoV spike proteins; these being S 656 T and L 1200 F. Figure 4Alignment of the full spike protein amino acid sequence of a Middle East respiratory syndrome coronavirus (MERS-CoV) found in Nigeria with those of other MERS-CoVs GenBank accession number for MERS-CoV Nigeria HKU004 was KU201953. RBD: receptor binding domain; UD: undefined.

MethodsThe study was carried out on seven consecutive days in January 2015. Nasal swabs and blood were collected from camels shortly after slaughter at the abattoir in Kano, Nigeria. Some of the animals slaughtered at this abattoir originate from northern Nigeria, as well as neighbouring African countries including Chad, Libya, Mali, Niger and Sudan. Nasal swabs were collected in RNALater (Ambion) or in virus transport medium and stored at -80 °C. Blood samples were collected and serum separated. The age of the sampled camels was assessed by dental examination. Samples were shipped to the laboratory at The University of Hong Kong on dry ice for laboratory investigation. Total nucleic acid was extracted from swab samples using EasyMag (Biomerieux), and tested for the presence of MERS-CoV RNA by upstream of the Envelope gene (UpE) reverse transcription-quantitative polymerase chain reaction (RT-qPCR) hydrolysis probe assay. All positive specimens were confirmed by a second RT-qPCR assay targeting the open reading frame (ORF)1a region of the genome [6]. The S2 region of the positive samples were amplified and sequenced for phylogenetic characterisation [10]. The full spike gene and 5kb of the ORF1b region of one virus were sequenced for more detailed analysis. Sera were screened at a dilution of 1:20 for the detection of MERS-CoV antibody using a validated MERS-spike pseudoparticle neutralisation test (ppNT) as previously described [5].

IntroductionMiddle East respiratory syndrome coronavirus (MERS-CoV) is a novel lineage C betacoronavirus that can cause an acute viral respiratory disease in humans. As of 13 November 2015, there were 1,618 laboratory-confirmed cases of MERS reported to the World Health Organization (WHO), associated with 579 deaths [1,2]. Human disease is zoonotic in origin, although clusters of human-to-human transmission have been reported, especially within healthcare or family settings [1]. Dromedary camels in the Middle East have a high seroprevalence for MERS-CoV and MERS-CoV RNA has been consistently detected in these animals, especially in settings such as camel abattoirs, where camels from multiple origins are assembled. Camels are thus identified as a potential source of zoonotic MERS [3-6]. More than 60% of the global population of dromedary camels is distributed in African countries. Some of these countries are important camel exporters to the Arabian Peninsula [7]. MERS-CoV antibodies were also found with high prevalence in dromedary camels in these African countries with positive rates higher than 80% for the animals in Egypt, Ethiopia, Nigeria and Sudan, and of 30 to 54% in Tunisia [8]. However, zoonotic human disease has so far been reported only from countries in the Middle-East. The reason for the absence of zoonotic disease in Africa is unclear. The genetic diversity of the virus in Africa is poorly defined. The only reports of genetic sequences from Africa have been those from viruses in Egypt and these were genetically distinct from those currently causing human disease in the Middle East [6]. However, phenotypic characterisation of these viruses revealed they have capacity to infect tissues of the human respiratory tract [9]. There is a need to better understand the ecology of MERS-CoV within Africa and the viral genetic diversity within this region. We report detection rates of MERS-CoV in dromedary camels in the abattoir in Kano, Nigeria, where around 55 camels are slaughtered per day, making it the largest camel abattoir in that country. Viral sequences derived from nasal swabs of these animals are also phylogenetically analysed.

Evidence of current and past Middle East respiratory syndrome coronavirus (MERS-CoV) infection in dromedary camels slaughtered at an abattoir in Kano, Nigeria in January 2015, was sought by reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and serology. MERS-CoV RNA was detected in 14 (11%) of 132 nasal swabs and antibody in 126 (96%) of 131 serum samples. Phylogenetic analyses demonstrate that the viruses in Nigeria are genetically distinct from those reported in the Arabian peninsula.

Eurosurveillance, Volume 20, Issue 49, 10 December 2015Rapid communication MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS (MERS-COV) IN DROMEDARY CAMELS IN NIGERIA, 2015 DK Chu 1 2 , JO Oladipo 1 2 , RA Perera 2 , SA Kuranga 3 , SM Chan 2 , LL Poon 2 4 , M Peiris 2 4+ Author affiliations 1. These authors contributed equally to the work 2. School of Public Health, The University of Hong Kong, Hong Kong SAR 3. University of Ilorin, Ilorin, Nigeria 4. Pasteur Research Pole, The University of Hong Kong, Hong Kong SAR Correspondence: Malik Peiris ([email protected]) Citation style for this article: Chu D, Oladipo J, Perera R, Kuranga S, Chan S, Poon L, Peiris M. Middle East respiratory syndrome coronavirus (MERS-CoV) in dromedary camels in Nigeria, 2015. Euro Surveill. 2015;20(49):pii=30086. DOI: http://dx.doi.org/10.2807/1560-7917.ES.2015.20.49.30086 Received:10 November 2015; Accepted:10 December 2015

MERS confirmed, including sequences, in Camels in Nigeria - 2015 - Eurosurveillance. http://eurosurveillance.org/ViewArticle.aspx?ArticleId=21327

The governments of Canada and B.C. are investing $300,000 to strengthen the surveillance, early detection, and response measures to avian flu. The funding will be used to enhance the resources at the Ministry of Agriculture’s Animal Health Centre in Abbotsford with specialized equipment to diagnose samples collected in the Ministry’s avian flu surveillance efforts. Ministry of Agriculture staff began a pilot surveillance project that collected sediment samples at ponds and wetlands used by wild waterfowl following the December 2014 avian flu outbreak in the Fraser Valley. A research group has worked at developing cutting-edge technological advances to be able to test the samples collected from the pilot project for the presence of avian flu strains. Funds will be used to transfer this new technology to the Animal Health Centre. As the pilot project evolves into ongoing surveillance, the ability to diagnose the samples quickly at the Animal Health Centre will greatly enhance early detection efforts. The Ministry of Agriculture will also be targeting owners of small poultry flocks by hosting workshops in different regions focusing on poultry health, and the sharing of information and resources such as the Small Flock Poultry Health Manual at:http://www.agf.gov.bc.ca/ahc/poultry/small_flock_manual.pdfAdditional bio-security planning information for small flock owners is at:www.protectmyflock.ca/pmf/wp-content/uploads/2014/12/Biosecurity-Guide-for-Non-Supply-Managed-Poultry1.pdf In addition, funding is being provided to support a rapid response to any future outbreaks by having mobile equipment to help any infected poultry premises with the humane depopulation of infected bird populations within the province at all times and to train more responders in its use. The $300,000 is provided through the Biosecurity and Surveillance Program under Growing Forward 2, a five-year agreement launched in 2013 that provides a $3-billion, federal-provincial-territorial government investment in innovation, competitiveness and market development. Information on the Biosecurity and Surveillance Program is at:http://www2.gov.bc.ca/gov/content/industry/agriculture-seafood/programs/growing-forward-2/biosecurity-surveillance Learn More: Ministry of Agriculture Animal Health Centre Information:https://www.newsroom.gov.bc.ca/2014/03/bc-animal-health-centre-expertise-endorsed.html 2014 Fraser Valley Avian Flu Response: http://www.inspection.gc.ca/animals/terrestrial-animals/diseases/reportable/ai/2014-2015-ai-investigation-in-bc/eng/1418491040802/1418491095666

Canada steps up avian flu surveillance https://news.gov.bc.ca/releases/2015AGRI0077-002139

http://rense.gsradio.net:8080/rense/special/rense_121715_hr1.mp3

Novel Influenza A Virus:One human infection with a novel influenza A virus was reported by the state of Minnesota. The person was infected with an influenza A (H1N1) variant (H1N1v) virus. The patient was not hospitalized and has fully recovered from their illness. The patient lived and worked in an area near where swine were housed but no direct contact with swine was reported in the week prior to illness onset. No ongoing human-to-human transmission has been identified. Early identification and investigation of human infections with novel influenza A viruses are critical so that the risk of infection can be more fully appreciated and appropriate public health measures can be taken. Additional information on influenza in swine, variant influenza infection in humans, and strategies to interact safely with swine can be found at http://www.cdc.gov/flu/swineflu/index.htm. http://www.cdc.gov/flu/weekly/

Week 49 Flu View cites the detection of H1N1v in case in Minnesota with no documented swine contact.

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(MP)1781.30.000000e+00976/982 (99%)EPI612503A/swine/Minnesota/A01847477/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI612494A/swine/Minnesota/A01847455/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI539162A/Ohio/02/2014 (A/H3N2) segment 7 (MP)1777.60.000000e+00968/971 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI461427A/swine/Ohio/11SW233/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI461420A/swine/Ohio/11SW149/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI461386A/swine/Ohio/11SW238/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459607A/swine/Ohio/11SW144/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459599A/swine/Ohio/11SW121/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459591A/swine/Ohio/11SW127/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459573A/swine/Ohio/11SW230/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459535A/swine/Ohio/11SW349/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459520A/swine/Ohio/11SW223/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459499A/swine/Ohio/11SW111/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459488A/swine/Ohio/11SW133/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459466A/swine/Ohio/11SW344/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457158A/swine/Korea/CY03-19/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457150A/swine/Korea/CY03-18/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457142A/swine/Korea/CY03-17/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457134A/swine/Korea/CY03-16/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457126A/swine/Korea/CY03-15/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457118A/swine/Korea/CY03-14/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI453430A/swine/Korea/D79/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI441649A/swine/Iowa/A01445788/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433310A/swine/Iowa/A01444786/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415974A/swine/Ohio/11SW232/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415966A/swine/Ohio/11SW347/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415958A/swine/Ohio/11SW240/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415950A/swine/Ohio/11SW239/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415942A/swine/Ohio/11SW237/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415926A/swine/Ohio/11SW235/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415918A/swine/Ohio/11SW234/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415904A/swine/Ohio/11SW231/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415896A/swine/Ohio/11SW229/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415888A/swine/Ohio/11SW228/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415880A/swine/Ohio/11SW227/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415871A/swine/Ohio/11SW226/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415862A/swine/Ohio/11SW225/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415853A/swine/Ohio/11SW224/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415846A/swine/Ohio/11SW221/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415838A/swine/Ohio/11SW220/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415830A/swine/Ohio/11SW218/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415812A/swine/Ohio/11SW216/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415804A/swine/Ohio/11SW215/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415796A/swine/Ohio/11SW213/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415779A/swine/Ohio/11SW210/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415771A/swine/Ohio/11SW209/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415762A/swine/Ohio/11SW207/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415745A/swine/Ohio/11SW205/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415737A/swine/Ohio/11SW204/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415720A/swine/Ohio/11SW202/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415685A/swine/Ohio/11SW196/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415617A/swine/Ohio/11SW184/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415573A/swine/Ohio/11SW175/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415556A/swine/Ohio/11SW173/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415548A/swine/Ohio/11SW172/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415497A/swine/Ohio/11SW163/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415481A/swine/Ohio/11SW146/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415473A/swine/Ohio/11SW140/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415465A/swine/Ohio/11SW139/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415457A/swine/Ohio/11SW138/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415449A/swine/Ohio/11SW137/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415441A/swine/Ohio/11SW136/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415433A/swine/Ohio/11SW135/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415425A/swine/Ohio/11SW134/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415415A/swine/Ohio/11SW96/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415411A/swine/Ohio/11SW132/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415403A/swine/Ohio/11SW131/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415395A/swine/Ohio/11SW130/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415387A/swine/Ohio/11SW129/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415379A/swine/Ohio/11SW128/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415371A/swine/Ohio/11SW126/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415365A/swine/Ohio/11SW125/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415357A/swine/Ohio/11SW124/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415349A/swine/Ohio/11SW123/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415341A/swine/Ohio/11SW122/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415313A/swine/Ohio/11SW95/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415289A/swine/Ohio/11SW87/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415257A/swine/Ohio/11SW114/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415249A/swine/Ohio/11SW113/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415241A/swine/Ohio/11SW112/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415225A/swine/Ohio/11SW108/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI408330A/swine/Indiana/A01432188/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI406668A/swine/Iowa/A01203977/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397414A/Michigan/23/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397342A/Michigan/19/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395346A/Michigan/20/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391144A/swine/Indiana/A01202621/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391142A/swine/Indiana/A01202632/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI390882A/swine/Michigan/A01203374/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI390881A/swine/Indiana/A01203372/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI390671A/swine/Indiana/A01243255/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI388330A/Utah/10/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433327A/swine/Wyoming/A01444566/2013 (A/H3N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI620604A/swine/Iowa/A02076786/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584851A/swine/Nebraska/A01489870/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584830A/swine/Nebraska/A01489868/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI541963A/Ohio/4319/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00964/967 (99%)EPI539063A/swine/Nebraska/A01501767/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI532390A/swine/Illinois/A01411761/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI527873A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI527116A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI526872A/swine/Minnesota/A01480518/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI505095A/swine/Nebraska/A01409647/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI501539A/swine/South Dakota/A01366063/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499646A/swine/Iowa/A01290671/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492657A/swine/Nebraska/A01394342/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492356A/swine/Indiana/A00968365/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487955A/swine/Indiana/A01260366/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI476530A/swine/Illinois/A01398587/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI472154A/swine/Wyoming/A01397389/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI467890A/swine/Nebraska/A01397576/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI461446A/swine/Wyoming/A01381202/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI453429A/swine/Korea/A18/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451185A/swine/Pennsylvania/A01432652/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451178A/swine/Wyoming/A01379327/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451175A/swine/Wyoming/A01379354/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI438228A/swine/Indiana/A01260209/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427201A/swine/Indiana/A01260183/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI416865A/swine/Iowa/A01432207/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI415934A/swine/Ohio/11SW236/2011 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI415703A/swine/Ohio/11SW200/2011 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401145A/swine/North Carolina/A01270509/2012 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI399472A/swine/North Carolina/A01300820/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI620636A/swine/Iowa/A02076564/2015 (A/H1N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI623673A/swine/Iowa/A02076596/2015 (A/H1N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI600393A/swine/Iowa/A01555010/2014 (A/H1N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI573576A/swine/Iowa/A01469372/2014 (A/H1N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542540A/swine/Iowa/A01476152/2014 (A/H1N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI672955A/swine/Iowa/A01795227/2015 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI544936A/swine/Iowa/13H091/2013 (A/H0) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI492376A/swine/Iowa/A01399987/2013 (A/H1N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI489714A/swine/Minnesota/A01394042/2013 (A/H1N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI574168A/swine/Iowa/A01469493/2015 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI528420A/swine/Texas/13TOSU6273/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI526954A/swine/Texas/13TOSU6276/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506609A/swine/Nebraska/A01490415/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506603A/swine/Nebraska/A01490535/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506600A/swine/Nebraska/A01490456/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506597A/swine/Nebraska/A01490540/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI505004A/swine/Nebraska/A01490219/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI499931A/swine/Iowa/13H072/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506272A/swine/Minnesota/A01395979/2013 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI506263A/swine/Minnesota/A01395969/2013 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI499765A/swine/Iowa/A01290752/2013 (A/H0) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI460086A/swine/Minnesota/A01380666/2013 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI558872A/swine/Illinois/A01477750/2014 (A/H0) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI371322A/swine/Minnesota/A01116842/2011 (A/H1N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI476523A/swine/Minnesota/A01398642/2013 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI384480A/swine/Minnesota/A01116840/2011 (A/H1N2) segment 6 (NA)2499.60.000000e+001389/1407 (98%)EPI669317A/swine/Indiana/14TOSU0028/2014 (A/H1N2) segment 6 (NA)2479.30.000000e+001386/1408 (98%)EPI669300A/swine/Indiana/14TOSU0032/2014 (A/H1N2) segment 6 (NA)2479.30.000000e+001386/1408 (98%)EPI641453A/swine/Minnesota/A01823149/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI621571A/swine/Iowa/A01822306/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI621565A/swine/Iowa/A01822318/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI621562A/swine/Iowa/A01822297/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI620482A/swine/Minnesota/A01847873/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI600447A/swine/Iowa/A01476909/2014 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI669698A/swine/Ohio/14TOSU23771/2014 (A/H1N2) segment 6 (NA)2473.80.000000e+001385/1408 (98%)EPI669422A/swine/Ohio/14TOSU23764/2014 (A/H1N2) segment 6 (NA)2473.80.000000e+001385/1408 (98%)EPI546931A/swine/Indiana/A01260587/2014 (A/H1N2) segment 6 (NA)2473.80.000000e+001385/1408 (98%)EPI586051A/swine/Nebraska/A01555575/2015 (A/H1N2) segment 6 (NA)2471.90.000000e+001387/1411 (98%)EPI584797A/swine/Iowa/A01840985/2015 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI623642A/swine/Iowa/A02077617/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI612569A/swine/Iowa/A02076301/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI584806A/swine/Iowa/A01840987/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI371332A/swine/Minnesota/A01201294/2011 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI341743A/swine/Iowa/A01202063/2011 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI338587A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI371310A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 6 (NA)2446.10.000000e+001381/1410 (97%)EPI663372A/swine/Iowa/A02025591/2015 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI559398A/swine/Indiana/28-0202/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI559388A/swine/Indiana/28-0210/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI559298A/swine/Indiana/28-0223/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI399610A/swine/Pennsylvania/A01076779/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI399563A/swine/Pennsylvania/A01076777/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391079A/swine/Iowa/A01202576/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391073A/swine/Minnesota/A01202471/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391052A/swine/Iowa/A01202087/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI390950A/swine/Ohio/A01049357/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI384281A/swine/Minnesota/A01047910/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001379/1407 (98%)EPI384278A/swine/Minnesota/A01047909/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001379/1407 (98%)EPI371331A/swine/Minnesota/A01201102/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI369160A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI369159A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI369156A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI347612A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI338586A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI338584A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI338568A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI317022A/swine/Iowa/A01049071/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI314799A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI314797A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI291871A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI291869A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391191A/swine/Iowa/A01202677/2011 (A/H1N2) segment 6 (NA)2440.50.000000e+001380/1410 (97%)EPI367693A/swine/Minnesota/A01047500/2010 (A/H1N2) segment 6 (NA)2440.50.000000e+001380/1410 (97%)EPI653871A/swine/Illinois/A00857134/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI653860A/swine/Illinois/A00857131/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI653771A/swine/Illinois/A00857129/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI584491A/swine/Michigan/A01202035/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI559340A/swine/Indiana/28-0410/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI559314A/swine/Indiana/28-0415/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI559310A/swine/Indiana/28-0419/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI415678A/swine/Ohio/11SW195/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI415266A/swine/Ohio/11SW115/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI399584A/swine/Minnesota/A01327667/2012 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391418A/swine/Iowa/A01202879/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391384A/swine/Iowa/A01202878/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391128A/swine/Iowa/A01202639/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391122A/swine/Iowa/A01202529/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI390783A/swine/Minnesota/A01076123/2010 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI390782A/swine/Minnesota/A01076122/2010 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI384578A/swine/Illinois/A01116719/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI384530A/swine/Illinois/A01134851/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI371325A/swine/Minnesota/A01134248/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI371324A/swine/Minnesota/A01134236/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI369050A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI369039A/swine/Illinois/A00857138a/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI369024A/swine/Illinois/A00857300/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI367809A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI351656A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI341750A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI341749A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI338567A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI338447A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI399602A/swine/Illinois/A01240908/2012 (A/H3N2) segment 6 (NA)2435.00.000000e+001379/1410 (97%)EPI615608A/swine/Illinois/A01047046/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI615557A/swine/Illinois/A01047045/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI559278A/swine/Indiana/28-0403/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI489142A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI461426A/swine/Ohio/11SW233/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI461419A/swine/Ohio/11SW149/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI461393A/swine/Ohio/11SW208/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459606A/swine/Ohio/11SW144/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459598A/swine/Ohio/11SW121/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459590A/swine/Ohio/11SW127/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459534A/swine/Ohio/11SW349/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459495A/swine/Ohio/11SW162/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459487A/swine/Ohio/11SW133/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459465A/swine/Ohio/11SW344/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415967A/swine/Ohio/11SW347/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415831A/swine/Ohio/11SW218/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415822A/swine/Ohio/11SW217/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415797A/swine/Ohio/11SW213/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415772A/swine/Ohio/11SW209/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415713A/swine/Ohio/11SW201/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415652A/swine/Ohio/11SW189/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415642A/swine/Ohio/11SW187/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415634A/swine/Ohio/11SW186/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415626A/swine/Ohio/11SW185/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415600A/swine/Ohio/11SW180/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415565A/swine/Ohio/11SW174/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415531A/swine/Ohio/11SW170/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415523A/swine/Ohio/11SW169/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415516A/swine/Ohio/11SW168/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415506A/swine/Ohio/11SW166/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415490A/swine/Ohio/11SW161/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415482A/swine/Ohio/11SW146/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415474A/swine/Ohio/11SW140/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415466A/swine/Ohio/11SW139/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415458A/swine/Ohio/11SW138/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415450A/swine/Ohio/11SW137/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415442A/swine/Ohio/11SW136/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415434A/swine/Ohio/11SW135/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415426A/swine/Ohio/11SW134/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415412A/swine/Ohio/11SW132/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415404A/swine/Ohio/11SW131/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415396A/swine/Ohio/11SW130/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415388A/swine/Ohio/11SW129/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415380A/swine/Ohio/11SW128/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415372A/swine/Ohio/11SW126/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415366A/swine/Ohio/11SW125/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415358A/swine/Ohio/11SW124/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415350A/swine/Ohio/11SW123/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415342A/swine/Ohio/11SW122/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415290A/swine/Ohio/11SW87/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415274A/swine/Ohio/11SW118/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415234A/swine/Ohio/11SW109/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI398914A/swine/Illinois/A01134651/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391426A/swine/Iowa/A01203126/2012 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391425A/swine/Iowa/A01203125/2012 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391124A/swine/Iowa/A01202573/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391090A/swine/Indiana/A01202632/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391089A/swine/Indiana/A01202631/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391074A/swine/Minnesota/A01202472/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI390951A/swine/Ohio/A01049382/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI384551A/swine/Illinois/A01134656/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384503A/swine/Minnesota/A01134235/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384500A/swine/Minnesota/A01134221/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384443A/swine/Minnesota/A01116288/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384415A/swine/Illinois/A01047397/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384336A/swine/Minnesota/A01116364/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI371329A/swine/Minnesota/A01134593/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI371323A/swine/Minnesota/A01134226/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369161A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369158A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369066A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369058A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367700A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367692A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367691A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367690A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367689A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367688A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367687A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367686A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367685A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367684A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367683A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367682A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367681A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367680A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367679A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367678A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367677A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367674A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367673A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367672A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367671A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI344396A/Indiana/10/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI344388A/Indiana/10/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338597A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338596A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338590A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338583A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338451A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338449A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391051A/swine/Iowa/A01202086/2011 (A/H1N2) segment 6 (NA)2431.30.000000e+001378/1410 (97%)EPI384302A/swine/Minnesota/A01047499/2010 (A/H1N2) segment 6 (NA)2431.30.000000e+001376/1406 (97%)EPI341756A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA)2431.30.000000e+001378/1410 (97%)EPI489072A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 6 (NA)2429.50.000000e+001377/1408 (97%)EPI615601A/swine/Iowa/A01202444/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI615550A/swine/Illinois/A01047044/2010 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI506435A/swine/Indiana/A00968332/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI492955A/swine/Indiana/A00968349/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI489086A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI461385A/swine/Ohio/11SW238/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI459572A/swine/Ohio/11SW230/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI459527A/swine/Ohio/11SW177/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI459519A/swine/Ohio/11SW223/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI457170A/swine/Ohio/11SW208/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI439894A/swine/Wyoming/A01445305/2013 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415959A/swine/Ohio/11SW240/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415951A/swine/Ohio/11SW239/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415943A/swine/Ohio/11SW237/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415935A/swine/Ohio/11SW236/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415927A/swine/Ohio/11SW235/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415919A/swine/Ohio/11SW234/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415911A/swine/Ohio/11SW232/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415905A/swine/Ohio/11SW231/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415897A/swine/Ohio/11SW229/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415889A/swine/Ohio/11SW228/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415881A/swine/Ohio/11SW227/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415872A/swine/Ohio/11SW226/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415863A/swine/Ohio/11SW225/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415854A/swine/Ohio/11SW224/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415847A/swine/Ohio/11SW221/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415839A/swine/Ohio/11SW220/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415813A/swine/Ohio/11SW216/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415805A/swine/Ohio/11SW215/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415788A/swine/Ohio/11SW211/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415780A/swine/Ohio/11SW210/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415746A/swine/Ohio/11SW205/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415738A/swine/Ohio/11SW204/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415721A/swine/Ohio/11SW202/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415694A/swine/Ohio/11SW197/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415660A/swine/Ohio/11SW191/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415608A/swine/Ohio/11SW183/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415592A/swine/Ohio/11SW179/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415584A/swine/Ohio/11SW178/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415541A/swine/Ohio/11SW171/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI399248A/swine/Illinois/A01327348/2012 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI399021A/swine/Illinois/A01241916/2012 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3105.30.000000e+001694/1701 (99%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3096.10.000000e+001692/1701 (99%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3096.10.000000e+001692/1701 (99%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001683/1702 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001680/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001676/1699 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001675/1698 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1701 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI317003A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI671792A/swine/Illinois/A01857433/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2990.80.000000e+001672/1699 (98%)EPI395331A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2990.80.000000e+001672/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2990.80.000000e+001672/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI645058A/swine/Indiana/A01260926/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI457163A/swine/Indiana/9622/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI414156A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)

LOCUS KU143683 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU143683 VERSION KU143683.1 GI:960313905 KEYWORDS . SOURCE Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (12-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Ohio/A01857766/2015" /serotype="H3N2" /isolation_source="oral fluid" /host="swine" /db_xref="taxon:1755989" /segment="4" /country="USA: Ohio" /collection_date="14-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83309.1" /db_xref="GI:960313906" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDGFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRGSV NSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI LSGKSSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHHNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01857766.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctaccga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg gcttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tcgggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag gggttcagtt 481 aacagtttct ttagtagatt gaattggttg tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaggacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccgggaga catacttttg 781 attaatagca cagggaatct aattgcccct cggggttact tcaaaatact aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacacccta aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcacaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagctcc ttgttgccct ggagaaccaa catacaattg acctaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat tagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgtcgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA has released novel October 2015 H3N2v swine sequences with an H3 that matches 2012 cases and an N2 matching 2011 cases.

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1785.00.000000e+00976/981 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI467602A/swine/Iowa/A01244805/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI461427A/swine/Ohio/11SW233/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI461420A/swine/Ohio/11SW149/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI461386A/swine/Ohio/11SW238/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459607A/swine/Ohio/11SW144/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459599A/swine/Ohio/11SW121/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459591A/swine/Ohio/11SW127/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459573A/swine/Ohio/11SW230/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459535A/swine/Ohio/11SW349/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459520A/swine/Ohio/11SW223/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459499A/swine/Ohio/11SW111/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459488A/swine/Ohio/11SW133/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459466A/swine/Ohio/11SW344/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457158A/swine/Korea/CY03-19/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457150A/swine/Korea/CY03-18/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457142A/swine/Korea/CY03-17/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457134A/swine/Korea/CY03-16/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457126A/swine/Korea/CY03-15/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457118A/swine/Korea/CY03-14/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI453430A/swine/Korea/D79/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446730A/swine/Ohio/A01349559/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI441649A/swine/Iowa/A01445788/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI438206A/swine/Virginia/A01432419/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433310A/swine/Iowa/A01444786/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415974A/swine/Ohio/11SW232/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415966A/swine/Ohio/11SW347/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415958A/swine/Ohio/11SW240/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415950A/swine/Ohio/11SW239/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415942A/swine/Ohio/11SW237/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415926A/swine/Ohio/11SW235/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415918A/swine/Ohio/11SW234/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415904A/swine/Ohio/11SW231/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415896A/swine/Ohio/11SW229/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415888A/swine/Ohio/11SW228/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415880A/swine/Ohio/11SW227/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415871A/swine/Ohio/11SW226/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415862A/swine/Ohio/11SW225/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415853A/swine/Ohio/11SW224/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415846A/swine/Ohio/11SW221/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415838A/swine/Ohio/11SW220/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415830A/swine/Ohio/11SW218/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415812A/swine/Ohio/11SW216/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415804A/swine/Ohio/11SW215/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415796A/swine/Ohio/11SW213/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415779A/swine/Ohio/11SW210/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415771A/swine/Ohio/11SW209/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415762A/swine/Ohio/11SW207/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415745A/swine/Ohio/11SW205/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415737A/swine/Ohio/11SW204/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415720A/swine/Ohio/11SW202/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415685A/swine/Ohio/11SW196/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415617A/swine/Ohio/11SW184/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415573A/swine/Ohio/11SW175/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415556A/swine/Ohio/11SW173/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415548A/swine/Ohio/11SW172/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415497A/swine/Ohio/11SW163/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415481A/swine/Ohio/11SW146/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415473A/swine/Ohio/11SW140/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415465A/swine/Ohio/11SW139/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415457A/swine/Ohio/11SW138/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415449A/swine/Ohio/11SW137/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415441A/swine/Ohio/11SW136/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415433A/swine/Ohio/11SW135/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415425A/swine/Ohio/11SW134/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415415A/swine/Ohio/11SW96/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415411A/swine/Ohio/11SW132/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415403A/swine/Ohio/11SW131/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415395A/swine/Ohio/11SW130/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415387A/swine/Ohio/11SW129/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415379A/swine/Ohio/11SW128/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415371A/swine/Ohio/11SW126/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415365A/swine/Ohio/11SW125/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415357A/swine/Ohio/11SW124/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415349A/swine/Ohio/11SW123/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415341A/swine/Ohio/11SW122/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415313A/swine/Ohio/11SW95/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415289A/swine/Ohio/11SW87/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415257A/swine/Ohio/11SW114/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415249A/swine/Ohio/11SW113/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415241A/swine/Ohio/11SW112/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415225A/swine/Ohio/11SW108/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408330A/swine/Indiana/A01432188/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI492408A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI472184A/swine/Iowa/A01432840/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI391438A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395929A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2468.20.000000e+001385/1410 (98%)EPI542445A/swine/Nebraska/A01476165/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397387A/Indiana/49/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397214A/Pennsylvania/17/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397212A/Indiana/115/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397124A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396245A/Indiana/125/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396229A/Indiana/147/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396222A/Indiana/57/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395942A/swine/Indiana/A00968373/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395893A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395269A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394076A/Wisconsin/27/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394068A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394065A/Indiana/60/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI392754A/Indiana/14/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI392710A/Indiana/60/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI392707A/Indiana/59/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388331A/Utah/10/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2464.60.000000e+001382/1406 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2462.70.000000e+001384/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI550081A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI546918A/swine/Indiana/13TOSU1054/2013 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI546892A/swine/Indiana/13TOSU1141/2013 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527842A/swine/Indiana/13TOSU1047/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527152A/swine/Indiana/13TOSU1048/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527135A/swine/Indiana/13TOSU1058/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527073A/swine/Indiana/13TOSU1045/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527050A/swine/Indiana/13TOSU1060/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527008A/swine/Indiana/13TOSU1056/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527002A/swine/Indiana/13TOSU1049/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI526977A/swine/Indiana/13TOSU1052/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI526940A/swine/Indiana/13TOSU1044/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI526912A/swine/Indiana/13TOSU1053/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI509743A/swine/Iowa/13H081/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI509722A/swine/Iowa/13H082/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI499923A/swine/Iowa/13H094/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI468208A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI468200A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI465419A/Indiana/17/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI460976A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI443111A/swine/Ohio/A01349495/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI443101A/swine/Ohio/A01349302/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI443098A/swine/Ohio/A01349305/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI426907A/swine/Iowa/A01432308/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI424075A/swine/Michigan/A01259003/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI414155A/swine/Iowa/A01244302/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI401677A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI399293A/swine/Minnesota/A01327922/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI397960A/Ohio/88/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI397509A/Indiana/90/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI396213A/Indiana/113/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI395734A/swine/Indiana/A01104030/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI395343A/Wisconsin/28/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI393915A/swine/Indiana/A00968380/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI383540A/swine/Minnesota/A01203517/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI401668A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 6 (NA)2459.00.000000e+001383/1409 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2457.20.000000e+001383/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2457.20.000000e+001383/1410 (98%)EPI465390A/Indiana/09/2013 (A/H3N2) segment 6 (NA)2457.20.000000e+001383/1410 (98%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI550067A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI549962A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528783A/swine/Indiana/A01260479/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528458A/swine/Indiana/13TOSU1143/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528455A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528426A/swine/Indiana/13TOSU1149/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528423A/swine/Indiana/13TOSU1144/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527994A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527945A/swine/Indiana/13TOSU1151/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527898A/swine/Indiana/13TOSU1145/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527846A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527158A/swine/Indiana/13TOSU1158/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527087A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527062A/swine/Indiana/13TOSU1160/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI492407A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001679/1702 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI392748A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397562A/Wisconsin/29/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001672/1702 (98%)EPI396200A/Ohio/79/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001672/1702 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446838A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443542A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443534A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443518A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443510A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI401687A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI401676A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI398040A/Ohio/57/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397555A/Ohio/86/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI396291A/Ohio/63/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397961A/Ohio/88/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397412A/Michigan/16/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395858A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395850A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393661A/Ohio/62/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393298A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI392735A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI392696A/Indiana/43/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI392693A/Indiana/38/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI388362A/Indiana/16/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI381427A/swine/Ohio/7/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI381424A/swine/Ohio/9/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI377542A/swine/Ohio/1/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI346440A/Iowa/08/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI346432A/Iowa/07/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI346424A/Iowa/09/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI342704A/Iowa/09/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI414156A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI397206A/Ohio/34/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI396277A/Indiana/135/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI395331A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI394060A/Indiana/38/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI392699A/Indiana/46/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI388290A/Indiana/17/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI342696A/Iowa/08/2011 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI446871A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001671/1703 (98%)EPI440751A/swine/Indiana/A01432492/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI426908A/swine/Iowa/A01432308/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI407279A/Minnesota/18/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI400095A/swine/Indiana/A00968390/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI398124A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397912A/Indiana/114/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397677A/Ohio/83/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397654A/Indiana/90/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397418A/Michigan/23/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397404A/Indiana/99/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397344A/Michigan/19/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397211A/Indiana/113/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI396239A/Indiana/103/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395956A/swine/Indiana/A00968379/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395948A/swine/Indiana/A00968376/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395940A/swine/Indiana/A00968373/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395932A/swine/Indiana/A00968370/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395740A/swine/Indiana/A00968386/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395251A/Indiana/152/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI394069A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI394063A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI378523A/Indiana/09/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI378515A/Indiana/07/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI378502A/Indiana/07/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI347607A/Iowa/08/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI347604A/Iowa/07/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI392705A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2963.10.000000e+001669/1702 (98%)EPI392684A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2963.10.000000e+001669/1702 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1700 (98%)EPI397204A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2961.30.000000e+001669/1702 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001670/1703 (98%)EPI509734A/swine/Iowa/13H075/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI499946A/swine/Iowa/13H087/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI493688A/swine/Iowa/13E045/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443109A/swine/Ohio/A01349495/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443106A/swine/Ohio/A01349485/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443099A/swine/Ohio/A01349302/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443096A/swine/Ohio/A01349305/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI427184A/swine/Indiana/A01260163/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI400101A/swine/Indiana/A00968397/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI397759A/Wisconsin/35/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI397106A/Indiana/115/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI397092A/Indiana/57/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI396246A/Indiana/125/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI396230A/Indiana/147/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395891A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395843A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001670/1703 (98%)EPI395732A/swine/Indiana/A01104030/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395725A/swine/Indiana/A01104029/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395351A/Michigan/20/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395335A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1702 (98%)EPI392708A/Indiana/59/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI391032A/swine/Iowa/A01202530/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI391031A/swine/Iowa/A01202573/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI391028A/swine/Iowa/A01202529/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369064A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369056A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369048A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369037A/swine/Illinois/A00857138a/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369022A/swine/Illinois/A00857300/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI317003A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1700 (98%)EPI392934A/Minnesota/11/2012 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI392711A/Indiana/60/2012 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI504870A/swine/Iowa/A01290867/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI492991A/swine/Iowa/A01394595/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI492391A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI482825A/Iowa/04/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI472195A/swine/Iowa/A01432817/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI472183A/swine/Iowa/A01432840/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI461014A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI460375A/swine/Indiana/A01260280/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI457281A/swine/Korea/CY02-08/2012 (A/H3N1) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI457163A/swine/Indiana/9622/2011 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI457109A/swine/Korea/CY02-07/2012 (A/H3N1) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI453566A/swine/Indiana/A01260230/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI446735A/swine/Ohio/A01349615/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI416854A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI406469A/swine/Indiana/A01260041/2012 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI391369A/swine/Iowa/A01202879/2011 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI391368A/swine/Iowa/A01202878/2011 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)

LOCUS KU160763 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU160763 VERSION KU160763.1 GI:960314871 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (17-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945939/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1757162" /segment="4" /country="USA: North Carolina" /collection_date="24-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83428.1" /db_xref="GI:960314872" /translation="MKTIIAFSCILCLIFAQKLPGGDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLVASSGNLEFTQESFNWTGIAQDGSSYACKRGSG NSFFSRLNWLYKLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDSDQTSLYVQASGKV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QNGKSSIMRSDAHIDECNSECITPNGSISNDKPFQNVNKITYGACPRYIKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDIWSYNAELLVALENQ HTIDLTDSEMNKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945939.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga ttttcgctca aaaacttccc 61 ggaggtgaca acagcatggc aacgctgtgc ctgggacacc atgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcatcaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttacta tgtaccagat 361 tatgccactc ttaggtcact agttgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggaattgc tcaagacgga tcaagctatg cctgcaaaag gggatctggt 481 aacagtttct ttagtagatt gaattggttg tataaattga attacaagta tccagaacag 541 aatgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acagtgacca aaccagccta tatgtccaag catcagggaa agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg gatctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccgggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aaatgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca tttccaatga caaacctttt caaaatgtga acaagatcac atatggagcc 961 tgtcccagat atattaaaca aaacaccctg aaattggcaa caggtatgcg gaatgtacca 1021 gagaaacaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatgatag acggttggta cggtttcagg catcagaatt ctgaaggcac agggcaagca 1141 gcagatctta aaagcactca agcagcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatatctg gtcttacaac 1321 gctgagcttc ttgtagccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 aacaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aatgcctgca tcggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa gggcaacatt 1681 aggtgcaaca tttgcatttg a

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI499985A/swine/North Carolina/A01394918/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI499701A/swine/North Carolina/A01290729/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI487964A/swine/North Carolina/A01290565/2013 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI502663A/swine/Illinois/A01290887/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI487213A/swine/North Carolina/A01290534/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531049A/swine/North Carolina/A01410511/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509545A/swine/North Carolina/A01410024/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509540A/swine/North Carolina/A01290805/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509529A/swine/North Carolina/A01290797/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI507277A/swine/North Carolina/A01409655/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI502715A/swine/North Carolina/A01290800/2013 (A/H1N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI623628A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531067A/swine/North Carolina/A01410520/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531058A/swine/North Carolina/A01410535/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531052A/swine/North Carolina/A01410554/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531046A/swine/North Carolina/A01475277/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531010A/swine/North Carolina/A01410555/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510222A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510180A/swine/North Carolina/A01410205/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI505101A/swine/North Carolina/A01290956/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499665A/swine/North Carolina/A01290725/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499656A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492427A/swine/North Carolina/A01290473/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492393A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531073A/swine/North Carolina/A01475272/2014 (A/H1N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI568694A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI530295A/swine/North Carolina/A01410422/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI508851A/swine/North Carolina/A01410136/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI499637A/swine/North Carolina/A01290636/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI467465A/swine/North Carolina/A01432952/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI542513A/swine/North Carolina/A01476095/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI532396A/swine/North Carolina/A01410625/2014 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI531079A/swine/North Carolina/A01410533/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI531007A/swine/North Carolina/A01475257/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI531001A/swine/North Carolina/A01475256/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI530317A/swine/North Carolina/A01410329/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI510231A/swine/North Carolina/A01409950/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI508877A/swine/North Carolina/A01410180/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI504902A/swine/Illinois/A01411204/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI502700A/swine/North Carolina/A01290857/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI502651A/swine/North Carolina/A01290856/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI489709A/swine/South Carolina/A01394262/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487968A/swine/North Carolina/A01291004/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI463707A/swine/North Carolina/A01432766/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI647515A/swine/North Carolina/A02034477/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI645054A/swine/Illinois/A02090072/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI641468A/swine/Illinois/A01820879/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI621368A/swine/Illinois/A01820513/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI615355A/swine/Illinois/A01820485/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600454A/swine/North Carolina/A01476924/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600427A/swine/North Carolina/A01476896/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600358A/swine/North Carolina/A01476968/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600352A/swine/North Carolina/A01476902/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI597648A/swine/North Carolina/A01478870/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI586022A/swine/North Carolina/A01555546/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI559565A/swine/North Carolina/A01476557/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI559559A/swine/North Carolina/A01478107/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI558830A/swine/North Carolina/A01476722/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557793A/swine/North Carolina/A01476778/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557792A/swine/North Carolina/A01476736/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557791A/swine/North Carolina/A01476738/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557789A/swine/North Carolina/A01476775/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545821A/swine/North Carolina/A01476359/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI532369A/swine/North Carolina/A01410640/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI438228A/swine/Indiana/A01260209/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI542522A/swine/North Carolina/A01477162/2014 (A/H0) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI672971A/swine/North Carolina/A01945307/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI672959A/swine/North Carolina/A01945329/2015 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI672860A/swine/Illinois/A02090702/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI669147A/swine/North Carolina/A01770469/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI663354A/swine/North Carolina/A02025520/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI663315A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI653909A/swine/North Carolina/A02034933/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI653881A/swine/North Carolina/A02025523/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI647586A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI612564A/swine/North Carolina/A01554473/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI597672A/swine/North Carolina/A01476862/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI597645A/swine/North Carolina/A01476810/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI586055A/swine/North Carolina/A01555549/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI584851A/swine/Nebraska/A01489870/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI584830A/swine/Nebraska/A01489868/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI584810A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI573008A/swine/North Carolina/A01840074/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI568715A/swine/North Carolina/A01555137/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI559598A/swine/North Carolina/A01477720/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI559589A/swine/North Carolina/A01476564/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI545845A/swine/North Carolina/A01476462/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI542516A/swine/North Carolina/A01411902/2014 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI539063A/swine/Nebraska/A01501767/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI532390A/swine/Illinois/A01411761/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI526872A/swine/Minnesota/A01480518/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI505095A/swine/Nebraska/A01409647/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI501539A/swine/South Dakota/A01366063/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI492657A/swine/Nebraska/A01394342/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI467890A/swine/Nebraska/A01397576/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401625A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI502568A/swine/Nebraska/A01395675/2013 (A/H3N2) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI673003A/swine/North Carolina/120138/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI669232A/swine/North Carolina/A02025765/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI653895A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI612561A/swine/North Carolina/A02076144/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI596341A/swine/North Carolina/A01841556/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI596335A/swine/North Carolina/A01841555/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI593903A/swine/North Carolina/A01840366/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI586129A/swine/North Carolina/A01555663/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI573798A/swine/North Carolina/A01840320/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI568716A/swine/North Carolina/A01555212/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI568693A/swine/North Carolina/A01840329/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI560137A/swine/Nebraska/A01565950/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI558833A/swine/North Carolina/A01476714/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI548246A/swine/North Carolina/A01476535/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI531013A/swine/North Carolina/A01475255/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509759A/swine/Minnesota/A01366992/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI502690A/swine/North Carolina/A01290799/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI499988A/swine/Nebraska/A01394567/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI487955A/swine/Indiana/A01260366/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI476530A/swine/Illinois/A01398587/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2540.30.000000e+001398/1410 (99%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI623627A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001395/1411 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI672888A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528783A/swine/Indiana/A01260479/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2508.90.000000e+001390/1406 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397387A/Indiana/49/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397214A/Pennsylvania/17/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397212A/Indiana/115/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397124A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396245A/Indiana/125/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396229A/Indiana/147/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396222A/Indiana/57/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395942A/swine/Indiana/A00968373/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395929A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395893A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395269A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394076A/Wisconsin/27/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394068A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3094.30.000000e+001692/1701 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1701 (99%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3062.90.000000e+001684/1698 (99%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1701 (99%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3051.80.000000e+001684/1701 (99%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3051.80.000000e+001683/1699 (99%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001683/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001681/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001681/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI671792A/swine/Illinois/A01857433/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI645058A/swine/Indiana/A01260926/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)3007.50.000000e+001675/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)

LOCUS KU160678 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU160678 VERSION KU160678.1 GI:960314328 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (17-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945823/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1757159" /segment="4" /country="USA: North Carolina" /collection_date="23-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83317.1" /db_xref="GI:960314329" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQNSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACKRGSV KSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGESSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKSVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945823.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 aattcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcaaaag gggttctgtt 481 aaaagtttct ttagtagatt gaattggtta tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtggggaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa atttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatgga 1501 acctatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaagt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI672889A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI669246A/swine/North Carolina/A02025869/2015 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI673003A/swine/North Carolina/120138/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669232A/swine/North Carolina/A02025765/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI593903A/swine/North Carolina/A01840366/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586129A/swine/North Carolina/A01555663/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573798A/swine/North Carolina/A01840320/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568716A/swine/North Carolina/A01555212/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI558833A/swine/North Carolina/A01476714/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI548246A/swine/North Carolina/A01476535/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI600375A/swine/North Carolina/A01476945/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI596359A/swine/North Carolina/A01841422/2015 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI586126A/swine/North Carolina/A01555658/2015 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI663345A/swine/North Carolina/A01769148/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI653878A/swine/North Carolina/A02035922/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI641842A/swine/Illinois/A02024782/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI641825A/swine/Illinois/A02024781/2015 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620551A/swine/North Carolina/A02077383/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669165A/swine/North Carolina/A02025672/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI669159A/swine/North Carolina/A02025667/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI641627A/swine/Illinois/A02090002/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI590786A/swine/Iowa/A02076105/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542513A/swine/North Carolina/A01476095/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531079A/swine/North Carolina/A01410533/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531007A/swine/North Carolina/A01475257/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531001A/swine/North Carolina/A01475256/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530317A/swine/North Carolina/A01410329/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502700A/swine/North Carolina/A01290857/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502651A/swine/North Carolina/A01290856/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI489709A/swine/South Carolina/A01394262/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI487968A/swine/North Carolina/A01291004/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI647515A/swine/North Carolina/A02034477/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI645054A/swine/Illinois/A02090072/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI641468A/swine/Illinois/A01820879/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI621368A/swine/Illinois/A01820513/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI620545A/swine/North Carolina/A02076661/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI615355A/swine/Illinois/A01820485/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600454A/swine/North Carolina/A01476924/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600427A/swine/North Carolina/A01476896/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600358A/swine/North Carolina/A01476968/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600352A/swine/North Carolina/A01476902/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI597648A/swine/North Carolina/A01478870/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI586022A/swine/North Carolina/A01555546/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559565A/swine/North Carolina/A01476557/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559559A/swine/North Carolina/A01478107/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557793A/swine/North Carolina/A01476778/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557792A/swine/North Carolina/A01476736/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557791A/swine/North Carolina/A01476738/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557789A/swine/North Carolina/A01476775/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI545821A/swine/North Carolina/A01476359/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI532369A/swine/North Carolina/A01410640/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542522A/swine/North Carolina/A01477162/2014 (A/H0) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI672971A/swine/North Carolina/A01945307/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI672959A/swine/North Carolina/A01945329/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI672860A/swine/Illinois/A02090702/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI669147A/swine/North Carolina/A01770469/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI663354A/swine/North Carolina/A02025520/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI653881A/swine/North Carolina/A02025523/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612564A/swine/North Carolina/A01554473/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI597672A/swine/North Carolina/A01476862/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI597645A/swine/North Carolina/A01476810/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586055A/swine/North Carolina/A01555549/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584810A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573008A/swine/North Carolina/A01840074/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI568715A/swine/North Carolina/A01555137/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI559598A/swine/North Carolina/A01477720/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI559589A/swine/North Carolina/A01476564/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI545845A/swine/North Carolina/A01476462/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI542516A/swine/North Carolina/A01411902/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531046A/swine/North Carolina/A01475277/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510222A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499656A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI669214A/swine/North Carolina/A01857099/2015 (A/H1N2) segment 7 (MP)1764.70.000000e+00972/982 (98%)EPI612561A/swine/North Carolina/A02076144/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI596341A/swine/North Carolina/A01841556/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI596335A/swine/North Carolina/A01841555/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI568693A/swine/North Carolina/A01840329/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI531013A/swine/North Carolina/A01475255/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00974/983 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI467465A/swine/North Carolina/A01432952/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI502715A/swine/North Carolina/A01290800/2013 (A/H1N2) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI672916A/swine/North Carolina/A01945079/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI672910A/swine/North Carolina/A01945113/2015 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI672901A/swine/North Carolina/A01945109/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI499665A/swine/North Carolina/A01290725/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492427A/swine/North Carolina/A01290473/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492393A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487213A/swine/North Carolina/A01290534/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI653909A/swine/North Carolina/A02034933/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600460A/swine/North Carolina/A01476958/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI597633A/swine/North Carolina/A01476843/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI559580A/swine/North Carolina/A01477675/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI559556A/swine/North Carolina/A01476569/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI542455A/swine/North Carolina/A01477163/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI532396A/swine/North Carolina/A01410625/2014 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI531049A/swine/North Carolina/A01410511/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509545A/swine/North Carolina/A01410024/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509540A/swine/North Carolina/A01290805/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509529A/swine/North Carolina/A01290797/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI508851A/swine/North Carolina/A01410136/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI507277A/swine/North Carolina/A01409655/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI499637A/swine/North Carolina/A01290636/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI669150A/swine/North Carolina/A02025647/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI573044A/swine/North Carolina/A01477985/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI548264A/swine/North Carolina/A01478067/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI548255A/swine/North Carolina/A01478068/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI548252A/swine/North Carolina/A01476484/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI531067A/swine/North Carolina/A01410520/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531058A/swine/North Carolina/A01410535/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531052A/swine/North Carolina/A01410554/2014 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531010A/swine/North Carolina/A01410555/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI510231A/swine/North Carolina/A01409950/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI510180A/swine/North Carolina/A01410205/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI508877A/swine/North Carolina/A01410180/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI505101A/swine/North Carolina/A01290956/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI504902A/swine/Illinois/A01411204/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI499985A/swine/North Carolina/A01394918/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI499701A/swine/North Carolina/A01290729/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI487964A/swine/North Carolina/A01290565/2013 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI463707A/swine/North Carolina/A01432766/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531073A/swine/North Carolina/A01475272/2014 (A/H1N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI672919A/swine/North Carolina/A01795104/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI672895A/swine/North Carolina/A01945127/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI568694A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI559523A/swine/North Carolina/A01476677/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00970/983 (98%)EPI530295A/swine/North Carolina/A01410422/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI502663A/swine/Illinois/A01290887/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI388330A/Utah/10/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI663315A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI647586A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI558830A/swine/North Carolina/A01476722/2014 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI468629A/swine/Maryland/A01319694/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI467729A/swine/Ohio/A01351710/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI467726A/swine/Ohio/A01351683/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401625A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1735.10.000000e+00967/981 (98%)EPI433327A/swine/Wyoming/A01444566/2013 (A/H3N2) segment 7 (MP)1733.30.000000e+00967/982 (98%)EPI653895A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)