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Pandemic Potentials Blog

niman

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  1. Fujian H5 In Mallard In Morrow County Oregon

    niman posted a topic in Avian Flu
    APHIS has reported the detection Fujian H5 in a hunter harvested mallard in Morrow County, Oregon. http://content.govdelivery.com/accounts/USDAAPHIS/bulletins/128fbc7

  2. Sequence Stability In Clade 2.3.4.4 In Taiwan

    niman replied to niman's topic in Avian Flu
    表 2、胺基酸序列相似度（％） PB2 PB1 PA HA NP NA M1 M2 NEP NS1 H5N8 (a15 與 h23) 99.9 99.9 99.7 99.8 100 100 100 100 100 99.6 變異位 D567N T156A V100A D394N D70N V106M H5N2 (a5 與 h24) 99.5 99.7 99.6 99.5 100 98.7 100 97.9 97.5 97.8 變異位 H13Q V67I V338I A397T E75D G622A N254S I354V D396N M63V S143T S157P K143N S306G R344K E381D T385K N402D L26I V27I I12M M52V H56Y T123I D125G T170A D209G P213L

  3. Sequence Stability In Clade 2.3.4.4 In Taiwan

    niman replied to niman's topic in Avian Flu
    http://ai.gov.tw/files/web_structure/1230/file_1.pdfLivestock Wei - Analysis of the third quarter of avian influenza virus message: To follow up this year after the occurrence of the new influenza in poultry occurred strain field evolution The conditions and the recombinant virus or a new invasion, animal health will be a quarterly in accordance with the timing of the regular hair Green field strain analysis. Separation of the season in August for this (104) in Chiayi County duck H5N8 bird flu virus and Yunlin County H5N2 avian influenza virus isolates the farm full eight Analysis of gene sequence segments. By comparison with the two virus strains January isolates (a15 and a5) results Tables 1 and 2 below. Table 1 shows the H5N2 or H5N8 between January and August of strains, each Nucleic acid sequence of the gene fragment Jieyou high degree of similarity (similarity are more than 99.2%), two-phase By comparison, whether H5N8 or H5N2, which in January and August analyze strains are showing high Degree of homology, not for a new invasion of the virus, nor with domestic local old virus gene rearrangements group. Its HA gene is still H5 GS / GD series 2.3.4.4 grouping. Each gene conversion Amino acid sequence similarity and amino acids compared with each variation sites as shown in Table 2; H5N8 8 the month Compared with January isolates (a15) of the amino acids from plants (h23), NP, NA, M1, M2 and NEP protein amino acid sequence similarity paragraph 5 was 100%, while the PB2, PB1, PA, HA and NS1 paragraphs only 1 to 2 sites of amino acid variation, should be a common RNA viruses Point mutations phenomenon. August H5N2 virus isolates (h24) and January isolates (a5) of the amino acid Sequence alignment results, in addition to the two proteins NP and M1, other PB2, PB1, PA, HA, M2, NEP and NS1 protein is a more visible site amino acid variation phenomenon, which May be associated with the virus by the waterfowl (geese) into terrestrial birds (chicken) is host adaptation, pending further Assessment. In livestock Wei October 21 this year, organized by "2015 influenza and poultry International Symposium on the control "of the report, US researchers isolate the country for analysis, This wave of the epidemic early viral strains from waterfowl, migratory birds brought in by the (new this year with Taiwan occurred Highly pathogenic avian influenza virus with the 2.3.4.4 clade A2 group), have not yet adapted to the chicken (test hair Now, early isolates of mallards just 102 EID50 viral load, to duck just 103 EID50 The amount of virus infection can be established, but the chicken was established in order to infect it needs 105.7 EID50 about ducks 100 to 1,000 times the amount of virus), but later the epidemic (three months later) an isolated place in a commercial chicken disease Strains of chicken is also only 10 ^ 3.3 EID50 virus infection can be established amount, expressed late isolates Increase the adaptability of the chickens, so the amount of virus needed also decreases. In the domestic epidemic yet Before blocking, adaptive evolution similar to going on the same host (as shown in Table 2 amino acid sites changed Shown oriented), through the evolution of the virus may be a few months, for chickens sensitivity compared outbreak Early increase. Therefore, we recommend that owners should be vigilant and to strengthen and implement biosecurity measures for poultry farms Shi is the only way, and work together with the government want to remove the virus. Isolates the nucleic acid sequence of the season if there are research scholars reference needs, please contact radial carcass Wei take.

  4. Sequence Stability In Clade 2.3.4.4 In Taiwan

    niman posted a topic in Avian Flu
    Taiwan report on August clade 2.3.4.4 sequences show stabilty when compared to January sequences. http://ai.gov.tw/files/web_structure/1230/file_1.pdf

  5. 24,180 Wild Birds Tested In United States 2015/2016 Season

    niman replied to niman's topic in Avian Flu
    July 2015 – June 2016 Total birds sampled by flyway Last Updated: 11/27/2015 Total birds sampled: 24,180 Total HPAI positive cases: 1 Atlantic: 5,917 Mississippi: 7,785 Central: 4,631 Pacific: 5,823 American Oceania f : 24

  6. 24,180 Wild Birds Tested In United States 2015/2016 Season

    niman posted a topic in Avian Flu
    APHIS November 27 update increases tested wild birds to 24,180. https://www.aphis.usda.gov/wildlife_damage/downloads/JULY 2015 - JUNE 2016 WILD BIRD POSITIVE HIGHLY PATHOGENIC AVIAN INFLUENZA CASES IN THE UNITED STATES.pdf

  7. 22,563 Wild Birds Tested In United States 2015/2016 Season

    niman replied to niman's topic in Avian Flu
    July 2015 – June 2016 Total birds sampled by flyway Last Updated: 11/20/2015 Total birds sampled: 22,563 Total HPAI positive cases: 1 Atlantic: 5,524 Mississippi: 7,408 Central: 3,993 Pacific: 5,616 American Oceania f : 22

  8. 22,563 Wild Birds Tested In United States 2015/2016 Season

    niman posted a topic in Avian Flu
    The number of wild birds tested by APHIS for Fujian H5 has increased to 22,563. https://www.aphis.usda.gov/wildlife_damage/downloads/JULY 2015 - JUNE 2016 WILD BIRD POSITIVE HIGHLY PATHOGENIC AVIAN INFLUENZA CASES IN THE UNITED STATES.pdf

  9. USDA Issues RFP For FujianH5 Vaccine

    niman replied to niman's topic in Avian Flu
    Avian Influenza Vaccines, Eurasian HPAI H5Solicitation Number: AG-6395-S-16-0005Agency: Department of Agriculture Office: Animal and Plant Health Inspection Service Location: Administrative Services Division/Contracting PrintLinkCopy or Bookmark this PageCopy the url below for a direct link to this page. Bookmark this page by right-clicking here and choosing "Add Link to Bookmarks" Notice DetailsPackagesInterested Vendors List Complete ViewOriginal SynopsisPresolicitationNov 06, 201510:13 amChangedNov 20, 20159:25 amSolicitation Solicitation Number:AG-6395-S-16-0005Notice Type:Solicitation Synopsis:Added: Nov 06, 2015 10:13 amThe U.S. Department of Agriculture (USDA), Animal and Plant Health Inspection Service (APHIS) intends to award multiple commercial, indefinite-delivery indefinite-quantity (IDIQ) contracts for vaccines and vaccine combinations effective against Eurasian highly pathogenic avian influenza virus H5 clade 2.3.4.4 (EA H5) in order to establish an emergency vaccine stockpile.The APHIS National Veterinary Stockpile (NVS) is the nation's repository of critical veterinary supplies, equipment, and service resources. It exists because of the nation's concern over animal diseases of catastrophic proportions that would• deplete State and local response inventories, • generate surge requirements that would overwhelm commercial sources, and• prevent unaffected States from providing significant help for fear of the threat crossing their borders. NVS's ability to deploy within 24 hours large amounts of critical veterinary resources ensures states have what they need to respond to catastrophes and other outbreaks. The arrival and subsequent evolution of Eurasian HPAI H5 viruses of clade 2.3.4.4 lineage (EA H5 viruses) in North America has resulted in a catastrophic epiornitic, affecting both domestic poultry and captive avian wildlife. These viruses may persist within the wild bird compartment which could serve as a reservoir and pose a significant threat to U.S. poultry and avian collections. Therefore, NVS seeks sufficient supplies of vaccine, to be used singly or in combination with other vaccines that are effective against EA H5 viruses, suitable for use in chickens and/or turkeys ranging from one-day of age up to ≥ 3 years of age. The goal is to acquire and maintain an emergency/supplementary stockpile of EA H5 vaccines available for delivery anywhere in the United States within 24 hours of order by the NVS. Such products might include but not be limited to the following formulations/platforms: finished vaccine with shelf-life ≥ 1 year; vaccine precursors that can be rapidly processed into finished vaccine (e.g., antigen concentrates for inactivated vaccines) with potency retention of ≥ 2 years; and modified-live, or nonviable/nonreplicating vaccines that can be stored in a manner to ensure potency retention of ≥ 2 years. This vaccine stockpile would be used for emergency vaccination and to supplement commercial supplies as part of a larger vaccination campaign. All finished vaccines or vaccine precursors would be stored and maintained at the manufacturer. Nationally, the placement rate of laying hens and meat turkeys is approximately 20 million birds per month. With each bird requiring two doses of vaccine prior to placement, 80 million doses per month will be needed just for these two sectors alone. Therefore, vaccine companies should minimally have a production capacity ≥ 100 million doses per month to address these two sectors. NVS seeks a contract that will have the following components: 1) Production and banking of AI vaccine or vaccine precursors: Contractors would produce and store product and must demonstrate a storage capacity of a minimum of 100 million doses to a maximum of 500 million doses of vaccine or vaccine precursor that are effective against EA H5 viruses, whether used alone or as combinations of different vaccines;2) Vaccine must be fully licensed, conditionally licensed, or permitted (only products permitted for general distribution and sale will be considered) in accordance with the Center for Veterinary Biologics (CVB) regulations in order to be eligible for award. Delivery anywhere within the continental U.S. of up to 100 million doses of finished vaccine eligible for distribution and sale must be made within 10 calendar days of order as directed by the NVS;3) Vaccine or vaccine precursor must be stored in a manner consistent with the longest potency viability of the product, and demonstrate satisfactory potency when tested at twelve (12) month intervals throughout the duration of the contract;4) Small serials of finished vaccine from vaccine precursor will be produced by the manufacturer every twelve (12) months and potency tested by the manufacturer and provide potency data for review by the CVB;5) Samples of finished vaccine and/or serum samples from vaccinated birds will be provided to CVB if requested by the CVB; 6) Product will be stored by the manufacturer in a manner that ensures the longest shelf life while retaining satisfactory potency as determined by the CVB (e.g., vaccine antigen concentrate) which shall be no less than two years; The contracts will have a guaranteed minimum of $6 million worth of doses up to a maximum of 500 million doses of vaccine or vaccine precursor effective against EA H5. The North American Industry Classification System code is 325414 with a small business size standard of 500 employees. Solicitation number AG-6395-S-16-0005 will be will be issued on an unrestricted basis and posted on FBO during the latter part of November, 2015. Any questions or inquiries must be e-mailed to Jim Roloff, contracting officer, at [email protected]. Please consult the list of document viewers if you cannot open a file.Solicitation 1Type: SolicitationPosted Date: November 20, 2015Solicitation_AG-6395-S-16-0005.pdf (473.45 Kb)Description: Solicitation Contracting Office Address:100 North 6TH Street Butler Square 5TH Floor Minneapolis, Minnesota 55403 Primary Point of Contact.:Jim Roloff,Contracting [email protected]: 6123363223

  10. USDA Issues RFP For FujianH5 Vaccine

    niman replied to niman's topic in Avian Flu
    USDA Issues Second Request for Proposals for Highly Pathogenic Avian Influenza VaccinePublished: Nov 20, 2015 PrintAgency Continues to Prepare for the Potential Return of this Disease November 20, 2015 -- The United States Department of Agriculture’s Animal and Plant Health Inspection Service (APHIS) continues to prepare for the potential return of highly pathogenic avian influenza (HPAI). APHIS is issuing its second request for proposals (RFP) for vaccine manufacturers with the interest and capability to supply a variety of EA H5 vaccines in sufficient numbers to add to the emergency stockpile. APHIS has not approved the use of vaccine to respond to HPAI to date; however, the Agency is preparing to ensure that vaccine is available should the decision be made to use it. Any decision to use vaccination in a future HPAI outbreak would require careful consideration of the efficacy of the vaccine, any impacts of using HPAI vaccine in the field, and the potential trade impacts. In response to the first RFP issued in August, APHIS awarded contracts for doses of two vaccines for the Eurasian H5 (EA H5) virus strain, which became part of the National Veterinary Stockpile. Vaccines will be carefully evaluated on a number of factors including their efficacy against EA H5 viruses, and products must meet all of APHIS’ safety, potency, and purity standards. All eligible products to be considered must be either conditionally or fully licensed or permitted at the time of submission. Vaccine manufacturers will be evaluated on their ability to produce such vaccines in a timely manner in adequate numbers to meet the needs of the response. The RFP is available here. Although no decision has been made to use vaccine in the event of a future HPAI outbreak, APHIS will continue to issue RFPs for vaccine manufacturers on a quarterly basis through September 2016, to allow additional products to be developed and considered for the stockpile should an HPAI outbreak occur. USDA is an equal opportunity provider and employer. To file a complaint of discrimination, write: USDA, Office of the Assistant Secretary for Civil Rights, Office of Adjudication, 1400 Independence Ave., SW, Washington, DC 20250-9410 or call (866) 632-9992 (Toll-free Customer Service), (800) 877-8339 (Local or Federal relay), (866) 377-8642 (Relay voice users).

  11. USDA Issues RFP For FujianH5 Vaccine

    niman posted a topic in Avian Flu
    USDA has issue another RFP for a Fujian (clade 2.3.4.4) H5 vaccine https://www.aphis.usda.gov/wps/portal/aphis/newsroom/stakeholder-info/ct_stakeholder_announcements/!ut/p/a1/rVPBctowEP2WHHLUaJFsSz4CScAGSie0KfjiWdsCq7FlYjtp6ddXdug07RTCobpp9d7Oe6u3NKJrGhl80TtsdWWw6O6RFzuBZIwDC-QnIWEIYz9cBg8A3LWAjQXAiTOEnh8up2wwsvzlLPAg-PBwD6PpzQBWnH6hEY1S0-7bnG5wn-smTivTKtPGhU5qrA_X0GBs1LemrqqyvzQtPqq8KjJVN9eQtm8LMRpTPZtUlbZF0zXfpzqjG49zxBSQuMwB4ripJAlmimwTQCWVEIkQRzNn1P5hZrLyb7vnu4WcC76cOkf-eDKcOmJu7TuSQXBjycJfAATeZfwzgHc-ox_mOwp6wLn_-kvk5HZkNdzNP4pZyGDm0o0VKU6K9B26-j31hPlb8JgiXA6QOGnCCbroEuZm2yxLU8G5oOEFY2H1YrzY2bbY5kSbbUXXNghodIlFnOlGYaPirl6XfXRfn180mjhXWNhwrW1OXgsWVjwr8wN_EY-WTg029N5auihI4QVr8w9LZ6NsKfrr01M0tPvSbcj3lq7__8Lsy8-l5AetyeO9tEqLHcFEHnixu7r6CZ8B7dM!/?1dmy&urile=wcm%3apath%3a%2FAPHIS_Content_Library%2FSA_Newsroom%2FSA_Stakeholder_Announcements%2FSA_By_Date%2FSA_2015%2FNovember%2FUSDA%2BIssues%2BSecond%2BRequest%2Bfor%2BProposals%2Bfor%2BHighly%2BPathogenic%2BAvian%2BInfluenza%2BVaccine

  12. Rense Interviews On Infectious Diseases

    niman replied to niman's topic in Dr. Niman's Corner
    http://rense.gsradio.net:8080/rense/special/rense_111915_hr1.mp3

  13. Rense Interviews On Infectious Diseases

    niman replied to niman's topic in Dr. Niman's Corner
    Listen live http://www.renseradio.com/listenlive.htm

  14. Rense Interviews On Infectious Diseases

    niman replied to niman's topic in Dr. Niman's Corner
    Interview tonight 10:00 EST Dr. Henry L. Niman, PhDFlu Begins

  15. 21,421 Wild Birds Tested In United States 2015/2016 Season

    niman replied to niman's topic in Avian Flu
    July 2015 – June 2016 Total birds sampled by flyway Last Updated: 11/13/2015 Total birds sampled: 21,421 Total HPAI positive cases: 1 Atlantic: 5,054 Mississippi: 7,281 Central: 3,759 Pacific: 5,305 American Oceania f : 22

  16. 21,421 Wild Birds Tested In United States 2015/2016 Season

    niman posted a topic in Avian Flu
    APHIS November 13 update increases the number of birds sampled in the 2015/2016 season to 21,421. https://www.aphis.usda.gov/wildlife_damage/downloads/JULY 2015 - JUNE 2016 WILD BIRD POSITIVE HIGHLY PATHOGENIC AVIAN INFLUENZA CASES IN THE UNITED STATES.pdf

  17. Novel September 2015 North Carolina Swine Matches Human Cases

    niman replied to niman's topic in Dr. Niman's Corner
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI653888A/swine/Iowa/A02025409/2015 (A/H3N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI560279A/swine/Ontario/204-76/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI560273A/swine/Ontario/107-22/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI354668A/turkey/Ontario/FAV-9/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI353642A/turkey/Ontario/FAV-10/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI488001A/swine/Illinois/A01290614/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI560272A/swine/Ontario/105-56/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI461449A/swine/Minnesota/A01381378/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI420408A/swine/Indiana/A01260155/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI341730A/swine/Michigan/A01202035/2011 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI341728A/swine/Michigan/A01202037/2011 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI341729A/swine/Michigan/A01202036/2011 (A/H1N2) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI560271A/swine/Ontario/104-25/2012 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI460386A/swine/Indiana/A01260285/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI391472A/swine/Indiana/A01202867/2011 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI391440A/swine/Indiana/A01202866/2011 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI634921A/Singapore/DMS1206/2011 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI544916A/canine/Korea/VC125678/2012 (A/H3N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI544909A/canine/Korea/VC123578/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI544902A/canine/Korea/VC378/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI487989A/swine/Illinois/A01291649/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI487977A/swine/Illinois/A01291006/2013 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI460108A/canine/Korea/MV1/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI443411A/swine/Michigan/A01259034/2012 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI426876A/swine/Michigan/A01432375/2013 (A/H3N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI385782A/Singapore/GP4367/2010 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI385776A/Singapore/GP4353/2010 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI379167A/Singapore/GP3205/2009 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI378872A/Singapore/GP2224/2009 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI374144A/Malaysia/2156796/2009 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI356996A/SAPPORO/4/2012 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI356149A/Argentina/9721/2009(H1N1) (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI355204A/Sapporo/163/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI350293A/Helsinki/P15/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI342426A/Japan/8153/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI334512A/SAPPORO/163/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI334474A/NAGANO/2289/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI334470A/SHIZUOKA/13/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI334469A/AICHI/155/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI334465A/TOTTORI/17/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI334463A/YOKOHAMA/84/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI332036A/District of Columbia/INS525/2010 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329131A/TOCHIGI/64/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329130A/IBARAKI/108/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329129A/IBARAKI/107/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329128A/IBARAKI/106/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329127A/IBARAKI/104/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329126A/IBARAKI/103/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI329115A/HIROSHIMA/55/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI318164A/IWATE/1008/2011 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI316968A/canine/Korea/1/2010 (A/H3N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI312652A/swine/Indiana/240218/2010 (A/H1N2) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI308032A/Colorado/WRAIR0353S/2009 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI282096A/Athens/INS345/2009 (A/H1N1) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI275076A/Managua/5212.04/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI274540A/Athens/INS353/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI273867A/Washington/75/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI270008A/Ulgii/9911/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI267803A/New York/7426/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI259192A/swine/MO/17314/2010 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI258721A/Madrid/INS186/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI258585A/California/VRDL93/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI257585A/Jiangsu-Gulou/SWL1633/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI257189A/SAPPORO/190/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI256551A/Liaoning-Shuncheng/SWL1148/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI256489A/Sichuan-Wuhou/SWL4391/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI253153A/Shanxi/SWL1/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI252765A/Texas/JMS362/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI247740A/San Diego/INS75/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI247489A/Washington/72/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI247485A/Washington/70/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI247482A/Washington/69/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI247339A/Maryland/37/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI246559A/New York/5074/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI245955A/ferret/OR/23775/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI245050A/Australia/53/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI243891A/Taiwan/1127/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI239611A/Minnesota/18/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI231440A/Washington/62/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI231285A/Washington/63/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI230508A/swine/Italy/290271/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI227900A/Washington/60/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI223985A/Texas/45113911/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI223865A/Texas/45072273/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI217207A/Utah/31/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI190924A/Canada-AB/RV1531/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI181278A/Finland/553/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI179161A/New York/12/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI179005A/Canada-ON/RV1529/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI178285A/Canada-ON/RV1527/2009 (A/H1N1 pdm09) segment 7 (MP)1748.10.000000e+00970/982 (98%)EPI305017A/CastillaLaMancha/RR4907/2009 (A/H1N1 pdm09) segment 7 (MP)1746.20.000000e+00969/981 (98%)EPI221100A/Maryland/15/2009 (A/H1N1 pdm09) segment 7 (MP)1744.40.000000e+00969/982 (98%)EPI635104A/Singapore/DMS913/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635103A/Singapore/DMS847/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635085A/Singapore/DMS980/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635083A/Singapore/DMS978/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635081A/Singapore/DMS962/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635079A/Singapore/DMS952/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635078A/Singapore/DMS946/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635074A/Singapore/DMS905/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635070A/Singapore/DMS870/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635069A/Singapore/DMS869/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635067A/Singapore/DMS835/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635063A/Singapore/DMS804/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635059A/Singapore/DMS76/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635058A/Singapore/DMS752/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635057A/Singapore/DMS43/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635055A/Singapore/DMS74/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635053A/Singapore/DMS722/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635050A/Singapore/DMS698/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635049A/Singapore/DMS69/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635047A/Singapore/DMS676/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635045A/Singapore/DMS665/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635043A/Singapore/DMS653/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635041A/Singapore/DMS64/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635040A/Singapore/DMS638/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635039A/Singapore/DMS63/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635038A/Singapore/DMS623/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635037A/Singapore/DMS62/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635036A/Singapore/DMS618/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635035A/Singapore/DMS617/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635034A/Singapore/DMS61/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635029A/Singapore/DMS562/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635026A/Singapore/DMS547/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635023A/Singapore/DMS516/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635022A/Singapore/DMS51/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635019A/Singapore/DMS48/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635017A/Singapore/DMS46/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635016A/Singapore/DMS44/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635014A/Singapore/DMS41/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635013A/Singapore/DMS40/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635012A/Singapore/DMS39/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635011A/Singapore/DMS385/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635006A/Singapore/DMS31/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635005A/Singapore/DMS30/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635004A/Singapore/DMS29/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635003A/Singapore/DMS28/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI635000A/Singapore/DMS24/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634998A/Singapore/DMS223/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634997A/Singapore/DMS22/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634996A/Singapore/DMS21/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634995A/Singapore/DMS20/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634994A/Singapore/DMS19/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634993A/Singapore/DMS18/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634992A/Singapore/DMS17/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634988A/Singapore/DMS16/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634982A/Singapore/DMS145/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634979A/Singapore/DMS14/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634970A/Singapore/DMS13/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634959A/Singapore/DMS1237/2012 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634946A/Singapore/DMS1234/2012 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634945A/Singapore/DMS1233/2012 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634942A/Singapore/DMS1230/2011 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634916A/Singapore/DMS12/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634868A/Singapore/DMS115/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634863A/Singapore/DMS110/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634862A/Singapore/DMS11/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634856A/Singapore/DMS1006/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634855A/Singapore/DMS100/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634853A/Singapore/DMS7/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634852A/Singapore/DMS5/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI634850A/Singapore/DMS1/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623354A/England/WTSI2076/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623298A/England/01580003/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623222A/England/WTSI2067/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623201A/England/01220639/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623096A/England/01180015/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623068A/England/01580005/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI623054A/England/WTSI1774/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI622825A/Oman/SQUH-63/2012 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI622824A/Oman/SQUH-62/2012 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI622805A/Oman/SQUH-31/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI622797A/Oman/SQUH-5/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI622474A/swine/Brazil/185-11-7/2011 (A/H1N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610898A/swine/Sri Lanka/913/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610886A/swine/Sri Lanka/654/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610880A/swine/Sri Lanka/653/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610868A/swine/Sri Lanka/348/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610862A/swine/Sri Lanka/330/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610856A/swine/Sri Lanka/329/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610850A/swine/Sri Lanka/327/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610844A/swine/Sri Lanka/324/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610838A/swine/Sri Lanka/319/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610832A/swine/Sri Lanka/311/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610826A/swine/Sri Lanka/287/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610820A/swine/Sri Lanka/277/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI610814A/swine/Sri Lanka/180/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597992A/Singapore/502J/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597990A/Singapore/496T/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597989A/Singapore/495W/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597988A/Singapore/484S/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597987A/Singapore/482H/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597986A/Singapore/469O/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597985A/Singapore/427O/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597984A/Singapore/491H/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597983A/Singapore/483A/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597982A/Singapore/481Y/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597981A/Singapore/480Y/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597980A/Singapore/468H/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597978A/Singapore/463B/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597977A/Singapore/448D/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597976A/Singapore/444W/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597974A/Singapore/441T/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597973A/Singapore/440F/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597971A/Singapore/426N/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597970A/Singapore/420T/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597968A/Singapore/418W/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597967A/Singapore/416C/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597966A/Singapore/413Y/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597964A/Singapore/406K/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597961A/Singapore/394T/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597960A/Singapore/392N/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597959A/Singapore/390T/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597958A/Singapore/386T/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597957A/Singapore/385K/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597956A/Singapore/384P/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597955A/Singapore/376Y/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI597604A/Tomsk/273/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI593716A/swine/Illinois/A00970778/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI593711A/swine/Illinois/A00970781/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI566452A/Perth/33/2011 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI560278A/swine/Ontario/11-105317/2011 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI560270A/swine/Ontario/103-18/2011 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI559261A/swine/Indiana/28-1018/2010 (A/H3N2) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542372A/Tomsk/273-MA3/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542365A/Tomsk/273-MA2/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542358A/Tomsk/273-MA1/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI542146A/Jena/5258/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI537968A/Florida/49/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534925A/Mumbai/2877/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534919A/Mumbai/193/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534909A/Mumbai/3109/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534902A/Mumbai/3165/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI534899A/Mumbai/3072/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI512126A/Tennessee/F1057c56/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI512069A/Tennessee/F1067/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI512062A/Tennessee/F1066c65/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI512055A/Tennessee/F1063A/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI512045A/Tennessee/F1083c80/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI511972A/Tennessee/F1093A/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI511647A/Tennessee/F1080/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI511640A/Tennessee/F1035/2010 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508336A/Finland/694/2009 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508217A/Senegal/021/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508213A/Ghana/FS-10-4048/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508211A/Ghana/FS-10-3959/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508209A/Ghana/FS-10-3964/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508207A/Ghana/FS-10-3745/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI508200A/CapeTown/29/2010 (A/H1N1 pdm09) segment 7 (MP)1742.50.000000e+00969/982 (98%)EPI506397A/New Zealand/2047/2009 (A/H1N1) segment 7 (MP)1742.50.000000e+00969/982 (98%)

  18. Novel September 2015 North Carolina Swine Matches Human Cases

    niman replied to niman's topic in Dr. Niman's Corner
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI653887A/swine/Iowa/A02025409/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI496411A/swine/Iowa/13C044/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI493674A/swine/Iowa/13C075/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI489662A/swine/Iowa/13C029/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI499965A/swine/Minnesota/A01365842/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI492946A/swine/Minnesota/A01365586/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI489704A/swine/Iowa/13C038/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI489688A/swine/Iowa/13C020/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI487961A/swine/Minnesota/A01365497/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI472522A/swine/Iowa/13A016/2013 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI510209A/swine/Illinois/A01411363/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI489696A/swine/Iowa/13C019/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001392/1411 (98%)EPI645154A/swine/Iowa/A01472644/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI506260A/swine/Illinois/A01393671/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI489654A/swine/Iowa/13C040/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001390/1412 (98%)EPI476517A/swine/Illinois/A01290325/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI530322A/swine/Illinois/A01410373/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI600372A/swine/Illinois/A01478295/2014 (A/H0) segment 6 (NA)2462.70.000000e+001384/1410 (98%)EPI620618A/swine/Iowa/A02077564/2015 (A/H1N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI573730A/swine/Illinois/A01567281/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI550291A/swine/Illinois/A01475803/2014 (A/H3N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI600396A/swine/Illinois/A01478325/2014 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI585995A/swine/Illinois/A01462759/2015 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI560133A/swine/Minnesota/A01566110/2014 (A/H1N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI367818A/swine/Minnesota/A01116200/2011 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI367817A/swine/Minnesota/A01116195/2011 (A/H3N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI620594A/swine/Iowa/A02077467/2015 (A/H1N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI600778A/swine/Illinois/A01567037/2014 (A/H3N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI585998A/swine/Illinois/A01462810/2015 (A/H3N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI338575A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI590663A/swine/Nebraska/A01841831/2015 (A/H1N2) segment 6 (NA)2446.10.000000e+001381/1410 (97%)EPI590645A/swine/Nebraska/A01841830/2015 (A/H1N2) segment 6 (NA)2446.10.000000e+001381/1410 (97%)EPI593949A/swine/Minnesota/A01469803/2015 (A/H1N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI623648A/swine/Iowa/A02076879/2015 (A/H0) segment 6 (NA)2436.90.000000e+001379/1410 (97%)EPI647511A/swine/Iowa/A02076932/2015 (A/H1N2) segment 6 (NA)2435.00.000000e+001379/1410 (97%)EPI641824A/swine/Illinois/A02024781/2015 (A/H0) segment 6 (NA)2435.00.000000e+001380/1411 (97%)EPI641391A/swine/Minnesota/A01472283/2015 (A/H1N2) segment 6 (NA)2405.50.000000e+001376/1412 (97%)EPI433291A/swine/Minnesota/A01280592/2013 (A/H3N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI324813A/swine/Iowa/A01049317/2010 (A/H3N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI397301A/swine/Minnesota/16/2012 (A/H3N2) segment 6 (NA)2388.80.000000e+001371/1410 (97%)EPI464429A/swine/Minnesota/A01351166/2013 (A/H1N2) segment 6 (NA)2383.30.000000e+001370/1410 (97%)EPI448825A/swine/Minnesota/A01349658/2013 (A/H3N2) segment 6 (NA)2383.30.000000e+001370/1410 (97%)EPI489261A/swine/Manitoba/02182/2008 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI399182A/swine/Minnesota/A01328452/2012 (A/H3N2) segment 6 (NA)2344.50.000000e+001364/1411 (96%)EPI488925A/swine/Georgia/02604/2009 (A/H3N2) segment 6 (NA)2339.00.000000e+001362/1410 (96%)EPI399350A/swine/Minnesota/A01328451/2012 (A/H3N2) segment 6 (NA)2339.00.000000e+001363/1411 (96%)EPI399203A/swine/Minnesota/A01125992/2012 (A/H3N2) segment 6 (NA)2339.00.000000e+001363/1411 (96%)EPI399029A/swine/Minnesota/A01125993/2012 (A/H3N2) segment 6 (NA)2339.00.000000e+001363/1411 (96%)EPI324814A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 6 (NA)2333.40.000000e+001361/1410 (96%)EPI383439A/swine/Minnesota/A01076193/2010 (A/H3N2) segment 6 (NA)2327.90.000000e+001361/1411 (96%)EPI314677A/swine/QC/414/2009 (A/H3N2) segment 6 (NA)2322.40.000000e+001359/1410 (96%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2316.80.000000e+001358/1410 (96%)EPI399293A/swine/Minnesota/A01327922/2012 (A/H3N2) segment 6 (NA)2316.80.000000e+001358/1410 (96%)EPI395734A/swine/Indiana/A01104030/2012 (A/H3N2) segment 6 (NA)2316.80.000000e+001358/1410 (96%)EPI383540A/swine/Minnesota/A01203517/2012 (A/H3N2) segment 6 (NA)2316.80.000000e+001358/1410 (96%)EPI509542A/swine/North Carolina/A01290805/2013 (A/H0) segment 6 (NA)2311.30.000000e+001358/1411 (96%)EPI509531A/swine/North Carolina/A01290797/2013 (A/H0) segment 6 (NA)2311.30.000000e+001358/1411 (96%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI399146A/swine/Minnesota/A01327921/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397387A/Indiana/49/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI397212A/Indiana/115/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI396245A/Indiana/125/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI396229A/Indiana/147/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI396222A/Indiana/57/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI394065A/Indiana/60/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI392710A/Indiana/60/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI392707A/Indiana/59/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI391437A/swine/Iowa/A01203248/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2311.30.000000e+001357/1410 (96%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI424075A/swine/Michigan/A01259003/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI416920A/swine/Minnesota/A01442411/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001357/1411 (96%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001357/1411 (96%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001357/1411 (96%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2305.70.000000e+001356/1410 (96%)EPI354963A/swine/Minnesota/A01076196/2010 (A/H3N2) segment 6 (NA)2305.70.000000e+001357/1411 (96%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2302.00.000000e+001355/1410 (96%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2302.00.000000e+001355/1410 (96%)EPI550137A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2300.20.000000e+001356/1411 (96%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397214A/Pennsylvania/17/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI397124A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI395942A/swine/Indiana/A00968373/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI395929A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI395893A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI395269A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI394076A/Wisconsin/27/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI394068A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI392754A/Indiana/14/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001356/1411 (96%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI391438A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI391390A/swine/Iowa/A01202906/2011 (A/H3N2) segment 6 (NA)2300.20.000000e+001356/1411 (96%)EPI391389A/swine/Iowa/A01202905/2011 (A/H3N2) segment 6 (NA)2300.20.000000e+001356/1411 (96%)EPI388331A/Utah/10/2012 (A/H3N2) segment 6 (NA)2300.20.000000e+001355/1410 (96%)EPI384269A/swine/Minnesota/A01201424/2010 (A/H3N2) segment 6 (NA)2300.20.000000e+001353/1407 (96%)EPI572990A/swine/Nebraska/A01555104/2014 (A/H0) segment 6 (NA)2294.70.000000e+001354/1410 (96%)EPI550081A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI546918A/swine/Indiana/13TOSU1054/2013 (A/H0) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI546892A/swine/Indiana/13TOSU1141/2013 (A/H0) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527842A/swine/Indiana/13TOSU1047/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527152A/swine/Indiana/13TOSU1048/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527135A/swine/Indiana/13TOSU1058/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527073A/swine/Indiana/13TOSU1045/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527050A/swine/Indiana/13TOSU1060/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527008A/swine/Indiana/13TOSU1056/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI527002A/swine/Indiana/13TOSU1049/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI526977A/swine/Indiana/13TOSU1052/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI526940A/swine/Indiana/13TOSU1044/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI526912A/swine/Indiana/13TOSU1053/2013 (A/H1N2) segment 6 (NA)2294.70.000000e+001355/1411 (96%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2294.70.000000e+001354/1410 (96%)

  19. Novel September 2015 North Carolina Swine Matches Human Cases

    niman replied to niman's topic in Dr. Niman's Corner
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI653886A/swine/Iowa/A02025409/2015 (A/H3N2) segment 4 (HA)3127.50.000000e+001698/1701 (99%)EPI499963A/swine/Minnesota/A01365842/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI496409A/swine/Iowa/13C044/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI489694A/swine/Iowa/13C019/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI487959A/swine/Minnesota/A01365497/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI645152A/swine/Iowa/A01472644/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI492944A/swine/Minnesota/A01365586/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI489702A/swine/Iowa/13C038/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI489686A/swine/Iowa/13C020/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI489660A/swine/Iowa/13C029/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI493671A/swine/Iowa/13C075/2013 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI489652A/swine/Iowa/13C040/2013 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI472520A/swine/Iowa/13A016/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001670/1700 (98%)EPI506259A/swine/Illinois/A01393671/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI476516A/swine/Illinois/A01290325/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI550290A/swine/Illinois/A01475803/2014 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1701 (97%)EPI530321A/swine/Illinois/A01410373/2014 (A/H3N2) segment 4 (HA)2941.00.000000e+001664/1701 (97%)EPI641826A/swine/Illinois/A02024781/2015 (A/H0) segment 4 (HA)2929.90.000000e+001661/1699 (97%)EPI600777A/swine/Illinois/A01567037/2014 (A/H3N2) segment 4 (HA)2929.90.000000e+001661/1699 (97%)EPI367794A/swine/Minnesota/A01116200/2011 (A/H3N2) segment 4 (HA)2928.10.000000e+001662/1701 (97%)EPI367793A/swine/Minnesota/A01116195/2011 (A/H3N2) segment 4 (HA)2928.10.000000e+001662/1701 (97%)EPI510208A/swine/Illinois/A01411363/2014 (A/H3N2) segment 4 (HA)2926.20.000000e+001661/1701 (97%)EPI600371A/swine/Illinois/A01478295/2014 (A/H0) segment 4 (HA)2917.00.000000e+001660/1701 (97%)EPI338543A/swine/Minnesota/A01049936/2011 (A/H3N2) segment 4 (HA)2911.40.000000e+001659/1701 (97%)EPI600395A/swine/Illinois/A01478325/2014 (A/H3N2) segment 4 (HA)2905.90.000000e+001659/1702 (97%)EPI573729A/swine/Illinois/A01567281/2014 (A/H3N2) segment 4 (HA)2883.70.000000e+001654/1701 (97%)EPI397299A/swine/Minnesota/16/2012 (A/H3N2) segment 4 (HA)2878.20.000000e+001654/1702 (97%)EPI324851A/swine/Iowa/A01049317/2010 (A/H3N2) segment 4 (HA)2867.10.000000e+001651/1701 (97%)EPI448823A/swine/Minnesota/A01349658/2013 (A/H3N2) segment 4 (HA)2856.00.000000e+001650/1702 (96%)EPI318095A/swine/Iowa/A01049113/2010 (A/H3N2) segment 4 (HA)2856.00.000000e+001651/1703 (96%)EPI317007A/swine/Iowa/A01049112/2010 (A/H3N2) segment 4 (HA)2856.00.000000e+001651/1703 (96%)EPI610359A/swine/Canada/MAFRI-17/2012 (A/H3N2) segment 4 (HA)2845.00.000000e+001647/1701 (96%)EPI585996A/swine/Illinois/A01462810/2015 (A/H3N2) segment 4 (HA)2845.00.000000e+001647/1701 (96%)EPI354991A/swine/Minnesota/A01076218/2010 (A/H3N2) segment 4 (HA)2843.10.000000e+001648/1702 (96%)EPI457160A/swine/Michigan/33261/2010 (A/H3N2) segment 4 (HA)2839.40.000000e+001647/1702 (96%)EPI338542A/swine/Nebraska/A01049937/2011 (A/H3N2) segment 4 (HA)2839.40.000000e+001649/1704 (96%)EPI585993A/swine/Illinois/A01462759/2015 (A/H3N2) segment 4 (HA)2833.90.000000e+001646/1702 (96%)EPI433289A/swine/Minnesota/A01280592/2013 (A/H3N2) segment 4 (HA)2833.90.000000e+001646/1702 (96%)EPI367714A/swine/Minnesota/A01240088/2011 (A/H3N2) segment 4 (HA)2833.90.000000e+001647/1703 (96%)EPI324844A/swine/Nebraska/A01049235/2010 (A/H3N2) segment 4 (HA)2833.90.000000e+001648/1704 (96%)EPI390916A/swine/Iowa/A01049119/2010 (A/H3N2) segment 4 (HA)2828.30.000000e+001645/1702 (96%)EPI367699A/swine/Minnesota/A01240095/2011 (A/H3N2) segment 4 (HA)2826.50.000000e+001645/1703 (96%)EPI489252A/swine/Manitoba/01782/2007 (A/H3N2) segment 4 (HA)2811.70.000000e+001642/1702 (96%)EPI383764A/swine/Iowa/A01203571/2012 (A/H3N2) segment 4 (HA)2806.20.000000e+001641/1702 (96%)EPI259504A/swine/Minnesota/03008/2010 (A/H3N2) segment 4 (HA)2795.10.000000e+001639/1702 (96%)EPI489259A/swine/Manitoba/02182/2008 (A/H3N2) segment 4 (HA)2780.30.000000e+001636/1701 (96%)EPI610362A/swine/Canada/MAFRI-27/2012 (A/H3N2) segment 4 (HA)2778.50.000000e+001639/1705 (96%)EPI406619A/swine/Minnesota/A01270872/2012 (A/H3N2) segment 4 (HA)2778.50.000000e+001636/1702 (96%)EPI390699A/swine/Illinois/A01076768/2010 (A/H3N2) segment 4 (HA)2778.50.000000e+001634/1699 (96%)EPI367790A/swine/Iowa/A01076632/2010 (A/H3N2) segment 4 (HA)2778.50.000000e+001636/1702 (96%)EPI367789A/swine/Iowa/A01076630/2010 (A/H3N2) segment 4 (HA)2778.50.000000e+001636/1702 (96%)EPI610407A/swine/Canada/MAFRI-3/2012 (A/H3N1) segment 4 (HA)2772.90.000000e+001639/1706 (96%)EPI408239A/swine/Minnesota/A01277201/2012 (A/H3N2) segment 4 (HA)2772.90.000000e+001635/1702 (96%)EPI488923A/swine/Georgia/02604/2009 (A/H3N2) segment 4 (HA)2763.70.000000e+001633/1701 (96%)EPI414100A/swine/Minnesota/A01279722/2012 (A/H3N2) segment 4 (HA)2761.90.000000e+001633/1702 (95%)EPI337441A/swine/Minnesota/00611/2005 (A/H3N2) segment 4 (HA)2761.90.000000e+001633/1702 (95%)EPI490235A/swine/Manitoba/00446/2005 (A/H3N2) segment 4 (HA)2756.30.000000e+001632/1702 (95%)EPI489182A/swine/Manitoba/00446/2005 (A/H3N2) segment 4 (HA)2756.30.000000e+001632/1702 (95%)EPI489189A/swine/British Columbia/00633/2005 (A/H3N2) segment 4 (HA)2750.80.000000e+001631/1702 (95%)EPI488564A/swine/Minnesota/SG1238/2005 (A/H3N2) segment 4 (HA)2750.80.000000e+001631/1702 (95%)EPI488557A/swine/Minnesota/SG1236/2005 (A/H3N2) segment 4 (HA)2750.80.000000e+001631/1702 (95%)EPI318106A/swine/Iowa/A01049185/2010 (A/H3N2) segment 4 (HA)2750.80.000000e+001631/1702 (95%)EPI378037A/swine/South Dakota/3/2012 (A/H3N2) segment 4 (HA)2745.20.000000e+001632/1704 (95%)EPI103199A/swine/Ontario/33853/2005 (A/H3N2) segment 4 (HA)2745.20.000000e+001630/1702 (95%)EPI103127A/Ontario/RV1273/2005 (A/H3N2) segment 4 (HA)2745.20.000000e+001630/1702 (95%)EPI490853A/swine/North Carolina/00950/2006 (A/H3N2) segment 4 (HA)2739.70.000000e+001629/1702 (95%)EPI490416A/swine/Iowa/SG1469/2004 (A/H3N2) segment 4 (HA)2739.70.000000e+001630/1703 (95%)EPI489203A/swine/Alberta/00805/2005 (A/H3N2) segment 4 (HA)2739.70.000000e+001630/1703 (95%)EPI489196A/swine/Alberta/SG1405/2005 (A/H3N2) segment 4 (HA)2739.70.000000e+001630/1703 (95%)EPI488550A/swine/North Carolina/SG1230/2005 (A/H3N2) segment 4 (HA)2739.70.000000e+001628/1701 (95%)EPI457162A/swine/Nebraska/9330/2006 (A/H3N2) segment 4 (HA)2739.70.000000e+001629/1702 (95%)EPI398133A/swine/Iowa/A01203771/2012 (A/H3N2) segment 4 (HA)2739.70.000000e+001629/1702 (95%)EPI384268A/swine/Minnesota/A01201424/2010 (A/H3N2) segment 4 (HA)2739.70.000000e+001628/1700 (95%)EPI314679A/swine/QC/414/2009 (A/H3N2) segment 4 (HA)2736.00.000000e+001631/1704 (95%)EPI615569A/swine/Illinois/01041/2006 (A/H3N2) segment 4 (HA)2734.20.000000e+001628/1702 (95%)EPI615486A/swine/Oklahoma/01033/2006 (A/H3N2) segment 4 (HA)2734.20.000000e+001629/1703 (95%)EPI489224A/swine/Manitoba/01179/2006 (A/H3N2) segment 4 (HA)2734.20.000000e+001628/1702 (95%)EPI314335A/turkey/BC/1529-3/2005 (A/H3N2) segment 4 (HA)2734.20.000000e+001628/1702 (95%)EPI390682A/swine/Minnesota/A01076193/2010 (A/H3N2) segment 4 (HA)2728.60.000000e+001627/1701 (95%)EPI229372A/turkey/OH/313053/2004 (A/H3N2) segment 4 (HA)2728.60.000000e+001627/1702 (95%)EPI103181A/swine/Manitoba/12707/2005 (A/H3N2) segment 4 (HA)2728.60.000000e+001628/1703 (95%)EPI103145A/swine/Alberta/14722/2005 (A/H3N2) segment 4 (HA)2728.60.000000e+001627/1702 (95%)EPI354961A/swine/Minnesota/A01076196/2010 (A/H3N2) segment 4 (HA)2724.90.000000e+001627/1702 (95%)EPI615641A/swine/North Carolina/00271/2004 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI490809A/swine/Quebec/01002/2006 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI490805A/swine/Quebec/01000/2006 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI490381A/swine/North Carolina/SG1464/2004 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI489217A/swine/Saskatchewan/01114/2006 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI289638A/swine/Minnesota/1300/2007 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI158876A/turkey/MN/366767/2005 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI101389A/turkey/Ohio/313053/04 (A/H3N2) segment 4 (HA)2723.10.000000e+001626/1702 (95%)EPI615646A/swine/Minnesota/01068/2006 (A/H3N2) segment 4 (HA)2717.50.000000e+001625/1702 (95%)EPI489210A/swine/Quebec/01001/2006 (A/H3N2) segment 4 (HA)2717.50.000000e+001625/1702 (95%)EPI337384A/swine/Nebraska/00722/2005 (A/H0) segment 4 (HA)2717.50.000000e+001626/1703 (95%)EPI457165A/swine/Iowa/11333/2006 (A/H3N2) segment 4 (HA)2712.00.000000e+001624/1702 (95%)EPI337545A/swine/Minnesota/00484/2005 (A/H3N2) segment 4 (HA)2712.00.000000e+001624/1702 (95%)EPI337349A/swine/Minnesota/01146/2006 (A/H3N2) segment 4 (HA)2712.00.000000e+001624/1702 (95%)EPI103217A/turkey/Ontario/31232/2005 (A/H3N2) segment 4 (HA)2712.00.000000e+001625/1703 (95%)EPI166252A/swine/Minnesota/SG-00234/2005 (A/H3N2) segment 4 (HA)2710.20.000000e+001616/1690 (95%)EPI168645A/turkey/Minnesota/366767/2005 (A/H3N2) segment 4 (HA)2706.50.000000e+001624/1703 (95%)EPI488167A/swine/North Carolina/SG1197/2004 (A/H3N2) segment 4 (HA)2700.90.000000e+001623/1703 (95%)EPI166278A/swine/Minnesota/SG-00242/2006 (A/H3N2) segment 4 (HA)2700.90.000000e+001617/1694 (95%)EPI227574A/turkey/NC/353568/2005 (A/H3N2) segment 4 (HA)2695.40.000000e+001622/1703 (95%)EPI168650A/turkey/North Carolina/353568/2005 (A/H3N2) segment 4 (HA)2695.40.000000e+001622/1703 (95%)EPI490122A/swine/Oklahoma/00518/2005 (A/H3N2) segment 4 (HA)2689.80.000000e+001620/1702 (95%)EPI489238A/swine/Manitoba/01643/2007 (A/H3N2) segment 4 (HA)2689.80.000000e+001622/1704 (95%)EPI489231A/swine/Manitoba/01642/2007 (A/H3N2) segment 4 (HA)2689.80.000000e+001622/1704 (95%)EPI488776A/swine/Minnesota/SG1293/2007 (A/H3N2) segment 4 (HA)2689.80.000000e+001621/1703 (95%)EPI488662A/swine/Illinois/01131/2006 (A/H3N2) segment 4 (HA)2689.80.000000e+001620/1702 (95%)EPI228922A/turkey/Illinois/2004 (A/H3N2) segment 4 (HA)2689.80.000000e+001621/1703 (95%)EPI222756A/swine/Minnesota/1145/2007 (A/H3N2) segment 4 (HA)2689.80.000000e+001620/1702 (95%)EPI182817A/swine/Quebec/4001/2005 (A/H3N2) segment 4 (HA)2689.80.000000e+001620/1702 (95%)EPI490687A/swine/Texas/SG1270/2007 (A/H3N2) segment 4 (HA)2684.30.000000e+001620/1703 (95%)EPI490542A/swine/North Carolina/01469/2007 (A/H3N2) segment 4 (HA)2684.30.000000e+001619/1702 (95%)EPI488790A/swine/Arkansas/SG1295/2008 (A/H3N2) segment 4 (HA)2684.30.000000e+001621/1704 (95%)EPI488783A/swine/Minnesota/SG1294/2007 (A/H3N2) segment 4 (HA)2684.30.000000e+001620/1703 (95%)EPI488733A/swine/North Carolina/SG1282/2007 (A/H0) segment 4 (HA)2684.30.000000e+001619/1702 (95%)EPI488529A/swine/Oklahoma/00518/2005 (A/H3N2) segment 4 (HA)2684.30.000000e+001619/1702 (95%)EPI337529A/swine/Minnesota/001332/2006 (A/H3N2) segment 4 (HA)2684.30.000000e+001619/1702 (95%)EPI225756A/swine/Minnesota/66853/2006 (A/H3N2) segment 4 (HA)2684.30.000000e+001618/1701 (95%)EPI225753A/swine/Minnesota/65767/2006 (A/H3N2) segment 4 (HA)2684.30.000000e+001620/1703 (95%)EPI222674A/swine/Oklahoma/008722/2007 (A/H3N2) segment 4 (HA)2678.80.000000e+001619/1703 (95%)EPI184448A/swine/North Carolina/R08-001877-D08-013371/2008 (A/H3N2) segment 4 (HA)2678.80.000000e+001618/1702 (95%)EPI222959A/swine/Minnesota/578/2007 (A/H3N2) segment 4 (HA)2673.20.000000e+001617/1702 (95%)EPI166258A/swine/Minnesota/SG-00236/2007 (A/H3N2) segment 4 (HA)2669.50.000000e+001608/1689 (95%)EPI98712A/swine/MI/PU243/04 (A/H3N1) segment 4 (HA)2669.50.000000e+001616/1702 (94%)EPI644520A/swine/Mexico/7773583/2010 (A/H3N2) segment 4 (HA)2667.70.000000e+001613/1697 (95%)EPI615495A/swine/Iowa/00568/2005 (A/H3N2) segment 4 (HA)2667.70.000000e+001617/1703 (94%)EPI488741A/swine/North Carolina/01930/2007 (A/H3N2) segment 4 (HA)2667.70.000000e+001617/1703 (94%)EPI337401A/swine/Minnesota/02782/2009 (A/H3N2) segment 4 (HA)2667.70.000000e+001617/1703 (94%)EPI103163A/swine/British Columbia/28103/2005 (A/H3N2) segment 4 (HA)2667.70.000000e+001618/1704 (94%)EPI166255A/swine/Minnesota/SG-00235/2007 (A/H3N2) segment 4 (HA)2665.80.000000e+001608/1690 (95%)EPI491857A/swine/Manitoba/01799/2007 (A/H3N2) segment 4 (HA)2662.10.000000e+001617/1704 (94%)EPI490444A/swine/Oklahoma/SG1473/2005 (A/H3N2) segment 4 (HA)2662.10.000000e+001615/1702 (94%)EPI314635A/swine/QC/2108-2/2009 (A/H3N2) segment 4 (HA)2662.10.000000e+001616/1703 (94%)EPI222910A/swine/Minnesota/7931/2007 (A/H3N2) segment 4 (HA)2662.10.000000e+001616/1703 (94%)EPI391375A/swine/Iowa/A01202906/2011 (A/H3N2) segment 4 (HA)2658.40.000000e+001614/1701 (94%)EPI391374A/swine/Iowa/A01202905/2011 (A/H3N2) segment 4 (HA)2658.40.000000e+001614/1701 (94%)EPI653089A/swine/Minnesota/D09-25104/2009 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI615626A/swine/Minnesota/01546/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI491865A/swine/Saskatchewan/01834/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001616/1704 (94%)EPI488832A/swine/North Carolina/SG1306/2008 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI488690A/swine/Texas/01822/2007 (A/H3N1) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI488627A/swine/North Carolina/01312/2006 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI457181A/swine/North Carolina/1026/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI457164A/swine/Ohio/9753/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI416820A/swine/Michigan/A01259002/2012 (A/H3N2) segment 4 (HA)2656.60.000000e+001617/1705 (94%)EPI337409A/swine/Minnesota/01862/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI324852A/swine/Minnesota/A01049346/2010 (A/H3N2) segment 4 (HA)2656.60.000000e+001616/1704 (94%)EPI225758A/swine/Minnesota/66960/2006 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI222961A/swine/Minnesota/761/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001615/1703 (94%)EPI222657A/swine/Minnesota/5947/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001616/1704 (94%)EPI128344A/Ontario/1252/2007 (A/H3N2) segment 4 (HA)2656.60.000000e+001614/1702 (94%)EPI490283A/swine/Mexico/SG1444/2011 (A/H3N2) segment 4 (HA)2651.10.000000e+001614/1703 (94%)EPI489808A/swine/Mexico/SG1444/2011 (A/H3N2) segment 4 (HA)2651.10.000000e+001614/1703 (94%)EPI644525A/swine/Mexico/8630459/2011 (A/H3N2) segment 4 (HA)2645.50.000000e+001609/1697 (94%)EPI488958A/swine/North Carolina/SG1338/2009 (A/H3N2) segment 4 (HA)2645.50.000000e+001613/1703 (94%)EPI457166A/swine/Winconsin/12627/2009 (A/H3N2) segment 4 (HA)2645.50.000000e+001612/1702 (94%)EPI653083A/swine/Minnesota/D09-23141-2/2009 (A/H3N2) segment 4 (HA)2640.00.000000e+001611/1702 (94%)EPI653068A/swine/Minnesota/D09-23141-5/2009 (A/H3N2) segment 4 (HA)2640.00.000000e+001611/1702 (94%)EPI653042A/swine/Minnesota/D09-23141-3/2009 (A/H3N2) segment 4 (HA)2640.00.000000e+001611/1702 (94%)EPI490514A/swine/North Carolina/01052/2006 (A/H3N2) segment 4 (HA)2640.00.000000e+001612/1703 (94%)EPI488797A/swine/Arkansas/SG1297/2008 (A/H3N2) segment 4 (HA)2640.00.000000e+001612/1703 (94%)EPI488762A/swine/Nebraska/01711/2007 (A/H3N2) segment 4 (HA)2640.00.000000e+001612/1703 (94%)EPI367785A/swine/Pennsylvania/A01047912/2010 (A/H3N2) segment 4 (HA)2640.00.000000e+001611/1702 (94%)EPI489147A/swine/Iowa/03734/2011 (A/H3N2) segment 4 (HA)2634.40.000000e+001611/1703 (94%)EPI399611A/swine/Pennsylvania/A01076779/2010 (A/H3N2) segment 4 (HA)2634.40.000000e+001610/1702 (94%)EPI399565A/swine/Pennsylvania/A01076777/2010 (A/H3N2) segment 4 (HA)2634.40.000000e+001610/1702 (94%)EPI309154A/swine/Pennsylvania/62170-3/2010 (A/H3N2) segment 4 (HA)2634.40.000000e+001610/1702 (94%)EPI309153A/swine/Pennsylvania/62170-1/2010 (A/H3N2) segment 4 (HA)2634.40.000000e+001610/1702 (94%)EPI598956A/swine/Canada/AHL5/2012 (A/H3N2) segment 4 (HA)2632.60.000000e+001610/1702 (94%)EPI598952A/swine/Canada/AHL1/2012 (A/H3N2) segment 4 (HA)2632.60.000000e+001609/1701 (94%)EPI314687A/swine/QC/1840-2/2009 (A/H3N2) segment 4 (HA)2630.70.000000e+001610/1702 (94%)EPI598954A/swine/Canada/AHL3/2012 (A/H3N2) segment 4 (HA)2628.90.000000e+001609/1702 (94%)EPI490528A/swine/North Carolina/01216/2006 (A/H3N2) segment 4 (HA)2628.90.000000e+001611/1704 (94%)EPI488634A/swine/North Carolina/01484/2006 (A/H3N2) segment 4 (HA)2628.90.000000e+001610/1703 (94%)EPI324849A/swine/Iowa/A01049254/2010 (A/H3N2) segment 4 (HA)2628.90.000000e+001610/1703 (94%)EPI314666A/swine/QC/1698-2/2009 (A/H3N2) segment 4 (HA)2628.90.000000e+001609/1702 (94%)EPI314665A/swine/QC/1698-1/2009 (A/H3N2) segment 4 (HA)2628.90.000000e+001609/1702 (94%)EPI598955A/swine/Canada/AHL4/2012 (A/H3N2) segment 4 (HA)2625.20.000000e+001608/1702 (94%)EPI361497A/swine/Illinois/A01047183/2010 (A/H3N2) segment 4 (HA)2625.20.000000e+001602/1692 (94%)EPI653049A/swine/Minnesota/D09-24462-1/2009 (A/H3N2) segment 4 (HA)2623.40.000000e+001608/1702 (94%)EPI491900A/swine/Manitoba/02946/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001610/1704 (94%)EPI457176A/swine/Ohio/10SW215/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415208A/swine/Ohio/10SW220/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415200A/swine/Ohio/10SW219/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415192A/swine/Ohio/10SW218/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415184A/swine/Ohio/10SW216/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415176A/swine/Ohio/10SW214/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415168A/swine/Ohio/10SW213/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415160A/swine/Ohio/10SW212/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415152A/swine/Ohio/10SW211/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415144A/swine/Ohio/10SW210/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415136A/swine/Ohio/10SW209/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415128A/swine/Ohio/10SW208/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415120A/swine/Ohio/10SW207/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415112A/swine/Ohio/10SW206/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415104A/swine/Ohio/10SW205/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415088A/swine/Ohio/10SW203/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415080A/swine/Ohio/10SW202/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415072A/swine/Ohio/10SW156/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415064A/swine/Ohio/10SW139/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415056A/swine/Ohio/10SW137/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415048A/swine/Ohio/10SW136/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415016A/swine/Ohio/10SW132/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415008A/swine/Ohio/10SW131/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI415000A/swine/Ohio/10SW128/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI414976A/swine/Ohio/10SW125/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI414960A/swine/Ohio/10SW121/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI367851A/swine/Minnesota/A01076999/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI353705A/swine/North Carolina/A01202766/2011 (A/H3N2) segment 4 (HA)2623.40.000000e+001608/1702 (94%)EPI314667A/swine/QC/1698-4/2009 (A/H3N2) segment 4 (HA)2623.40.000000e+001608/1702 (94%)EPI293965A/Minnesota/11/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001612/1706 (94%)EPI291872A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001608/1702 (94%)EPI291870A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001608/1702 (94%)EPI291865A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA)2623.40.000000e+001608/1702 (94%)EPI182824A/mink/Nova Scotia/1055488/2007 (A/H3N2) segment 4 (HA)2623.40.000000e+001609/1703 (94%)EPI598957A/swine/Canada/AHL8/2012 (A/H3N2) segment 4 (HA)2619.70.000000e+001608/1703 (94%)EPI361424A/swine/Illinois/A01047188/2010 (A/H3N2) segment 4 (HA)2619.70.000000e+001601/1692 (94%)EPI347613A/Pennsylvania/14/2010 (A/H3N2) segment 4 (HA)2619.70.000000e+001607/1702 (94%)EPI598959A/swine/Canada/AHL10/2012 (A/H3N2) segment 4 (HA)2617.80.000000e+001607/1702 (94%)EPI598958A/swine/Canada/AHL9/2012 (A/H3N2) segment 4 (HA)2617.80.000000e+001608/1703 (94%)EPI490591A/swine/Arkansas/02863/2009 (A/H3N2) segment 4 (HA)2617.80.000000e+001608/1703 (94%)EPI489273A/swine/Manitoba/SG1432/2008 (A/H3N2) segment 4 (HA)2617.80.000000e+001609/1704 (94%)EPI465400A/Minnesota/11/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI457177A/swine/Ohio/10SW130/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001613/1708 (94%)EPI415096A/swine/Ohio/10SW204/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI415040A/swine/Ohio/10SW135/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI415032A/swine/Ohio/10SW134/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI415024A/swine/Ohio/10SW133/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI414992A/swine/Ohio/10SW127/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI414984A/swine/Ohio/10SW126/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001612/1707 (94%)EPI414968A/swine/Ohio/10SW122/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI399515A/swine/Minnesota/A01240792/2012 (A/H3N2) segment 4 (HA)2617.80.000000e+001610/1705 (94%)EPI391396A/swine/Iowa/A01203104/2011 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI390887A/swine/Iowa/A01203459/2012 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI367697A/swine/Minnesota/A01134337/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI361495A/swine/Indiana/A00968322/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI361432A/swine/Minnesota/A01047396/2011 (A/H3N2) segment 4 (HA)2617.80.000000e+001607/1702 (94%)EPI314668A/swine/QC/1698-5/2009 (A/H3N2) segment 4 (HA)2617.80.000000e+001607/1702 (94%)EPI312980A/Pennsylvania/40/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI312689A/swine/Minnesota/239105/2009 (A/H3N2) segment 4 (HA)2617.80.000000e+001607/1702 (94%)EPI291898A/Wisconsin/12/2010 (A/H3N2) segment 4 (HA)2617.80.000000e+001611/1706 (94%)EPI457169A/swine/North Carolina/23592/2009 (A/H3N2) segment 4 (HA)2614.10.000000e+001607/1703 (94%)EPI491671A/swine/Nebraska/SG1178/2003 (A/H3N2) segment 4 (HA)2612.30.000000e+001610/1706 (94%)EPI488804A/swine/Arkansas/SG1298/2008 (A/H3N2) segment 4 (HA)2612.30.000000e+001607/1703 (94%)EPI391412A/swine/Iowa/A01203248/2012 (A/H3N2) segment 4 (HA)2612.30.000000e+001610/1706 (94%)EPI390827A/swine/Iowa/A01203304/2012 (A/H3N2) segment 4 (HA)2612.30.000000e+001610/1706 (94%)EPI383524A/swine/Iowa/A01203492/2012 (A/H3N2) segment 4 (HA)2612.30.000000e+001610/1706 (94%)EPI361505A/swine/Illinois/A01076719/2010 (A/H3N2) segment 4 (HA)2612.30.000000e+001610/1706 (94%)

  20. Novel September 2015 North Carolina Swine Matches Human Cases

    niman replied to niman's topic in Dr. Niman's Corner
    LOCUS KT924268 1701 bp cRNA linear VRL 14-NOV-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945244/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT924268 VERSION KT924268.1 GI:949601216 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945244/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945244/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (19-OCT-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945244/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945244/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1739958" /segment="4" /country="USA: North Carolina" /collection_date="24-Sep-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALN12301.1" /db_xref="GI:949601217" /translation="MKTIIAFSCILCQIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICSSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYASLRSLVASSGTLEFNQESFNWTGVAQDGSSNACRRESN KSFFSRLNWLYHLNNKYPALNVXMPNNDKFDKLYIWGVHHPGTDKDQTYLYVQAPGRV TISTRRSQQTVIPNVGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAPIDNCDSECITPNGSIPNDKPFQNVNRITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAITQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFERTKKQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDVYR DEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICV " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945244.4" ORIGIN 1 atgaagacta tcattgcttt cagctgcatt ttatgtcaaa ttttcgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctgggacacc atgcagtacc aaacgggacg 121 ttagtgaaga caatcacgga tgaccaaatt gaagtgacta atgctactga actggtccag 181 agttcctcaa caggtagaat atgcagcagt cctcatcaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggagaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccggat 361 tatgcctctc ttagatcact agttgcatca tccggtactc tggaatttaa ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagcaacg cttgcagaag ggaatctaat 481 aaaagttttt tcagtagatt gaattggttg tatcatttga ataacaaata tccagcgttg 541 aacgtaayta tgccaaacaa tgacaaattt gacaaattgt atatttgggg ggttcaccac 601 ccgggtacgg acaaggacca aacctaccta tatgtccaag caccagggag agttacaatc 661 tccaccagaa gaagccaaca aacagtaatc ccgaatgtcg ggtctaggcc ctgggtaagg 721 ggtgtctcca gcataataag catatattgg acaatagtaa aaccgggaga catacttttg 781 attaacagta cagggaatct aattgcccct cgaggttact tcaaaataca aagtgggaaa 841 agctcaataa tgaggtcaga tgcacctatt gacaactgcg attctgaatg tattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaggatcac atatggggcc 961 tgtcccagat atgttaagca aaacactctg aaattagcaa caggaatgcg aaatgtacca 1021 gagaaacaaa ctagaggcat attcggcgca atcgcagggt tcatagaaaa tggttgggag 1081 gggatggttg atggttggta tggtttcagg catcaaaatt ctgaaggcac agggcaagca 1141 gcagatctta aaagcactca agcagcaatc acccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcag atcgaaaaag aattctcaga agtggaaggg 1261 aggattcagg atctagagaa atacgttgaa gacactaaaa tagatctctg gtcttataac 1321 gcggagcttc ttgttgccct ggagaaccaa catacaattg atttgactga ctcagaaatg 1381 aacaaactgt tcgaaagaac aaaaaaacaa ctacgggaaa atgctgagga catgggcaat 1441 ggttgcttta aaatatatca caaatgtgac aatgcctgca taggatcaat cagaaatgga 1501 acttatgacc atgatgtata cagagacgag gcattaaaca atcgattcca gatcaaaggt 1561 gttcagctga aatcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg catgccagaa aggcaacatt 1681 aggtgcaaca tttgcgtttg a

  21. Novel September 2015 North Carolina Swine Matches Human Cases

    niman posted a topic in Dr. Niman's Corner
    USDA has released September 2015 North Carolina swine sequences which match 2010 H3 human cases and 2012 N2 human case with unique H1N1pdm09 MP sequences.

  22. September 2015 North Carolina Swine Match 2012 Cases

    niman replied to niman's topic in Dr. Niman's Corner
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI559526A/swine/North Carolina/A01476510/2014 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545857A/swine/North Carolina/A01476420/2014 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545151A/swine/North Carolina/A01476110/2014 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542443A/swine/North Carolina/A01476193/2014 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509549A/swine/North Carolina/A01290890/2013 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI504857A/swine/North Carolina/A01290932/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI502751A/swine/North Carolina/A01290790/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI502706A/swine/North Carolina/A01290891/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI669188A/swine/Indiana/A01260948/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI620622A/swine/Michigan/A02077465/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI620536A/swine/Indiana/A01554793/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI600430A/swine/North Carolina/A01476925/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI600390A/swine/Ohio/A01476936/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI597654A/swine/North Carolina/A01476855/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI593915A/swine/Indiana/A01840392/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI586141A/swine/Indiana/A01840859/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI586049A/swine/Iowa/A01840762/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI584813A/swine/Ohio/A01840938/2015 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI573295A/swine/Indiana/A01260713/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI568692A/swine/Indiana/A01260720/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI559553A/swine/North Carolina/A01466487/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI559544A/swine/Indiana/A01476558/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI558912A/swine/Indiana/A01260699/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI545415A/swine/North Carolina/A01476317/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI538995A/swine/United State/A01410955/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI545848A/swine/North Carolina/A01476349/2014 (A/H1N2) segment 7 (MP)1788.70.000000e+00977/982 (99%)EPI663608A/swine/Indiana/A01260943/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI641830A/swine/Indiana/A02025102/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI623671A/swine/Indiana/A01554928/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI623653A/swine/Illinois/A02076874/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620528A/swine/Iowa/A02077538/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620525A/swine/Iowa/A02076873/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI586058A/swine/Indiana/A01840825/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI584786A/swine/North Carolina/A01840982/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI573737A/swine/Indiana/A01260717/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI573713A/swine/Kansas/14-032475/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI572993A/swine/North Carolina/A01840086/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI548280A/swine/North Carolina/A01476467/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI545412A/swine/North Carolina/A01476343/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542559A/swine/North Carolina/A01476080/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542556A/swine/North Carolina/A01411888/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI542467A/swine/North Carolina/A01476202/2014 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI508915A/swine/Oklahoma/A01409770/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI459635A/swine/North Carolina/A01432728/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI398670A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI663388A/swine/North Carolina/A02025581/2015 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI641833A/swine/Indiana/A02025101/2015 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI620589A/swine/Arkansas/A02077488/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI600361A/swine/North Carolina/A01477834/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI600343A/swine/North Carolina/A01477803/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI584739A/swine/Indiana/A01840956/2015 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI573721A/swine/Kansas/14-032900/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI568721A/swine/Arkansas/A01840239/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI545403A/swine/North Carolina/A01476254/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542562A/swine/North Carolina/A01476107/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542535A/swine/North Carolina/A01476108/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542529A/swine/North Carolina/A01477103/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542473A/swine/North Carolina/A01476173/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531070A/swine/North Carolina/A01410522/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531055A/swine/North Carolina/A01410564/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531004A/swine/North Carolina/A01410562/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530271A/swine/North Carolina/A01475223/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502736A/swine/North Carolina/A01290889/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499742A/swine/North Carolina/A01290721/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI446486A/swine/Iowa/A01432529/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI558844A/swine/North Carolina/A01477778/2014 (A/H0) segment 7 (MP)1777.60.000000e+00974/982 (99%)EPI663330A/swine/North Carolina/A01770259/2015 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI653990A/swine/Indiana/A01260890/2015 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI653031A/swine/Indiana/A01260893/2015 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI530289A/swine/North Carolina/A01410500/2014 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI467459A/swine/North Carolina/A01432948/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397543A/Ohio/83/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI530262A/swine/North Carolina/A01410501/2014 (A/H1N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI671797A/swine/North Carolina/A01945071/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00975/983 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531043A/swine/North Carolina/A01410563/2014 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI499548A/swine/Iowa/A01365906/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492948A/swine/Iowa/A01365608/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492438A/swine/Iowa/A01364803/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487880A/swine/Iowa/A01365406/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI401145A/swine/North Carolina/A01270509/2012 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1768.40.000000e+00973/981 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI530308A/swine/North Carolina/A01410321/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI528435A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI502660A/swine/Minnesota/A01409450/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI499733A/swine/North Carolina/A01290777/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI461427A/swine/Ohio/11SW233/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI461420A/swine/Ohio/11SW149/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI461386A/swine/Ohio/11SW238/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459607A/swine/Ohio/11SW144/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459599A/swine/Ohio/11SW121/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459591A/swine/Ohio/11SW127/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459573A/swine/Ohio/11SW230/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459535A/swine/Ohio/11SW349/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459520A/swine/Ohio/11SW223/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459499A/swine/Ohio/11SW111/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459488A/swine/Ohio/11SW133/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459466A/swine/Ohio/11SW344/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457158A/swine/Korea/CY03-19/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457150A/swine/Korea/CY03-18/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457142A/swine/Korea/CY03-17/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457134A/swine/Korea/CY03-16/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457126A/swine/Korea/CY03-15/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457118A/swine/Korea/CY03-14/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI453452A/swine/Iowa/A01432659/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI453430A/swine/Korea/D79/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446730A/swine/Ohio/A01349559/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)

  23. September 2015 North Carolina Swine Match 2012 Cases

    niman replied to niman's topic in Dr. Niman's Corner
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI647570A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI663335A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI623704A/swine/Indiana/A01260882/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001392/1411 (98%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI669237A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI623652A/swine/Illinois/A02076874/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI620524A/swine/Iowa/A02076873/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001391/1411 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI669225A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI669210A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI620527A/swine/Iowa/A02077538/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001390/1411 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001390/1411 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001390/1411 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001390/1411 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001390/1411 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2484.90.000000e+001388/1410 (98%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2484.90.000000e+001389/1411 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001389/1411 (98%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001389/1411 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001388/1411 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2477.50.000000e+001388/1411 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI647585A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI573600A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI550081A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI546918A/swine/Indiana/13TOSU1054/2013 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI546892A/swine/Indiana/13TOSU1141/2013 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001387/1411 (98%)EPI545417A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001387/1411 (98%)EPI531098A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001387/1411 (98%)EPI527842A/swine/Indiana/13TOSU1047/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI527152A/swine/Indiana/13TOSU1048/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI527135A/swine/Indiana/13TOSU1058/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI527073A/swine/Indiana/13TOSU1045/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI527050A/swine/Indiana/13TOSU1060/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI527008A/swine/Indiana/13TOSU1056/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI527002A/swine/Indiana/13TOSU1049/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI526977A/swine/Indiana/13TOSU1052/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI526940A/swine/Indiana/13TOSU1044/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI526912A/swine/Indiana/13TOSU1053/2013 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI468208A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI468200A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI465419A/Indiana/17/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)

  24. September 2015 North Carolina Swine Match 2012 Cases

    niman replied to niman's topic in Dr. Niman's Corner
    DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3120.10.000000e+001697/1701 (99%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3116.40.000000e+001696/1701 (99%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3088.70.000000e+001691/1701 (99%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)3079.50.000000e+001689/1701 (99%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3079.50.000000e+001689/1701 (99%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001690/1702 (99%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3073.90.000000e+001688/1701 (99%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1701 (99%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3051.80.000000e+001682/1698 (99%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001682/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001681/1699 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001683/1702 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001681/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3024.10.000000e+001679/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3024.10.000000e+001679/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395251A/Indiana/152/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001676/1702 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2996.40.000000e+001673/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2996.40.000000e+001673/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)

  25. September 2015 North Carolina Swine Match 2012 Cases

    niman replied to niman's topic in Dr. Niman's Corner
    LOCUS KT924271 1701 bp cRNA linear VRL 14-NOV-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT924271 VERSION KT924271.1 GI:949601223 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (19-OCT-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945243/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1739957" /segment="4" /country="USA: North Carolina" /collection_date="24-Sep-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALN12305.1" /db_xref="GI:949601224" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRGSV NSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPSIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945243.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agctcctcaa caggtagaat atgcaatagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcatac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac ccaagaaagt 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag gggttctgtt 481 aacagtttct ttagtagatt gaattggttg tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaatcta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgagtatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggttg acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa atttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaac 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca aatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

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