niman

MethodsThe study was carried out on seven consecutive days in January 2015. Nasal swabs and blood were collected from camels shortly after slaughter at the abattoir in Kano, Nigeria. Some of the animals slaughtered at this abattoir originate from northern Nigeria, as well as neighbouring African countries including Chad, Libya, Mali, Niger and Sudan. Nasal swabs were collected in RNALater (Ambion) or in virus transport medium and stored at -80 °C. Blood samples were collected and serum separated. The age of the sampled camels was assessed by dental examination. Samples were shipped to the laboratory at The University of Hong Kong on dry ice for laboratory investigation. Total nucleic acid was extracted from swab samples using EasyMag (Biomerieux), and tested for the presence of MERS-CoV RNA by upstream of the Envelope gene (UpE) reverse transcription-quantitative polymerase chain reaction (RT-qPCR) hydrolysis probe assay. All positive specimens were confirmed by a second RT-qPCR assay targeting the open reading frame (ORF)1a region of the genome [6]. The S2 region of the positive samples were amplified and sequenced for phylogenetic characterisation [10]. The full spike gene and 5kb of the ORF1b region of one virus were sequenced for more detailed analysis. Sera were screened at a dilution of 1:20 for the detection of MERS-CoV antibody using a validated MERS-spike pseudoparticle neutralisation test (ppNT) as previously described [5].

IntroductionMiddle East respiratory syndrome coronavirus (MERS-CoV) is a novel lineage C betacoronavirus that can cause an acute viral respiratory disease in humans. As of 13 November 2015, there were 1,618 laboratory-confirmed cases of MERS reported to the World Health Organization (WHO), associated with 579 deaths [1,2]. Human disease is zoonotic in origin, although clusters of human-to-human transmission have been reported, especially within healthcare or family settings [1]. Dromedary camels in the Middle East have a high seroprevalence for MERS-CoV and MERS-CoV RNA has been consistently detected in these animals, especially in settings such as camel abattoirs, where camels from multiple origins are assembled. Camels are thus identified as a potential source of zoonotic MERS [3-6]. More than 60% of the global population of dromedary camels is distributed in African countries. Some of these countries are important camel exporters to the Arabian Peninsula [7]. MERS-CoV antibodies were also found with high prevalence in dromedary camels in these African countries with positive rates higher than 80% for the animals in Egypt, Ethiopia, Nigeria and Sudan, and of 30 to 54% in Tunisia [8]. However, zoonotic human disease has so far been reported only from countries in the Middle-East. The reason for the absence of zoonotic disease in Africa is unclear. The genetic diversity of the virus in Africa is poorly defined. The only reports of genetic sequences from Africa have been those from viruses in Egypt and these were genetically distinct from those currently causing human disease in the Middle East [6]. However, phenotypic characterisation of these viruses revealed they have capacity to infect tissues of the human respiratory tract [9]. There is a need to better understand the ecology of MERS-CoV within Africa and the viral genetic diversity within this region. We report detection rates of MERS-CoV in dromedary camels in the abattoir in Kano, Nigeria, where around 55 camels are slaughtered per day, making it the largest camel abattoir in that country. Viral sequences derived from nasal swabs of these animals are also phylogenetically analysed.

Evidence of current and past Middle East respiratory syndrome coronavirus (MERS-CoV) infection in dromedary camels slaughtered at an abattoir in Kano, Nigeria in January 2015, was sought by reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and serology. MERS-CoV RNA was detected in 14 (11%) of 132 nasal swabs and antibody in 126 (96%) of 131 serum samples. Phylogenetic analyses demonstrate that the viruses in Nigeria are genetically distinct from those reported in the Arabian peninsula.

Eurosurveillance, Volume 20, Issue 49, 10 December 2015Rapid communication MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS (MERS-COV) IN DROMEDARY CAMELS IN NIGERIA, 2015 DK Chu 1 2 , JO Oladipo 1 2 , RA Perera 2 , SA Kuranga 3 , SM Chan 2 , LL Poon 2 4 , M Peiris 2 4+ Author affiliations 1. These authors contributed equally to the work 2. School of Public Health, The University of Hong Kong, Hong Kong SAR 3. University of Ilorin, Ilorin, Nigeria 4. Pasteur Research Pole, The University of Hong Kong, Hong Kong SAR Correspondence: Malik Peiris ([email protected]) Citation style for this article: Chu D, Oladipo J, Perera R, Kuranga S, Chan S, Poon L, Peiris M. Middle East respiratory syndrome coronavirus (MERS-CoV) in dromedary camels in Nigeria, 2015. Euro Surveill. 2015;20(49):pii=30086. DOI: http://dx.doi.org/10.2807/1560-7917.ES.2015.20.49.30086 Received:10 November 2015; Accepted:10 December 2015

MERS confirmed, including sequences, in Camels in Nigeria - 2015 - Eurosurveillance. http://eurosurveillance.org/ViewArticle.aspx?ArticleId=21327

The governments of Canada and B.C. are investing $300,000 to strengthen the surveillance, early detection, and response measures to avian flu. The funding will be used to enhance the resources at the Ministry of Agriculture’s Animal Health Centre in Abbotsford with specialized equipment to diagnose samples collected in the Ministry’s avian flu surveillance efforts. Ministry of Agriculture staff began a pilot surveillance project that collected sediment samples at ponds and wetlands used by wild waterfowl following the December 2014 avian flu outbreak in the Fraser Valley. A research group has worked at developing cutting-edge technological advances to be able to test the samples collected from the pilot project for the presence of avian flu strains. Funds will be used to transfer this new technology to the Animal Health Centre. As the pilot project evolves into ongoing surveillance, the ability to diagnose the samples quickly at the Animal Health Centre will greatly enhance early detection efforts. The Ministry of Agriculture will also be targeting owners of small poultry flocks by hosting workshops in different regions focusing on poultry health, and the sharing of information and resources such as the Small Flock Poultry Health Manual at:http://www.agf.gov.bc.ca/ahc/poultry/small_flock_manual.pdfAdditional bio-security planning information for small flock owners is at:www.protectmyflock.ca/pmf/wp-content/uploads/2014/12/Biosecurity-Guide-for-Non-Supply-Managed-Poultry1.pdf In addition, funding is being provided to support a rapid response to any future outbreaks by having mobile equipment to help any infected poultry premises with the humane depopulation of infected bird populations within the province at all times and to train more responders in its use. The $300,000 is provided through the Biosecurity and Surveillance Program under Growing Forward 2, a five-year agreement launched in 2013 that provides a $3-billion, federal-provincial-territorial government investment in innovation, competitiveness and market development. Information on the Biosecurity and Surveillance Program is at:http://www2.gov.bc.ca/gov/content/industry/agriculture-seafood/programs/growing-forward-2/biosecurity-surveillance Learn More: Ministry of Agriculture Animal Health Centre Information:https://www.newsroom.gov.bc.ca/2014/03/bc-animal-health-centre-expertise-endorsed.html 2014 Fraser Valley Avian Flu Response: http://www.inspection.gc.ca/animals/terrestrial-animals/diseases/reportable/ai/2014-2015-ai-investigation-in-bc/eng/1418491040802/1418491095666

Canada steps up avian flu surveillance https://news.gov.bc.ca/releases/2015AGRI0077-002139

http://rense.gsradio.net:8080/rense/special/rense_121715_hr1.mp3

Novel Influenza A Virus:One human infection with a novel influenza A virus was reported by the state of Minnesota. The person was infected with an influenza A (H1N1) variant (H1N1v) virus. The patient was not hospitalized and has fully recovered from their illness. The patient lived and worked in an area near where swine were housed but no direct contact with swine was reported in the week prior to illness onset. No ongoing human-to-human transmission has been identified. Early identification and investigation of human infections with novel influenza A viruses are critical so that the risk of infection can be more fully appreciated and appropriate public health measures can be taken. Additional information on influenza in swine, variant influenza infection in humans, and strategies to interact safely with swine can be found at http://www.cdc.gov/flu/swineflu/index.htm. http://www.cdc.gov/flu/weekly/

Week 49 Flu View cites the detection of H1N1v in case in Minnesota with no documented swine contact.

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(99%)EPI669637A/swine/Ohio/14TOSU0422/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669633A/swine/Ohio/14TOSU0463/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669624A/swine/Ohio/14TOSU21811/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669608A/swine/Ohio/14TOSU0563/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669591A/swine/Indiana/14TOSU0011/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669541A/swine/Ohio/14TOSU0435/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669531A/swine/Ohio/14TOSU21800/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669469A/swine/Indiana/14TOSU0343/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669423A/swine/Ohio/14TOSU21805/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669419A/swine/Ohio/14TOSU21815/2014 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669407A/swine/Indiana/14TOSU0235/2014 (A/H3N2) segment 7 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(A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545812A/swine/Indiana/A01476391/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545372A/swine/Iowa/A01476238/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545270A/swine/Minnesota/A01565076/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545142A/swine/Indiana/A01260591/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI544948A/swine/Minnesota/A01503773/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI544945A/swine/Minnesota/A01503777/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI544942A/swine/Minnesota/A01503779/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI544810A/swine/Minnesota/A01503781/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI620592A/swine/Illinois/A02076652/2015 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI600463A/swine/Illinois/A01555038/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 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(MP)1781.30.000000e+00976/982 (99%)EPI612503A/swine/Minnesota/A01847477/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI612494A/swine/Minnesota/A01847455/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 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segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI461420A/swine/Ohio/11SW149/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI461386A/swine/Ohio/11SW238/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459607A/swine/Ohio/11SW144/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459599A/swine/Ohio/11SW121/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459591A/swine/Ohio/11SW127/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459573A/swine/Ohio/11SW230/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459535A/swine/Ohio/11SW349/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459520A/swine/Ohio/11SW223/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459499A/swine/Ohio/11SW111/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459488A/swine/Ohio/11SW133/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459466A/swine/Ohio/11SW344/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457158A/swine/Korea/CY03-19/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457150A/swine/Korea/CY03-18/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457142A/swine/Korea/CY03-17/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457134A/swine/Korea/CY03-16/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457126A/swine/Korea/CY03-15/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI457118A/swine/Korea/CY03-14/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI453430A/swine/Korea/D79/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI441649A/swine/Iowa/A01445788/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433310A/swine/Iowa/A01444786/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415974A/swine/Ohio/11SW232/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415966A/swine/Ohio/11SW347/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415958A/swine/Ohio/11SW240/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415950A/swine/Ohio/11SW239/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415942A/swine/Ohio/11SW237/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415926A/swine/Ohio/11SW235/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415918A/swine/Ohio/11SW234/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415904A/swine/Ohio/11SW231/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415896A/swine/Ohio/11SW229/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415888A/swine/Ohio/11SW228/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415880A/swine/Ohio/11SW227/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415871A/swine/Ohio/11SW226/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415862A/swine/Ohio/11SW225/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415853A/swine/Ohio/11SW224/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415846A/swine/Ohio/11SW221/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415838A/swine/Ohio/11SW220/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415830A/swine/Ohio/11SW218/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415812A/swine/Ohio/11SW216/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415804A/swine/Ohio/11SW215/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415796A/swine/Ohio/11SW213/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415779A/swine/Ohio/11SW210/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415771A/swine/Ohio/11SW209/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415762A/swine/Ohio/11SW207/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415745A/swine/Ohio/11SW205/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415737A/swine/Ohio/11SW204/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415720A/swine/Ohio/11SW202/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415685A/swine/Ohio/11SW196/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415617A/swine/Ohio/11SW184/2011 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415573A/swine/Ohio/11SW175/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415556A/swine/Ohio/11SW173/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415548A/swine/Ohio/11SW172/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415497A/swine/Ohio/11SW163/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415481A/swine/Ohio/11SW146/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415473A/swine/Ohio/11SW140/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415465A/swine/Ohio/11SW139/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415457A/swine/Ohio/11SW138/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415449A/swine/Ohio/11SW137/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415441A/swine/Ohio/11SW136/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415433A/swine/Ohio/11SW135/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415425A/swine/Ohio/11SW134/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415415A/swine/Ohio/11SW96/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415411A/swine/Ohio/11SW132/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415403A/swine/Ohio/11SW131/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415395A/swine/Ohio/11SW130/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415387A/swine/Ohio/11SW129/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415379A/swine/Ohio/11SW128/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415371A/swine/Ohio/11SW126/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415365A/swine/Ohio/11SW125/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415357A/swine/Ohio/11SW124/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415349A/swine/Ohio/11SW123/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415341A/swine/Ohio/11SW122/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415313A/swine/Ohio/11SW95/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415289A/swine/Ohio/11SW87/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415257A/swine/Ohio/11SW114/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415249A/swine/Ohio/11SW113/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415241A/swine/Ohio/11SW112/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI415225A/swine/Ohio/11SW108/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI408330A/swine/Indiana/A01432188/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI406668A/swine/Iowa/A01203977/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397414A/Michigan/23/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397342A/Michigan/19/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395346A/Michigan/20/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391144A/swine/Indiana/A01202621/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391142A/swine/Indiana/A01202632/2011 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI390882A/swine/Michigan/A01203374/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI390881A/swine/Indiana/A01203372/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI390671A/swine/Indiana/A01243255/2012 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI388330A/Utah/10/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433327A/swine/Wyoming/A01444566/2013 (A/H3N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI620604A/swine/Iowa/A02076786/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584851A/swine/Nebraska/A01489870/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584830A/swine/Nebraska/A01489868/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI541963A/Ohio/4319/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00964/967 (99%)EPI539063A/swine/Nebraska/A01501767/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI532390A/swine/Illinois/A01411761/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI527873A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI527116A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI526872A/swine/Minnesota/A01480518/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI505095A/swine/Nebraska/A01409647/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI501539A/swine/South Dakota/A01366063/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499646A/swine/Iowa/A01290671/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492657A/swine/Nebraska/A01394342/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492356A/swine/Indiana/A00968365/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487955A/swine/Indiana/A01260366/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI476530A/swine/Illinois/A01398587/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI472154A/swine/Wyoming/A01397389/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI467890A/swine/Nebraska/A01397576/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI461446A/swine/Wyoming/A01381202/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI453429A/swine/Korea/A18/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451185A/swine/Pennsylvania/A01432652/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451178A/swine/Wyoming/A01379327/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451175A/swine/Wyoming/A01379354/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI438228A/swine/Indiana/A01260209/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427201A/swine/Indiana/A01260183/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI416865A/swine/Iowa/A01432207/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI415934A/swine/Ohio/11SW236/2011 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI415703A/swine/Ohio/11SW200/2011 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401145A/swine/North Carolina/A01270509/2012 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI399472A/swine/North Carolina/A01300820/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI620636A/swine/Iowa/A02076564/2015 (A/H1N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI623673A/swine/Iowa/A02076596/2015 (A/H1N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI600393A/swine/Iowa/A01555010/2014 (A/H1N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI573576A/swine/Iowa/A01469372/2014 (A/H1N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542540A/swine/Iowa/A01476152/2014 (A/H1N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI672955A/swine/Iowa/A01795227/2015 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI544936A/swine/Iowa/13H091/2013 (A/H0) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI492376A/swine/Iowa/A01399987/2013 (A/H1N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI489714A/swine/Minnesota/A01394042/2013 (A/H1N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI574168A/swine/Iowa/A01469493/2015 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI528420A/swine/Texas/13TOSU6273/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI526954A/swine/Texas/13TOSU6276/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506609A/swine/Nebraska/A01490415/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506603A/swine/Nebraska/A01490535/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506600A/swine/Nebraska/A01490456/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506597A/swine/Nebraska/A01490540/2014 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI505004A/swine/Nebraska/A01490219/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI499931A/swine/Iowa/13H072/2013 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI506272A/swine/Minnesota/A01395979/2013 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI506263A/swine/Minnesota/A01395969/2013 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI499765A/swine/Iowa/A01290752/2013 (A/H0) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI460086A/swine/Minnesota/A01380666/2013 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI558872A/swine/Illinois/A01477750/2014 (A/H0) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI371322A/swine/Minnesota/A01116842/2011 (A/H1N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI476523A/swine/Minnesota/A01398642/2013 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI384480A/swine/Minnesota/A01116840/2011 (A/H1N2) segment 6 (NA)2499.60.000000e+001389/1407 (98%)EPI669317A/swine/Indiana/14TOSU0028/2014 (A/H1N2) segment 6 (NA)2479.30.000000e+001386/1408 (98%)EPI669300A/swine/Indiana/14TOSU0032/2014 (A/H1N2) segment 6 (NA)2479.30.000000e+001386/1408 (98%)EPI641453A/swine/Minnesota/A01823149/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI621571A/swine/Iowa/A01822306/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI621565A/swine/Iowa/A01822318/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI621562A/swine/Iowa/A01822297/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI620482A/swine/Minnesota/A01847873/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI600447A/swine/Iowa/A01476909/2014 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI669698A/swine/Ohio/14TOSU23771/2014 (A/H1N2) segment 6 (NA)2473.80.000000e+001385/1408 (98%)EPI669422A/swine/Ohio/14TOSU23764/2014 (A/H1N2) segment 6 (NA)2473.80.000000e+001385/1408 (98%)EPI546931A/swine/Indiana/A01260587/2014 (A/H1N2) segment 6 (NA)2473.80.000000e+001385/1408 (98%)EPI586051A/swine/Nebraska/A01555575/2015 (A/H1N2) segment 6 (NA)2471.90.000000e+001387/1411 (98%)EPI584797A/swine/Iowa/A01840985/2015 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI623642A/swine/Iowa/A02077617/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI612569A/swine/Iowa/A02076301/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI584806A/swine/Iowa/A01840987/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI371332A/swine/Minnesota/A01201294/2011 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI341743A/swine/Iowa/A01202063/2011 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI338587A/swine/Iowa/A01049863/2011 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI371310A/swine/Minnesota/A01047911/2010 (A/H1N2) segment 6 (NA)2446.10.000000e+001381/1410 (97%)EPI663372A/swine/Iowa/A02025591/2015 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI559398A/swine/Indiana/28-0202/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI559388A/swine/Indiana/28-0210/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI559298A/swine/Indiana/28-0223/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI399610A/swine/Pennsylvania/A01076779/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI399563A/swine/Pennsylvania/A01076777/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391079A/swine/Iowa/A01202576/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391073A/swine/Minnesota/A01202471/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391052A/swine/Iowa/A01202087/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI390950A/swine/Ohio/A01049357/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI384281A/swine/Minnesota/A01047910/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001379/1407 (98%)EPI384278A/swine/Minnesota/A01047909/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001379/1407 (98%)EPI371331A/swine/Minnesota/A01201102/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI369160A/swine/Illinois/A01134703/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI369159A/swine/Illinois/A01134654/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI369156A/swine/Illinois/A01134482/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI347612A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI338586A/swine/Iowa/A01049864/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI338584A/swine/Iillinois/A01049872/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI338568A/swine/Minnesota/A01049956/2011 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI317022A/swine/Iowa/A01049071/2010 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI314799A/swine/Pennsylvania/602170-3/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI314797A/swine/Pennsylvania/602170-1/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI291871A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI291869A/Pennsylvania/14/2010 (A/H3N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI391191A/swine/Iowa/A01202677/2011 (A/H1N2) segment 6 (NA)2440.50.000000e+001380/1410 (97%)EPI367693A/swine/Minnesota/A01047500/2010 (A/H1N2) segment 6 (NA)2440.50.000000e+001380/1410 (97%)EPI653871A/swine/Illinois/A00857134/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI653860A/swine/Illinois/A00857131/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI653771A/swine/Illinois/A00857129/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI584491A/swine/Michigan/A01202035/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI559340A/swine/Indiana/28-0410/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI559314A/swine/Indiana/28-0415/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI559310A/swine/Indiana/28-0419/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI415678A/swine/Ohio/11SW195/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI415266A/swine/Ohio/11SW115/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI399584A/swine/Minnesota/A01327667/2012 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391418A/swine/Iowa/A01202879/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391384A/swine/Iowa/A01202878/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391128A/swine/Iowa/A01202639/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI391122A/swine/Iowa/A01202529/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI390783A/swine/Minnesota/A01076123/2010 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI390782A/swine/Minnesota/A01076122/2010 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI384578A/swine/Illinois/A01116719/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI384530A/swine/Illinois/A01134851/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001378/1407 (97%)EPI371325A/swine/Minnesota/A01134248/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI371324A/swine/Minnesota/A01134236/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI369050A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI369039A/swine/Illinois/A00857138a/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI369024A/swine/Illinois/A00857300/2011 (A/H0) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI367809A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI351656A/swine/Iowa/A01202640/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI341750A/swine/Michigan/A01202036/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI341749A/swine/Michigan/A01202037/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI338567A/swine/Indiana/A01049964/2011 (A/H1N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI338447A/swine/Indiana/A01049653/2011 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI399602A/swine/Illinois/A01240908/2012 (A/H3N2) segment 6 (NA)2435.00.000000e+001379/1410 (97%)EPI615608A/swine/Illinois/A01047046/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI615557A/swine/Illinois/A01047045/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI559278A/swine/Indiana/28-0403/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI489142A/swine/North Carolina/SG1391/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI461426A/swine/Ohio/11SW233/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI461419A/swine/Ohio/11SW149/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI461393A/swine/Ohio/11SW208/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459606A/swine/Ohio/11SW144/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459598A/swine/Ohio/11SW121/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459590A/swine/Ohio/11SW127/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459534A/swine/Ohio/11SW349/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459495A/swine/Ohio/11SW162/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459487A/swine/Ohio/11SW133/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI459465A/swine/Ohio/11SW344/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415967A/swine/Ohio/11SW347/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415831A/swine/Ohio/11SW218/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415822A/swine/Ohio/11SW217/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415797A/swine/Ohio/11SW213/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415772A/swine/Ohio/11SW209/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415713A/swine/Ohio/11SW201/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415652A/swine/Ohio/11SW189/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415642A/swine/Ohio/11SW187/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415634A/swine/Ohio/11SW186/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415626A/swine/Ohio/11SW185/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415600A/swine/Ohio/11SW180/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415565A/swine/Ohio/11SW174/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415531A/swine/Ohio/11SW170/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415523A/swine/Ohio/11SW169/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415516A/swine/Ohio/11SW168/2011 (A/H0) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415506A/swine/Ohio/11SW166/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415490A/swine/Ohio/11SW161/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415482A/swine/Ohio/11SW146/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415474A/swine/Ohio/11SW140/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415466A/swine/Ohio/11SW139/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415458A/swine/Ohio/11SW138/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415450A/swine/Ohio/11SW137/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415442A/swine/Ohio/11SW136/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415434A/swine/Ohio/11SW135/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415426A/swine/Ohio/11SW134/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415412A/swine/Ohio/11SW132/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415404A/swine/Ohio/11SW131/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415396A/swine/Ohio/11SW130/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415388A/swine/Ohio/11SW129/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415380A/swine/Ohio/11SW128/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415372A/swine/Ohio/11SW126/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415366A/swine/Ohio/11SW125/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415358A/swine/Ohio/11SW124/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415350A/swine/Ohio/11SW123/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415342A/swine/Ohio/11SW122/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415290A/swine/Ohio/11SW87/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415274A/swine/Ohio/11SW118/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI415234A/swine/Ohio/11SW109/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI398914A/swine/Illinois/A01134651/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391426A/swine/Iowa/A01203126/2012 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391425A/swine/Iowa/A01203125/2012 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391124A/swine/Iowa/A01202573/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391090A/swine/Indiana/A01202632/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391089A/swine/Indiana/A01202631/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391074A/swine/Minnesota/A01202472/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI390951A/swine/Ohio/A01049382/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI384551A/swine/Illinois/A01134656/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384503A/swine/Minnesota/A01134235/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384500A/swine/Minnesota/A01134221/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384443A/swine/Minnesota/A01116288/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384415A/swine/Illinois/A01047397/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI384336A/swine/Minnesota/A01116364/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001377/1407 (97%)EPI371329A/swine/Minnesota/A01134593/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI371323A/swine/Minnesota/A01134226/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369161A/swine/Illinois/A01134715/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369158A/swine/Illinois/A01134653/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369066A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI369058A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367700A/swine/Illinois/A01047108/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367692A/swine/Illinois/A01047363/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367691A/swine/Illinois/A01047353/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367690A/swine/Illinois/A01047348/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367689A/swine/Illinois/A01047177/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367688A/swine/Illinois/A01047172/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367687A/swine/Illinois/A01047166/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367686A/swine/Illinois/A01047162/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367685A/swine/Illinois/A01047155/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367684A/swine/Illinois/A01047153/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367683A/swine/Illinois/A01047149/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367682A/swine/Illinois/A01047145/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367681A/swine/Illinois/A01047112/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367680A/swine/Illinois/A01047099/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367679A/swine/Illinois/A01047097/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367678A/swine/Illinois/A01047089/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367677A/swine/Illinois/A01047085/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367674A/swine/Illinois/A01047042/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367673A/swine/Illinois/A01047041/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367672A/swine/Illinois/A01047024/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI367671A/swine/Illinois/A01047020/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI344396A/Indiana/10/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI344388A/Indiana/10/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338597A/swine/Indiana/A01049744/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338596A/swine/Indiana/A01049745/2011 (A/H3N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338590A/swine/Indiana/A01049794/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338583A/swine/Iowa/A01049887/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338451A/swine/Iowa/A01049644/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI338449A/swine/Iowa/A01049646/2011 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI391051A/swine/Iowa/A01202086/2011 (A/H1N2) segment 6 (NA)2431.30.000000e+001378/1410 (97%)EPI384302A/swine/Minnesota/A01047499/2010 (A/H1N2) segment 6 (NA)2431.30.000000e+001376/1406 (97%)EPI341756A/swine/Iowa/A01049970/2011 (A/H1N2) segment 6 (NA)2431.30.000000e+001378/1410 (97%)EPI489072A/swine/Arkansas/SG1376/2011 (A/H1N2) segment 6 (NA)2429.50.000000e+001377/1408 (97%)EPI615601A/swine/Iowa/A01202444/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI615550A/swine/Illinois/A01047044/2010 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI506435A/swine/Indiana/A00968332/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI492955A/swine/Indiana/A00968349/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI489086A/swine/Arkansas/SG1378/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI461385A/swine/Ohio/11SW238/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI459572A/swine/Ohio/11SW230/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI459527A/swine/Ohio/11SW177/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI459519A/swine/Ohio/11SW223/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI457170A/swine/Ohio/11SW208/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI439894A/swine/Wyoming/A01445305/2013 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415959A/swine/Ohio/11SW240/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415951A/swine/Ohio/11SW239/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415943A/swine/Ohio/11SW237/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415935A/swine/Ohio/11SW236/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415927A/swine/Ohio/11SW235/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415919A/swine/Ohio/11SW234/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415911A/swine/Ohio/11SW232/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415905A/swine/Ohio/11SW231/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415897A/swine/Ohio/11SW229/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415889A/swine/Ohio/11SW228/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415881A/swine/Ohio/11SW227/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415872A/swine/Ohio/11SW226/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415863A/swine/Ohio/11SW225/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415854A/swine/Ohio/11SW224/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415847A/swine/Ohio/11SW221/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415839A/swine/Ohio/11SW220/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415813A/swine/Ohio/11SW216/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415805A/swine/Ohio/11SW215/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415788A/swine/Ohio/11SW211/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415780A/swine/Ohio/11SW210/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415746A/swine/Ohio/11SW205/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415738A/swine/Ohio/11SW204/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415721A/swine/Ohio/11SW202/2011 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415694A/swine/Ohio/11SW197/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415660A/swine/Ohio/11SW191/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415608A/swine/Ohio/11SW183/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415592A/swine/Ohio/11SW179/2011 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415584A/swine/Ohio/11SW178/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI415541A/swine/Ohio/11SW171/2011 (A/H0) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI399248A/swine/Illinois/A01327348/2012 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI399021A/swine/Illinois/A01241916/2012 (A/H3N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3105.30.000000e+001694/1701 (99%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3096.10.000000e+001692/1701 (99%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3096.10.000000e+001692/1701 (99%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001683/1702 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001680/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001676/1699 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001675/1698 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1701 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI317003A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI671792A/swine/Illinois/A01857433/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2990.80.000000e+001672/1699 (98%)EPI395331A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2990.80.000000e+001672/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2990.80.000000e+001672/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI645058A/swine/Indiana/A01260926/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI457163A/swine/Indiana/9622/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI414156A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)

LOCUS KU143683 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU143683 VERSION KU143683.1 GI:960313905 KEYWORDS . SOURCE Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (12-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Ohio/A01857766/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Ohio/A01857766/2015" /serotype="H3N2" /isolation_source="oral fluid" /host="swine" /db_xref="taxon:1755989" /segment="4" /country="USA: Ohio" /collection_date="14-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83309.1" /db_xref="GI:960313906" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDGFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRGSV NSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI LSGKSSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHHNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01857766.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctaccga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg gcttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tcgggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag gggttcagtt 481 aacagtttct ttagtagatt gaattggttg tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaggacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccgggaga catacttttg 781 attaatagca cagggaatct aattgcccct cggggttact tcaaaatact aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacacccta aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcacaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagctcc ttgttgccct ggagaaccaa catacaattg acctaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat tagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgtcgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA has released novel October 2015 H3N2v swine sequences with an H3 that matches 2012 cases and an N2 matching 2011 cases.

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1785.00.000000e+00976/981 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI467602A/swine/Iowa/A01244805/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI461427A/swine/Ohio/11SW233/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI461420A/swine/Ohio/11SW149/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI461386A/swine/Ohio/11SW238/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459607A/swine/Ohio/11SW144/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459599A/swine/Ohio/11SW121/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459591A/swine/Ohio/11SW127/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459573A/swine/Ohio/11SW230/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459535A/swine/Ohio/11SW349/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459520A/swine/Ohio/11SW223/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459499A/swine/Ohio/11SW111/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459488A/swine/Ohio/11SW133/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI459466A/swine/Ohio/11SW344/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457158A/swine/Korea/CY03-19/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457150A/swine/Korea/CY03-18/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457142A/swine/Korea/CY03-17/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457134A/swine/Korea/CY03-16/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457126A/swine/Korea/CY03-15/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI457118A/swine/Korea/CY03-14/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI453430A/swine/Korea/D79/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446730A/swine/Ohio/A01349559/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI441649A/swine/Iowa/A01445788/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI438206A/swine/Virginia/A01432419/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433310A/swine/Iowa/A01444786/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415974A/swine/Ohio/11SW232/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415966A/swine/Ohio/11SW347/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415958A/swine/Ohio/11SW240/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415950A/swine/Ohio/11SW239/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415942A/swine/Ohio/11SW237/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415926A/swine/Ohio/11SW235/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415918A/swine/Ohio/11SW234/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415904A/swine/Ohio/11SW231/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415896A/swine/Ohio/11SW229/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415888A/swine/Ohio/11SW228/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415880A/swine/Ohio/11SW227/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415871A/swine/Ohio/11SW226/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415862A/swine/Ohio/11SW225/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415853A/swine/Ohio/11SW224/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415846A/swine/Ohio/11SW221/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415838A/swine/Ohio/11SW220/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415830A/swine/Ohio/11SW218/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415812A/swine/Ohio/11SW216/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415804A/swine/Ohio/11SW215/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415796A/swine/Ohio/11SW213/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415779A/swine/Ohio/11SW210/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415771A/swine/Ohio/11SW209/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415762A/swine/Ohio/11SW207/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415745A/swine/Ohio/11SW205/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415737A/swine/Ohio/11SW204/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415720A/swine/Ohio/11SW202/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415685A/swine/Ohio/11SW196/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415617A/swine/Ohio/11SW184/2011 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415573A/swine/Ohio/11SW175/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415556A/swine/Ohio/11SW173/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415548A/swine/Ohio/11SW172/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415497A/swine/Ohio/11SW163/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415481A/swine/Ohio/11SW146/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415473A/swine/Ohio/11SW140/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415465A/swine/Ohio/11SW139/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415457A/swine/Ohio/11SW138/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415449A/swine/Ohio/11SW137/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415441A/swine/Ohio/11SW136/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415433A/swine/Ohio/11SW135/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415425A/swine/Ohio/11SW134/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415415A/swine/Ohio/11SW96/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415411A/swine/Ohio/11SW132/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415403A/swine/Ohio/11SW131/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415395A/swine/Ohio/11SW130/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415387A/swine/Ohio/11SW129/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415379A/swine/Ohio/11SW128/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415371A/swine/Ohio/11SW126/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415365A/swine/Ohio/11SW125/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415357A/swine/Ohio/11SW124/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415349A/swine/Ohio/11SW123/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415341A/swine/Ohio/11SW122/2011 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415313A/swine/Ohio/11SW95/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415289A/swine/Ohio/11SW87/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415257A/swine/Ohio/11SW114/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415249A/swine/Ohio/11SW113/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415241A/swine/Ohio/11SW112/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI415225A/swine/Ohio/11SW108/2011 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408330A/swine/Indiana/A01432188/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI492408A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI472184A/swine/Iowa/A01432840/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI391438A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395929A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2468.20.000000e+001385/1410 (98%)EPI542445A/swine/Nebraska/A01476165/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397387A/Indiana/49/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397214A/Pennsylvania/17/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397212A/Indiana/115/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397124A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396245A/Indiana/125/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396229A/Indiana/147/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396222A/Indiana/57/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395942A/swine/Indiana/A00968373/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395893A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395269A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394076A/Wisconsin/27/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394068A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394065A/Indiana/60/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI392754A/Indiana/14/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI392710A/Indiana/60/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI392707A/Indiana/59/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388331A/Utah/10/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2464.60.000000e+001382/1406 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2462.70.000000e+001384/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI550081A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI546918A/swine/Indiana/13TOSU1054/2013 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI546892A/swine/Indiana/13TOSU1141/2013 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527842A/swine/Indiana/13TOSU1047/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527152A/swine/Indiana/13TOSU1048/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527135A/swine/Indiana/13TOSU1058/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527073A/swine/Indiana/13TOSU1045/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527050A/swine/Indiana/13TOSU1060/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527008A/swine/Indiana/13TOSU1056/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI527002A/swine/Indiana/13TOSU1049/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI526977A/swine/Indiana/13TOSU1052/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI526940A/swine/Indiana/13TOSU1044/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI526912A/swine/Indiana/13TOSU1053/2013 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI509743A/swine/Iowa/13H081/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI509722A/swine/Iowa/13H082/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI499923A/swine/Iowa/13H094/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI468208A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI468200A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI465419A/Indiana/17/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI460976A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI443111A/swine/Ohio/A01349495/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI443101A/swine/Ohio/A01349302/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI443098A/swine/Ohio/A01349305/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI426907A/swine/Iowa/A01432308/2013 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI424075A/swine/Michigan/A01259003/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI414155A/swine/Iowa/A01244302/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI401677A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI399293A/swine/Minnesota/A01327922/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI397960A/Ohio/88/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI397509A/Indiana/90/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI396213A/Indiana/113/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI395734A/swine/Indiana/A01104030/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI395343A/Wisconsin/28/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001385/1411 (98%)EPI393915A/swine/Indiana/A00968380/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI383540A/swine/Minnesota/A01203517/2012 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI401668A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 6 (NA)2459.00.000000e+001383/1409 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2457.20.000000e+001383/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2457.20.000000e+001383/1410 (98%)EPI465390A/Indiana/09/2013 (A/H3N2) segment 6 (NA)2457.20.000000e+001383/1410 (98%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI550067A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI549962A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528783A/swine/Indiana/A01260479/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528458A/swine/Indiana/13TOSU1143/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528455A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528426A/swine/Indiana/13TOSU1149/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI528423A/swine/Indiana/13TOSU1144/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527994A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527945A/swine/Indiana/13TOSU1151/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527898A/swine/Indiana/13TOSU1145/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527846A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527158A/swine/Indiana/13TOSU1158/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527087A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI527062A/swine/Indiana/13TOSU1160/2013 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI492407A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001679/1702 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI392748A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397562A/Wisconsin/29/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001672/1702 (98%)EPI396200A/Ohio/79/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001672/1702 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446838A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443542A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443534A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443518A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI443510A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI401687A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI401676A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI398040A/Ohio/57/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397555A/Ohio/86/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI396291A/Ohio/63/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397961A/Ohio/88/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397412A/Michigan/16/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395858A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395850A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393661A/Ohio/62/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI393298A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI392735A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI392696A/Indiana/43/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI392693A/Indiana/38/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI388362A/Indiana/16/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI381427A/swine/Ohio/7/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI381424A/swine/Ohio/9/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI377542A/swine/Ohio/1/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI346440A/Iowa/08/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI346432A/Iowa/07/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI346424A/Iowa/09/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI342704A/Iowa/09/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2970.50.000000e+001671/1702 (98%)EPI414156A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI397206A/Ohio/34/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI396277A/Indiana/135/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI395331A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI394060A/Indiana/38/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI392699A/Indiana/46/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI388290A/Indiana/17/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI342696A/Iowa/08/2011 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI446871A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001671/1703 (98%)EPI440751A/swine/Indiana/A01432492/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI426908A/swine/Iowa/A01432308/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI407279A/Minnesota/18/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI400095A/swine/Indiana/A00968390/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI398124A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397912A/Indiana/114/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397677A/Ohio/83/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397654A/Indiana/90/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397418A/Michigan/23/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397404A/Indiana/99/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397344A/Michigan/19/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI397211A/Indiana/113/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI396239A/Indiana/103/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395956A/swine/Indiana/A00968379/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395948A/swine/Indiana/A00968376/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395940A/swine/Indiana/A00968373/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395932A/swine/Indiana/A00968370/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395740A/swine/Indiana/A00968386/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI395251A/Indiana/152/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI394069A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI394063A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI378523A/Indiana/09/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI378515A/Indiana/07/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI378502A/Indiana/07/2012 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI347607A/Iowa/08/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI347604A/Iowa/07/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI392705A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2963.10.000000e+001669/1702 (98%)EPI392684A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2963.10.000000e+001669/1702 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1700 (98%)EPI397204A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2961.30.000000e+001669/1702 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001670/1703 (98%)EPI509734A/swine/Iowa/13H075/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI499946A/swine/Iowa/13H087/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI493688A/swine/Iowa/13E045/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443109A/swine/Ohio/A01349495/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443106A/swine/Ohio/A01349485/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443099A/swine/Ohio/A01349302/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI443096A/swine/Ohio/A01349305/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI427184A/swine/Indiana/A01260163/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI400101A/swine/Indiana/A00968397/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI397759A/Wisconsin/35/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI397106A/Indiana/115/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI397092A/Indiana/57/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI396246A/Indiana/125/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI396230A/Indiana/147/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395891A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395843A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001670/1703 (98%)EPI395732A/swine/Indiana/A01104030/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395725A/swine/Indiana/A01104029/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395351A/Michigan/20/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI395335A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1702 (98%)EPI392708A/Indiana/59/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI391032A/swine/Iowa/A01202530/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI391031A/swine/Iowa/A01202573/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI391028A/swine/Iowa/A01202529/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369064A/swine/Illinois/A00857304b/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369056A/swine/Illinois/A00857304a/2012 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369048A/swine/Illinois/A00857138b/2011 (A/H1N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369037A/swine/Illinois/A00857138a/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI369022A/swine/Illinois/A00857300/2011 (A/H0) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI317003A/swine/Indiana/A0109091/2010 (A/H3N2) segment 4 (HA)2959.50.000000e+001669/1702 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1700 (98%)EPI392934A/Minnesota/11/2012 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI392711A/Indiana/60/2012 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI504870A/swine/Iowa/A01290867/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI492991A/swine/Iowa/A01394595/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI492391A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI482825A/Iowa/04/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI472195A/swine/Iowa/A01432817/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI472183A/swine/Iowa/A01432840/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI461014A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI460375A/swine/Indiana/A01260280/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI457281A/swine/Korea/CY02-08/2012 (A/H3N1) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI457163A/swine/Indiana/9622/2011 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI457109A/swine/Korea/CY02-07/2012 (A/H3N1) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI453566A/swine/Indiana/A01260230/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI446735A/swine/Ohio/A01349615/2013 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI416854A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI406469A/swine/Indiana/A01260041/2012 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI391369A/swine/Iowa/A01202879/2011 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI391368A/swine/Iowa/A01202878/2011 (A/H3N2) segment 4 (HA)2953.90.000000e+001668/1702 (98%)

LOCUS KU160763 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU160763 VERSION KU160763.1 GI:960314871 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (17-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945939/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945939/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1757162" /segment="4" /country="USA: North Carolina" /collection_date="24-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83428.1" /db_xref="GI:960314872" /translation="MKTIIAFSCILCLIFAQKLPGGDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLVASSGNLEFTQESFNWTGIAQDGSSYACKRGSG NSFFSRLNWLYKLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDSDQTSLYVQASGKV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QNGKSSIMRSDAHIDECNSECITPNGSISNDKPFQNVNKITYGACPRYIKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMIDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDIWSYNAELLVALENQ HTIDLTDSEMNKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945939.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga ttttcgctca aaaacttccc 61 ggaggtgaca acagcatggc aacgctgtgc ctgggacacc atgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcatcaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttacta tgtaccagat 361 tatgccactc ttaggtcact agttgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggaattgc tcaagacgga tcaagctatg cctgcaaaag gggatctggt 481 aacagtttct ttagtagatt gaattggttg tataaattga attacaagta tccagaacag 541 aatgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acagtgacca aaccagccta tatgtccaag catcagggaa agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg gatctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccgggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aaatgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca tttccaatga caaacctttt caaaatgtga acaagatcac atatggagcc 961 tgtcccagat atattaaaca aaacaccctg aaattggcaa caggtatgcg gaatgtacca 1021 gagaaacaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatgatag acggttggta cggtttcagg catcagaatt ctgaaggcac agggcaagca 1141 gcagatctta aaagcactca agcagcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatatctg gtcttacaac 1321 gctgagcttc ttgtagccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 aacaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aatgcctgca tcggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa gggcaacatt 1681 aggtgcaaca tttgcatttg a

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI499985A/swine/North Carolina/A01394918/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI499701A/swine/North Carolina/A01290729/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI487964A/swine/North Carolina/A01290565/2013 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI502663A/swine/Illinois/A01290887/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI487213A/swine/North Carolina/A01290534/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531049A/swine/North Carolina/A01410511/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509545A/swine/North Carolina/A01410024/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509540A/swine/North Carolina/A01290805/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509529A/swine/North Carolina/A01290797/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI507277A/swine/North Carolina/A01409655/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI502715A/swine/North Carolina/A01290800/2013 (A/H1N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI623628A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531067A/swine/North Carolina/A01410520/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531058A/swine/North Carolina/A01410535/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531052A/swine/North Carolina/A01410554/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531046A/swine/North Carolina/A01475277/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531010A/swine/North Carolina/A01410555/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510222A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510180A/swine/North Carolina/A01410205/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI505101A/swine/North Carolina/A01290956/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499665A/swine/North Carolina/A01290725/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499656A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492427A/swine/North Carolina/A01290473/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492393A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531073A/swine/North Carolina/A01475272/2014 (A/H1N1) segment 7 (MP)1766.50.000000e+00973/982 (99%)EPI568694A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI530295A/swine/North Carolina/A01410422/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI508851A/swine/North Carolina/A01410136/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI499637A/swine/North Carolina/A01290636/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI467465A/swine/North Carolina/A01432952/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI542513A/swine/North Carolina/A01476095/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI532396A/swine/North Carolina/A01410625/2014 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI531079A/swine/North Carolina/A01410533/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI531007A/swine/North Carolina/A01475257/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI531001A/swine/North Carolina/A01475256/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI530317A/swine/North Carolina/A01410329/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI510231A/swine/North Carolina/A01409950/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI508877A/swine/North Carolina/A01410180/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI504902A/swine/Illinois/A01411204/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI502700A/swine/North Carolina/A01290857/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI502651A/swine/North Carolina/A01290856/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI489709A/swine/South Carolina/A01394262/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487968A/swine/North Carolina/A01291004/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI463707A/swine/North Carolina/A01432766/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI647515A/swine/North Carolina/A02034477/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI645054A/swine/Illinois/A02090072/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI641468A/swine/Illinois/A01820879/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI621368A/swine/Illinois/A01820513/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI615355A/swine/Illinois/A01820485/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600454A/swine/North Carolina/A01476924/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600427A/swine/North Carolina/A01476896/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600358A/swine/North Carolina/A01476968/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600352A/swine/North Carolina/A01476902/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI597648A/swine/North Carolina/A01478870/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI586022A/swine/North Carolina/A01555546/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI559565A/swine/North Carolina/A01476557/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI559559A/swine/North Carolina/A01478107/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI558830A/swine/North Carolina/A01476722/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557793A/swine/North Carolina/A01476778/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557792A/swine/North Carolina/A01476736/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557791A/swine/North Carolina/A01476738/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557789A/swine/North Carolina/A01476775/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545821A/swine/North Carolina/A01476359/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI532369A/swine/North Carolina/A01410640/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI438228A/swine/Indiana/A01260209/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI542522A/swine/North Carolina/A01477162/2014 (A/H0) segment 7 (MP)1749.90.000000e+00970/982 (98%)EPI672971A/swine/North Carolina/A01945307/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI672959A/swine/North Carolina/A01945329/2015 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI672860A/swine/Illinois/A02090702/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI669147A/swine/North Carolina/A01770469/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI663354A/swine/North Carolina/A02025520/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI663315A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI653909A/swine/North Carolina/A02034933/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI653881A/swine/North Carolina/A02025523/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI647586A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI612564A/swine/North Carolina/A01554473/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI597672A/swine/North Carolina/A01476862/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI597645A/swine/North Carolina/A01476810/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI586055A/swine/North Carolina/A01555549/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI584851A/swine/Nebraska/A01489870/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI584830A/swine/Nebraska/A01489868/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI584810A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI573008A/swine/North Carolina/A01840074/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI568715A/swine/North Carolina/A01555137/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI559598A/swine/North Carolina/A01477720/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI559589A/swine/North Carolina/A01476564/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI545845A/swine/North Carolina/A01476462/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI542516A/swine/North Carolina/A01411902/2014 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI539063A/swine/Nebraska/A01501767/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI532390A/swine/Illinois/A01411761/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI526872A/swine/Minnesota/A01480518/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI505095A/swine/Nebraska/A01409647/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI501539A/swine/South Dakota/A01366063/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI492657A/swine/Nebraska/A01394342/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI467890A/swine/Nebraska/A01397576/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401625A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI502568A/swine/Nebraska/A01395675/2013 (A/H3N2) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI673003A/swine/North Carolina/120138/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI669232A/swine/North Carolina/A02025765/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI653895A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI612561A/swine/North Carolina/A02076144/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI596341A/swine/North Carolina/A01841556/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI596335A/swine/North Carolina/A01841555/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI593903A/swine/North Carolina/A01840366/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI586129A/swine/North Carolina/A01555663/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI573798A/swine/North Carolina/A01840320/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI568716A/swine/North Carolina/A01555212/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI568693A/swine/North Carolina/A01840329/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI560137A/swine/Nebraska/A01565950/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI558833A/swine/North Carolina/A01476714/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI548246A/swine/North Carolina/A01476535/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI531013A/swine/North Carolina/A01475255/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI509759A/swine/Minnesota/A01366992/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI502690A/swine/North Carolina/A01290799/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI499988A/swine/Nebraska/A01394567/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI487955A/swine/Indiana/A01260366/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI476530A/swine/Illinois/A01398587/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2540.30.000000e+001398/1410 (99%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI623627A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001395/1411 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI672888A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528783A/swine/Indiana/A01260479/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2508.90.000000e+001390/1406 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397387A/Indiana/49/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397214A/Pennsylvania/17/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397212A/Indiana/115/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397124A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396245A/Indiana/125/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396229A/Indiana/147/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396222A/Indiana/57/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395942A/swine/Indiana/A00968373/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395929A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395893A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395269A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394076A/Wisconsin/27/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394068A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3094.30.000000e+001692/1701 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1701 (99%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3062.90.000000e+001684/1698 (99%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1701 (99%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3051.80.000000e+001684/1701 (99%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3051.80.000000e+001683/1699 (99%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001683/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001681/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001681/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001678/1699 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI671792A/swine/Illinois/A01857433/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI645058A/swine/Indiana/A01260926/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)3007.50.000000e+001675/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)

LOCUS KU160678 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU160678 VERSION KU160678.1 GI:960314328 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (17-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945823/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945823/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1757159" /segment="4" /country="USA: North Carolina" /collection_date="23-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83317.1" /db_xref="GI:960314329" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQNSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACKRGSV KSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGESSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKSVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945823.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 aattcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcaaaag gggttctgtt 481 aaaagtttct ttagtagatt gaattggtta tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtggggaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa atttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatgga 1501 acctatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaagt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI672889A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI669246A/swine/North Carolina/A02025869/2015 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI673003A/swine/North Carolina/120138/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669232A/swine/North Carolina/A02025765/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI593903A/swine/North Carolina/A01840366/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586129A/swine/North Carolina/A01555663/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573798A/swine/North Carolina/A01840320/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568716A/swine/North Carolina/A01555212/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI558833A/swine/North Carolina/A01476714/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI548246A/swine/North Carolina/A01476535/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI600375A/swine/North Carolina/A01476945/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI596359A/swine/North Carolina/A01841422/2015 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI586126A/swine/North Carolina/A01555658/2015 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI663345A/swine/North Carolina/A01769148/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI653878A/swine/North Carolina/A02035922/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI641842A/swine/Illinois/A02024782/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI641825A/swine/Illinois/A02024781/2015 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620551A/swine/North Carolina/A02077383/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669165A/swine/North Carolina/A02025672/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI669159A/swine/North Carolina/A02025667/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI641627A/swine/Illinois/A02090002/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI590786A/swine/Iowa/A02076105/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542513A/swine/North Carolina/A01476095/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531079A/swine/North Carolina/A01410533/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531007A/swine/North Carolina/A01475257/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531001A/swine/North Carolina/A01475256/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530317A/swine/North Carolina/A01410329/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502700A/swine/North Carolina/A01290857/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502651A/swine/North Carolina/A01290856/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI489709A/swine/South Carolina/A01394262/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI487968A/swine/North Carolina/A01291004/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI647515A/swine/North Carolina/A02034477/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI645054A/swine/Illinois/A02090072/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI641468A/swine/Illinois/A01820879/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI621368A/swine/Illinois/A01820513/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI620545A/swine/North Carolina/A02076661/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI615355A/swine/Illinois/A01820485/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600454A/swine/North Carolina/A01476924/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600427A/swine/North Carolina/A01476896/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600358A/swine/North Carolina/A01476968/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600352A/swine/North Carolina/A01476902/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI597648A/swine/North Carolina/A01478870/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI586022A/swine/North Carolina/A01555546/2015 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559565A/swine/North Carolina/A01476557/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559559A/swine/North Carolina/A01478107/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557793A/swine/North Carolina/A01476778/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557792A/swine/North Carolina/A01476736/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557791A/swine/North Carolina/A01476738/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI557789A/swine/North Carolina/A01476775/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI545821A/swine/North Carolina/A01476359/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI532369A/swine/North Carolina/A01410640/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542522A/swine/North Carolina/A01477162/2014 (A/H0) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI672971A/swine/North Carolina/A01945307/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI672959A/swine/North Carolina/A01945329/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI672860A/swine/Illinois/A02090702/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI669147A/swine/North Carolina/A01770469/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI663354A/swine/North Carolina/A02025520/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI653881A/swine/North Carolina/A02025523/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612564A/swine/North Carolina/A01554473/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI597672A/swine/North Carolina/A01476862/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI597645A/swine/North Carolina/A01476810/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586055A/swine/North Carolina/A01555549/2015 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584810A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573008A/swine/North Carolina/A01840074/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI568715A/swine/North Carolina/A01555137/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI559598A/swine/North Carolina/A01477720/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI559589A/swine/North Carolina/A01476564/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI545845A/swine/North Carolina/A01476462/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI542516A/swine/North Carolina/A01411902/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531046A/swine/North Carolina/A01475277/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510222A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499656A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI669214A/swine/North Carolina/A01857099/2015 (A/H1N2) segment 7 (MP)1764.70.000000e+00972/982 (98%)EPI612561A/swine/North Carolina/A02076144/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI596341A/swine/North Carolina/A01841556/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI596335A/swine/North Carolina/A01841555/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI568693A/swine/North Carolina/A01840329/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI531013A/swine/North Carolina/A01475255/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00974/983 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI467465A/swine/North Carolina/A01432952/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI502715A/swine/North Carolina/A01290800/2013 (A/H1N2) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI672916A/swine/North Carolina/A01945079/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI672910A/swine/North Carolina/A01945113/2015 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI672901A/swine/North Carolina/A01945109/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI499665A/swine/North Carolina/A01290725/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492427A/swine/North Carolina/A01290473/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492393A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487213A/swine/North Carolina/A01290534/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI653909A/swine/North Carolina/A02034933/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600460A/swine/North Carolina/A01476958/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI597633A/swine/North Carolina/A01476843/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI559580A/swine/North Carolina/A01477675/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI559556A/swine/North Carolina/A01476569/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI542455A/swine/North Carolina/A01477163/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00972/983 (98%)EPI532396A/swine/North Carolina/A01410625/2014 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI531049A/swine/North Carolina/A01410511/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509545A/swine/North Carolina/A01410024/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509540A/swine/North Carolina/A01290805/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509529A/swine/North Carolina/A01290797/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI508851A/swine/North Carolina/A01410136/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI507277A/swine/North Carolina/A01409655/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI499637A/swine/North Carolina/A01290636/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI669150A/swine/North Carolina/A02025647/2015 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI573044A/swine/North Carolina/A01477985/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI548264A/swine/North Carolina/A01478067/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI548255A/swine/North Carolina/A01478068/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI548252A/swine/North Carolina/A01476484/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00971/983 (98%)EPI531067A/swine/North Carolina/A01410520/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531058A/swine/North Carolina/A01410535/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531052A/swine/North Carolina/A01410554/2014 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531010A/swine/North Carolina/A01410555/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI510231A/swine/North Carolina/A01409950/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI510180A/swine/North Carolina/A01410205/2014 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI508877A/swine/North Carolina/A01410180/2014 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI505101A/swine/North Carolina/A01290956/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI504902A/swine/Illinois/A01411204/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI499985A/swine/North Carolina/A01394918/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI499701A/swine/North Carolina/A01290729/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI487964A/swine/North Carolina/A01290565/2013 (A/H0) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI463707A/swine/North Carolina/A01432766/2013 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI531073A/swine/North Carolina/A01475272/2014 (A/H1N1) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI672919A/swine/North Carolina/A01795104/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI672895A/swine/North Carolina/A01945127/2015 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI568694A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI559523A/swine/North Carolina/A01476677/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00970/983 (98%)EPI530295A/swine/North Carolina/A01410422/2014 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI502663A/swine/Illinois/A01290887/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI388330A/Utah/10/2012 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI663315A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI647586A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI558830A/swine/North Carolina/A01476722/2014 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI468629A/swine/Maryland/A01319694/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI467729A/swine/Ohio/A01351710/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI467726A/swine/Ohio/A01351683/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401625A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1737.00.000000e+00968/982 (98%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1735.10.000000e+00967/981 (98%)EPI433327A/swine/Wyoming/A01444566/2013 (A/H3N2) segment 7 (MP)1733.30.000000e+00967/982 (98%)EPI653895A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1731.40.000000e+00967/982 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI672888A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2562.40.000000e+001402/1410 (99%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2562.40.000000e+001402/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2556.90.000000e+001401/1410 (99%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2556.90.000000e+001401/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2556.90.000000e+001401/1410 (99%)EPI669225A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI669210A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI663335A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI623704A/swine/Indiana/A01260882/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001402/1411 (99%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI669237A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI647570A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI623652A/swine/Illinois/A02076874/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI620524A/swine/Iowa/A02076873/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2545.80.000000e+001400/1411 (99%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI620527A/swine/Iowa/A02077538/2015 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2540.30.000000e+001398/1410 (99%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI647585A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573600A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001397/1411 (99%)EPI545417A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001397/1411 (99%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI453567A/swine/Indiana/A01260230/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2525.50.000000e+001393/1406 (99%)EPI663314A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI573810A/swine/Indiana/A01840344/2014 (A/H1N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI545859A/swine/North Carolina/A01476419/2014 (A/H0) segment 6 (NA)2521.80.000000e+001396/1411 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)