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Everything posted by niman
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Semen studies on Ebola survivors include PCR positives 9 months post infection.
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DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662741A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI662720A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI662713A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI662706A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI662692A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620461A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620447A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620440A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620433A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620426A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620419A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI620412A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI590689A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI587637A/chicken/Iowa/04-20/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI662734A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI662727A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI662685A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI620454A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590744A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590737A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590723A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI590716A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI569366A/turkey/Washington/61-22/2014 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI662748A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI662698A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586554A/chicken/BC/FAV24/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586538A/chicken/BC/FAV22/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586522A/chicken/BC/FAV20/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI586514A/poultry/BC/FAV19/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585671A/baikal teal/Korea/2417/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585670A/baikal teal/Korea/2416/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585669A/baikal teal/Korea/2414/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585667A/baikal teal/Korea/2403/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585666A/baikal teal/Korea/2402/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585664A/baikal teal/Korea/1458/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585663A/baikal teal/Korea/1457/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585660A/baikal teal/Korea/1452/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585657A/baikal teal/Korea/1447/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585656A/baikal teal/Korea/1446/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585655A/baikal teal/Korea/1445/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585653A/baikal teal/Korea/1437/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI585096A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI576474A/chicken/BC/FAV8/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569394A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569387A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569363A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI569361A/chicken/Washington/61-9/2014 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI568703A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI568700A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561713A/broiler duck/Korea/H31/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561701A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561694A/common teal/Korea/H455-30/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561685A/tundra swan/Korea/H411/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561678A/bean goose/Korea/H328/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561671A/mallard/Korea/H297/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561664A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561657A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561630A/mallard/Korea/H207/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561623A/breeder duck/Korea/H200/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561574A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561560A/Coot/Korea/H81/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561553A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561533A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561519A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561345A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI561200A/broiler duck/Korea/H29/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI542634A/mallard/Korea/W452/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI509757A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI509712A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI590730A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590709A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI587525A/American wigeon/BC/050-31/2015 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586562A/chicken/BC/FAV25/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586546A/chicken/BC/FAV23/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586530A/chicken/BC/FAV21/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI586505A/poultry/BC/FAV17/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585668A/baikal teal/Korea/2406/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585665A/baikal teal/Korea/2399/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585661A/baikal teal/Korea/1454/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585659A/baikal teal/Korea/1449/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585658A/baikal teal/Korea/1448/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI585654A/baikal teal/Korea/1441/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI584083A/turkey/BC/FAV14/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI573175A/Chicken/Netherlands/14015824/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI573166A/chicken/Netherlands/14015766/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561650A/breeder duck/Korea/H249/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561609A/broiler duck/Korea/H145/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561602A/broiler duck/Korea/H133/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561595A/breeder duck/Korea/H128/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561581A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561546A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561364A/bean goose/Korea/H40/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561357A/broiler duck/Korea/H48/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561352A/broiler duck/Korea/H47/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI561191A/waterfowl/Korea/S005/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI554604A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI553471A/wigeon/Sakha/1/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI552750A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI548628A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI548428A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 8 (NS)1532.00.000000e+00835/838 (99%)
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DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662710A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI662745A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI662702A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI662689A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590741A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI662738A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI662731A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI662724A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620458A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620451A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620437A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620430A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620423A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620416A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI620409A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI590720A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI590713A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI573299A/turkey/BC/FAV10/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI662717A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI662695A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI620444A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI590700A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI590686A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI587634A/chicken/Iowa/04-20/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586527A/chicken/BC/FAV21/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586519A/chicken/BC/FAV20/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586502A/poultry/BC/FAV17/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI576471A/chicken/BC/FAV8/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI569384A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI569365A/turkey/Washington/61-22/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586559A/chicken/BC/FAV25/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI586543A/chicken/BC/FAV23/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI586535A/chicken/BC/FAV22/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI586510A/poultry/BC/FAV19/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI586494A/poultry/BC/FAV15/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI584080A/turkey/BC/FAV14/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI576478A/chicken/BC/FAV9/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI662682A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI590734A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI586551A/chicken/BC/FAV24/2014 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI573277A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI573272A/chicken/Washington/61-9/2014 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI590727A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 5 (NP)2721.20.000000e+001489/1497 (99%)EPI590693A/chicken/Washington/3490-18/2015 (A/H5N2) segment 5 (NP)2721.20.000000e+001489/1497 (99%)EPI585093A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 5 (NP)2721.20.000000e+001489/1497 (99%)EPI526421A/American green-winged teal/Ohio/13OS2086/2013 (A/H6N8) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI526348A/American green-winged teal/Ohio/13OS2084/2013 (A/H6N8) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI616371A/blue-winged teal/Illinois/12OS2929/2012 (A/H3N8) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512353A/mallard/Illinois/11OS4420/2011 (A/H2N3) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI513134A/mallard/Wisconsin/11OS4085/2011 (A/H0) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI512973A/blue-winged teal/Wisconsin/11OS3052/2011 (A/H3N2) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI512391A/northern pintail/Illinois/11OS4796/2011 (A/H5N3) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI512368A/northern shoveler/Illinois/11OS4707/2011 (A/H4N6) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI616435A/mallard/Illinois/12OS5130/2012 (A/H1N1) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI616391A/northern shoveler/Illinois/12OS5138/2012 (A/H1N1) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI616291A/blue-winged teal/Ohio/12OS4593/2012 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI513005A/northern shoveler/Wisconsin/11OS4110/2011 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI526332A/American green-winged teal/Ohio/13OS2060/2013 (A/H6N8) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI512695A/mallard/Wisconsin/11OS4309/2011 (A/H4N6) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI616346A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI512616A/mallard/Wisconsin/11OS4310/2011 (A/H4N6) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI418744A/wood duck/Wisconsin/10OS2778/2010 (A/H3N8) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI418737A/mallard/Wisconsin/10OS2773/2010 (A/H3N8) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI616351A/blue-winged teal/Illinois/12OS2986/2012 (A/H3N8) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI616186A/blue-winged teal/Ohio/12OS2229/2012 (A/H3N6) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI596207A/mallard/Maryland/13OS3035/2014 (A/H10N7) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI585180A/redhead/Ohio/13OS0406/2013 (A/H7N3) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI512928A/mallard/Illinois/11OS4121/2011 (A/H6N2) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI616467A/mallard/Illinois/12OS5080/2012 (A/H5N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI512749A/northern shoveler/Wisconsin/11OS3013/2011 (A/H4N8) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI449581A/green-winged teal/Minnesota/Sg-01000/2008 (A/H3N6) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI449553A/mallard/Minnesota/Sg-00930/2008 (A/H11N9) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI419628A/mallard/Missouri/10MO084/2010 (A/H5N9) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI594842A/mallard/Maryland/13OS3019/2014 (A/H0) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI475450A/northern shoveler/Minnesota/Sg-00655/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI468600A/northern shoveler/Minnesota/Sg-00651/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI450064A/red-necked grebe/Minnesota/AI10-2528/2010 (A/H4N8) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI449397A/northern shoveler/Minnesota/Sg-00665/2008 (A/H0) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI448589A/mallard/Minnesota/Sg-00620/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI419491A/northern shoverl/Mississippi/11OS145/2011 (A/H7N9) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI418903A/blue-winged teal/Wisconsin/10OS2862/2010 (A/H3N2) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI334171A/mallard/Illinois/3974/2009 (A/H5N2) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI468579A/mallard/Minnesota/Sg-00627/2008 (A/H1N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI468414A/mallard/Minnesota/Sg-00628/2008 (A/H1N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI433780A/blue-winged teal/Nova Scotia/00067/2010 (A/H0) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI419506A/American green-winged teal/Mississippi/11OS247/2011 (A/H0) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI334289A/blue-winged teal/Wisconsin/2753/2009 (A/H4N6) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI328603A/northern shoveler/California/9079/2008 (A/H4N4) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI328067A/northern shoveler/California/10024/2008 (A/H4N4) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI616200A/blue-winged teal/Ohio/12OS2244/2012 (A/H4N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI595979A/American black duck/Maryland/11OS3978/2012 (A/H2N1) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI595972A/American black duck/Maryland/11OS3898/2012 (A/H2N1) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI595958A/mallard/Maryland/11OS3829/2012 (A/H2N2) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI449387A/mallard/Minnesota/Sg-0617/2008 (A/H1N1) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI419169A/mallard/Wisconsin/10OS3866/2010 (A/H3N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI616227A/blue-winged teal/Ohio/12OS2123/2012 (A/H3N2) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI595965A/mallard/Maryland/11OS3833/2012 (A/H2N1) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI486895A/mallard/California/3471/2012 (A/H4N6) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI328083A/northern shoveler/California/9267/2008 (A/H4N6) segment 5 (NP)2604.90.000000e+001468/1497 (98%)EPI616113A/blue-winged teal/Ohio/12OS2154/2012 (A/H3N2) segment 5 (NP)2599.40.000000e+001467/1497 (97%)
-
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662673A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI662675A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 3 (PA)3967.70.000000e+002150/2151 (99%)EPI620404A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620403A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620402A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620401A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620400A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590476A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590475A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590472A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI590469A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI587639A/chicken/Iowa/04-20/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI662676A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI662674A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI662670A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI590473A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI662678A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI662677A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI662672A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI662671A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI662660A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI620399A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI620398A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI569362A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI569360A/chicken/Washington/61-9/2014 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590471A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI573280A/turkey/Washington/61-22/2014 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI590474A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586557A/chicken/BC/FAV25/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586541A/chicken/BC/FAV23/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586525A/chicken/BC/FAV21/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586508A/poultry/BC/FAV19/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI585107A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI569382A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI586533A/chicken/BC/FAV22/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI586517A/chicken/BC/FAV20/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI586500A/poultry/BC/FAV17/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI584078A/turkey/BC/FAV14/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI576173A/chicken/BC/FAV8/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI590470A/chicken/Washington/3490-18/2015 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586549A/chicken/BC/FAV24/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586492A/poultry/BC/FAV15/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI573292A/turkey/BC/FAV10/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI576174A/chicken/BC/FAV9/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI587520A/American wigeon/BC/050-31/2015 (A/H5N8) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI585103A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI569389A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI569370A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI569368A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI553207A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 3 (PA)3884.60.000000e+002135/2151 (99%)EPI588975A/duck/Taiwan/a068/2015 (A/H5N8) segment 3 (PA)3879.10.000000e+002132/2148 (99%)EPI588967A/chicken/Taiwan/a174/2015 (A/H5N3) segment 3 (PA)3879.10.000000e+002132/2148 (99%)EPI561686A/common teal/Korea/H455-30/2014 (A/H5N8) segment 3 (PA)3879.10.000000e+002134/2151 (99%)EPI588951A/goose/Taiwan/a015/2015 (A/H5N8) segment 3 (PA)3873.50.000000e+002132/2149 (99%)EPI585536A/baikal teal/Korea/2414/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585535A/baikal teal/Korea/2406/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585531A/baikal teal/Korea/1458/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585530A/baikal teal/Korea/1457/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585528A/baikal teal/Korea/1454/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585525A/baikal teal/Korea/1448/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585524A/baikal teal/Korea/1447/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585523A/baikal teal/Korea/1446/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI573637A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561712A/bean goose/Korea/H40/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561643A/tundra swan/Korea/H411/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561583A/broiler duck/Korea/H133/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561537A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561534A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561502A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561500A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561338A/broiler duck/Korea/H49/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI561334A/broiler duck/Korea/H47/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI509694A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI509693A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI585538A/baikal teal/Korea/2417/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585537A/baikal teal/Korea/2416/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585533A/baikal teal/Korea/2402/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585532A/baikal teal/Korea/2399/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585529A/baikal teal/Korea/1456/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561687A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561642A/bean goose/Korea/H328/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561640A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561588A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561587A/mallard/Korea/H207/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561586A/breeder duck/Korea/H200/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561584A/broiler duck/Korea/H145/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561582A/breeder duck/Korea/H128/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561501A/broiler duck/Korea/H65/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561335A/broiler duck/Korea/H48/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561333A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561193A/broiler duck/Korea/H31/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI561192A/broiler duck/Korea/H29/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI585534A/baikal teal/Korea/2403/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585527A/baikal teal/Korea/1452/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585526A/baikal teal/Korea/1449/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585522A/baikal teal/Korea/1445/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585521A/baikal teal/Korea/1441/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585520A/baikal teal/Korea/1437/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561641A/mallard/Korea/H297/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561639A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)
-
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662708A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 2 (PB1)4200.40.000000e+002274/2274 (100%)EPI590739A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI662736A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI662700A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI620407A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI662743A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI662715A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI620456A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI620435A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI620428A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI620421A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI620414A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI590698A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI590684A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI587631A/chicken/Iowa/04-20/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI586556A/chicken/BC/FAV25/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI586540A/chicken/BC/FAV23/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI586507A/poultry/BC/FAV19/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI584077A/turkey/BC/FAV14/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI573275A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI573270A/chicken/Washington/61-9/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI569364A/turkey/Washington/61-22/2014 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI662722A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI620442A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI590718A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI590711A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI590691A/chicken/Washington/3490-18/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI586516A/chicken/BC/FAV20/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI586499A/poultry/BC/FAV17/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI586491A/poultry/BC/FAV15/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI585090A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI576469A/chicken/BC/FAV8/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI569381A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 2 (PB1)4172.70.000000e+002269/2274 (99%)EPI662729A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI662693A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI662687A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI586548A/chicken/BC/FAV24/2014 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI586532A/chicken/BC/FAV22/2014 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI586524A/chicken/BC/FAV21/2014 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI576476A/chicken/BC/FAV9/2014 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI573297A/turkey/BC/FAV10/2014 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI590732A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI590725A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI620449A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI662680A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI420193A/bufflehead/California/3118/2011 (A/H4N8) segment 2 (PB1)4061.90.000000e+002249/2274 (98%)EPI418616A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 2 (PB1)4050.80.000000e+002247/2274 (98%)EPI512660A/wood duck/Wisconsin/11OS3443/2011 (A/H11N9) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI512230A/mallard/Arkansas/12OS179/2012 (A/H1N1) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI436582A/American green-winged teal/Interior Alaska/10BM05376R0/2010 (A/H3N8) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI418963A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 2 (PB1)4039.70.000000e+002245/2274 (98%)EPI453910A/northern pintail/Interior Alaska/10BM10298R0/2010 (A/H3N8) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI436612A/northern shoveler/Interior Alaska/10BM05487R0/2010 (A/H3N8) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI436589A/northern shoveler/Interior Alaska/10BM05382R0/2010 (A/H3N8) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI419953A/mallard/California/2559P/2011 (A/H5N8) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI419909A/mallard/California/2552V/2011 (A/H4N8) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI419869A/mallard/California/2542V/2011 (A/H5N1) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI419842A/mallard/California/2536P/2011 (A/H5N1) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI419835A/mallard/California/2535V/2011 (A/H5N1) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI419828A/mallard/California/2535P/2011 (A/H5N1) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI387181A/mallard/California/2396/2010 (A/H5N2) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI512474A/blue-winged teal/Missouri/11OS2563/2011 (A/H12N4) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI452523A/northern pintail/Interior Alaska/10BM12413R0/2010 (A/H8N4) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI451651A/mallard/Interior Alaska/10BM07575R0/2010 (A/H7N3) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI436619A/northern shoveler/Interior Alaska/10BM05491R0/2010 (A/H3N8) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI433197A/mallard/Interior Alaska/10BM04564R1/2010 (A/H7N3) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI420142A/mallard/California/2595V/2011 (A/H12N5) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI420135A/mallard/California/2595P/2011 (A/H12N5) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI420114A/mallard/California/2590V/2011 (A/H4N6) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI420087A/mallard/California/2584V/2011 (A/H4N9) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI420080A/mallard/California/2584P/2011 (A/H4N9) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419939A/mallard/California/2555V/2011 (A/H11N9) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419916A/mallard/California/2555P/2011 (A/H11N9) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419807A/mallard/California/2531V/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419794A/mallard/California/2531P/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI419786A/mallard/California/2527V/2011 (A/H5N1) segment 2 (PB1)4028.70.000000e+002243/2274 (98%)EPI420128A/mallard/California/2594V/2011 (A/H4N6) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420121A/mallard/California/2594P/2011 (A/H4N6) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420101A/mallard/California/2589V/2011 (A/H4N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420094A/mallard/California/2589P/2011 (A/H4N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI420073A/mallard/California/2578V/2011 (A/H0) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419855A/mallard/California/2536V/2011 (A/H5N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419821A/mallard/California/2533V/2011 (A/H4N6) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI419779A/mallard/California/2525P/2011 (A/H4N6) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI418440A/mallard/California/2525V/2011 (A/H0) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI398563A/chicken/Jalisco/12283/2012 (A/H7N3) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI616068A/northern shoveler/Ohio/12OS3173/2012 (A/H12N5) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI513088A/mallard/Wisconsin/11OS4104/2011 (A/H1N2) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI512676A/mallard/Wisconsin/11OS3468/2011 (A/H2N3) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419981A/mallard/California/2566P/2011 (A/H4N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419974A/mallard/California/2563V/2011 (A/H4N6) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419967A/mallard/California/2563P/2011 (A/H4N6) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI387271A/northern shoveler/California/3628/2011 (A/H10) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI527489A/blue-winged teal/TX/AI13-1028/2013 (A/H14N5) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI616276A/mallard/Ohio/12OS2351/2012 (A/H3N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI616160A/American green-winged teal/Ohio/12OS2128/2012 (A/H6N5) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI531395A/blue-winged teal/Guatemala/CIP049H105-15/2011 (A/H14N3) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI531387A/blue-winged teal/Guatemala/CIP049H106-62/2011 (A/H14N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI513151A/northern shoveler/Wisconsin/11OS4631/2011 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI512252A/northern shoveler/Mississippi/12OS231/2012 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)
-
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662707A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI662721A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI662699A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI590738A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI662704A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI662686A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620455A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620427A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620420A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620413A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI587630A/chicken/Iowa/04-20/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI662742A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI662735A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI662728A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI662679A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI620448A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI620441A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI620434A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI620406A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590724A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590683A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586531A/chicken/BC/FAV22/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586498A/poultry/BC/FAV17/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586490A/poultry/BC/FAV15/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573296A/turkey/BC/FAV10/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573279A/turkey/Washington/61-22/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573274A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI662714A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590731A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590717A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586555A/chicken/BC/FAV25/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586547A/chicken/BC/FAV24/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586539A/chicken/BC/FAV23/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586523A/chicken/BC/FAV21/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI585089A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI584076A/turkey/BC/FAV14/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI576475A/chicken/BC/FAV9/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI576468A/chicken/BC/FAV8/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI573269A/chicken/Washington/61-9/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569380A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569379A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590710A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI590697A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI586515A/chicken/BC/FAV20/2014 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI585081A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI569369A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI569367A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI586506A/poultry/BC/FAV19/2014 (A/H5N2) segment 1 (PB2)4174.50.000000e+002273/2280 (99%)EPI590690A/chicken/Washington/3490-18/2015 (A/H5N2) segment 1 (PB2)4172.70.000000e+002273/2280 (99%)EPI587519A/American wigeon/BC/050-31/2015 (A/H5N8) segment 1 (PB2)4172.70.000000e+002273/2280 (99%)EPI573283A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 1 (PB2)4167.20.000000e+002272/2280 (99%)EPI588949A/goose/Taiwan/a015/2015 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI553205A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585557A/baikal teal/Korea/2417/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585556A/baikal teal/Korea/2416/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585553A/baikal teal/Korea/2403/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585543A/baikal teal/Korea/1447/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585541A/baikal teal/Korea/1445/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561702A/bean goose/Korea/H40/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561672A/bean goose/Korea/H328/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561631A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561624A/mallard/Korea/H207/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561568A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561540A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561527A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561506A/bean goose/Korea/H53/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561358A/broiler duck/Korea/H49/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585554A/baikal teal/Korea/2406/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585551A/baikal teal/Korea/2399/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585550A/baikal teal/Korea/1458/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585548A/baikal teal/Korea/1456/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585546A/baikal teal/Korea/1452/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585545A/baikal teal/Korea/1449/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585544A/baikal teal/Korea/1448/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585539A/baikal teal/Korea/1437/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561610A/breeder duck/Korea/H158/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561603A/broiler duck/Korea/H145/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561575A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561561A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561513A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561353A/broiler duck/Korea/H48/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561339A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585555A/baikal teal/Korea/2414/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585549A/baikal teal/Korea/1457/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585542A/baikal teal/Korea/1446/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI585540A/baikal teal/Korea/1441/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI573635A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561679A/tundra swan/Korea/H411/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561665A/mallard/Korea/H297/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561651A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561644A/breeder duck/Korea/H249/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561596A/broiler duck/Korea/H133/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561589A/breeder duck/Korea/H128/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561554A/Coot/Korea/H81/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561547A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561520A/broiler duck/Korea/H65/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561346A/broiler duck/Korea/H47/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561201A/broiler duck/Korea/H31/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561194A/broiler duck/Korea/H29/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)EPI561185A/waterfowl/Korea/S005/2014 (A/H5N8) segment 1 (PB2)4122.80.000000e+002264/2280 (99%)
-
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662740A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662726A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662719A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662712A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662705A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662691A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620411A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590743A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590736A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590729A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590722A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590708A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI590688A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI568701A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI568698A/turkey/Washington/61-22/2014 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI568697A/chicken/Washington/61-9/2014 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662747A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662733A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662697A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620460A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620453A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620446A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620439A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620432A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620425A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620418A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590715A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI587636A/chicken/Iowa/04-20/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586561A/chicken/BC/FAV25/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586553A/chicken/BC/FAV24/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586521A/chicken/BC/FAV20/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI586504A/poultry/BC/FAV17/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585651A/baikal teal/Korea/2416/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585650A/baikal teal/Korea/2414/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585649A/baikal teal/Korea/2406/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585647A/baikal teal/Korea/2402/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585646A/baikal teal/Korea/2399/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585645A/baikal teal/Korea/1458/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585644A/baikal teal/Korea/1457/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585643A/baikal teal/Korea/1456/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585642A/baikal teal/Korea/1454/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585641A/baikal teal/Korea/1452/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585639A/baikal teal/Korea/1448/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585638A/baikal teal/Korea/1447/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585637A/baikal teal/Korea/1446/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585635A/baikal teal/Korea/1441/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585634A/baikal teal/Korea/1437/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI585087A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI584082A/turkey/BC/FAV14/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI576480A/chicken/BC/FAV9/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI576473A/chicken/BC/FAV8/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI573301A/turkey/BC/FAV10/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI569386A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561700A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561693A/common teal/Korea/H455-30/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561684A/tundra swan/Korea/H411/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561677A/bean goose/Korea/H328/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561670A/mallard/Korea/H297/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561656A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561649A/breeder duck/Korea/H249/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561636A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561629A/mallard/Korea/H207/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561622A/breeder duck/Korea/H200/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561601A/broiler duck/Korea/H133/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561594A/breeder duck/Korea/H128/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561580A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561573A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561566A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561559A/Coot/Korea/H81/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561552A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561532A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561525A/broiler duck/Korea/H65/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561511A/bean goose/Korea/H53/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561351A/broiler duck/Korea/H47/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561344A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561211A/broiler duck/Korea/H31/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561199A/broiler duck/Korea/H29/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI561190A/waterfowl/Korea/S005/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI553211A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI542633A/mallard/Korea/W452/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI517164A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509756A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509711A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662684A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI590695A/chicken/Washington/3490-18/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI587524A/American wigeon/BC/050-31/2015 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586545A/chicken/BC/FAV23/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586537A/chicken/BC/FAV22/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586529A/chicken/BC/FAV21/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586513A/poultry/BC/FAV19/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586496A/poultry/BC/FAV15/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585652A/baikal teal/Korea/2417/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585648A/baikal teal/Korea/2403/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585640A/baikal teal/Korea/1449/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585636A/baikal teal/Korea/1445/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585095A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573289A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573164A/chicken/Netherlands/14015766/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI569393A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568702A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)
-
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662746A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI662739A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI662725A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI662718A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI662711A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620410A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI590742A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI590687A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI662703A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI590721A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI662690A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI590714A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI662683A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620459A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620452A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620445A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620438A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620431A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620424A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI620417A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590735A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI590728A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI587635A/chicken/Iowa/04-20/2015 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI573282A/turkey/Washington/61-22/2014 (A/H5N2) segment 6 (NA)2588.30.000000e+001407/1410 (99%)EPI662732A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI662696A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI586544A/chicken/BC/FAV23/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI586511A/poultry/BC/FAV19/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI584081A/turkey/BC/FAV14/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI573278A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI573273A/chicken/Washington/61-9/2014 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI590701A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI586520A/chicken/BC/FAV20/2014 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI585094A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI586552A/chicken/BC/FAV24/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586528A/chicken/BC/FAV21/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586495A/poultry/BC/FAV15/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI569385A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586536A/chicken/BC/FAV22/2014 (A/H5N2) segment 6 (NA)2568.00.000000e+001403/1410 (99%)EPI586560A/chicken/BC/FAV25/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586503A/poultry/BC/FAV17/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI576479A/chicken/BC/FAV9/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI576472A/chicken/BC/FAV8/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI573300A/turkey/BC/FAV10/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI590694A/chicken/Washington/3490-18/2015 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI418959A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI512135A/northern pintail/Mississippi/12OS420/2012 (A/H0) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI450007A/blue-winged teal/Louisiana/AI09-5234/2009 (A/H11N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI418609A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI332004A/blue-winged teal/Guatemala/CIP049-10/2009 (A/H11N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI331988A/blue-winged teal/Guatemala/CIP049-03/2009 (A/H11N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI512150A/northern shoveler/Mississippi/12OS456/2012 (A/H14N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI420145A/northern shoveler/California/3676/2010 (A/H8N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI419288A/American wigeon/Iowa/10OS2748/2010 (A/H2N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI418807A/American green-winged teal/Illinois/10OS3589/2010 (A/H6N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI418497A/blue-winged teal/Illinois/10OS3610/2010 (A/H6N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI418472A/mallard/Illinois/10OS3245/2010 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI387177A/mallard/California/2396/2010 (A/H5N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI333605A/American green-winged teal/Mississippi/404/2010 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI331996A/blue-winged teal/Guatemala/CIP049-11/2009 (A/H11N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI512531A/gadwall/Mississippi/11OS6084/2011 (A/H11N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI512524A/northern shoveler/Mississippi/11OS6077/2011 (A/H11N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI418721A/mallard/Wisconsin/10OS2538/2010 (A/H3N2) segment 6 (NA)2449.80.000000e+001382/1410 (98%)EPI512591A/northern shoveler/Mississippi/11OS5875/2011 (A/H5N2) segment 6 (NA)2444.20.000000e+001381/1410 (97%)EPI419077A/mallard/Wisconsin/10OS3066/2010 (A/H6N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI616345A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI419118A/mallard/Mississippi/10OS4593/2010 (A/H1N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI221406A/American green-winged teal/California/HKWF609/2007 (A/H5N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI419654A/gadwall/Missouri/10MO0280/2010 (A/H5N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419647A/mallard/Missouri/10MO0253/2010 (A/H1N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419111A/gadwall/Mississippi/10OS4531/2010 (A/H6N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI419138A/northern shoveler/Mississippi/10OS4526/2010 (A/H6N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI413459A/mallard/Ohio/11OS2213/2011 (A/H11N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI328608A/northern shoveler/California/8855/2008 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI280744A/avian/Missouri/466554-6/2006 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI513011A/northern pintail/Wisconsin/11OS4111/2011 (A/H6N2) segment 6 (NA)2416.50.000000e+001377/1411 (97%)EPI328639A/mallard/California/11100/2008 (A/H11N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328582A/northern shoveler/California/9680/2008 (A/H6N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328476A/green-winged teal/California/11285/2008 (A/H0) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328156A/mallard/California/11353/2008 (A/H10N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI328489A/green-winged teal/California/7972/2008 (A/H6N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328108A/northern shoveler/California/9017/2008 (A/H11N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI419755A/northern shoveler/California/2815/2011 (A/H5N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI327900A/northern pintail/California/6791/2008 (A/H11N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI420032A/mallard/California/2571V/2011 (A/H0) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI420024A/mallard/California/2571P/2011 (A/H11N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI418643A/mallard/Illinois/10OS3249/2010 (A/H11N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI334262A/mallard/Iowa/3195/2009 (A/H0) segment 6 (NA)2399.90.000000e+001374/1411 (97%)EPI285601A/wild bird/Wisconsin/433163-1/2006 (A/H5N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI328316A/mallard/California/6420/2008 (A/H6N2) segment 6 (NA)2383.30.000000e+001371/1411 (97%)EPI442430A/brant/Alaska/44332-426/2007 (A/H10N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI285602A/wild bird/Wisconsin/439436-2/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI285592A/wild bird/Wisconsin/439436/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI299469A/American green-winged teal/Wisconsin/08OS2291/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI299389A/gadwall/Wisconsin/08OS2293/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI299381A/American green-winged teal/Wisconsin/08OS2292/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI280848A/wild bird/Minnesota/460613-12/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI449517A/mallard/Minnesota/Sg-00847/2008 (A/H0) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413390A/mallard/Ohio/10OS1470/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413383A/mallard/Ohio/10OS1469/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)
-
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662709A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI662744A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI662723A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI590740A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI662737A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI662701A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI620408A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI590726A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586550A/chicken/BC/FAV24/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586518A/chicken/BC/FAV20/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586509A/poultry/BC/FAV19/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI584079A/turkey/BC/FAV14/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI573298A/turkey/BC/FAV10/2014 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI586534A/chicken/BC/FAV22/2014 (A/H5N2) segment 4 (HA)3127.50.000000e+001700/1704 (99%)EPI662688A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI590733A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI590719A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI590685A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI586542A/chicken/BC/FAV23/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI586526A/chicken/BC/FAV21/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI586493A/poultry/BC/FAV15/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI585092A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI576470A/chicken/BC/FAV8/2014 (A/H5N2) segment 4 (HA)3125.70.000000e+001700/1704 (99%)EPI662716A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI590712A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI590699A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI590692A/chicken/Washington/3490-18/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI587633A/chicken/Iowa/04-20/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI586501A/poultry/BC/FAV17/2014 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI576477A/chicken/BC/FAV9/2014 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI573281A/turkey/Washington/61-22/2014 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI569383A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI586558A/chicken/BC/FAV25/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI573271A/chicken/Washington/61-9/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI662730A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI662694A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI620422A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI573276A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI620436A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI569390A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI569376A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI569372A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI620457A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI620450A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI620443A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI620415A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI587521A/American wigeon/BC/050-31/2015 (A/H5N8) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI585084A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI662681A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI620429A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI588968A/chicken/Taiwan/a174/2015 (A/H5N3) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI573638A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI588960A/duck/Taiwan/a043/2015 (A/H5N2) segment 4 (HA)3081.30.000000e+001692/1704 (99%)EPI573286A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 4 (HA)3081.30.000000e+001692/1704 (99%)EPI588976A/duck/Taiwan/a068/2015 (A/H5N8) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI553208A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA)3061.00.000000e+001687/1702 (99%)EPI573208A/gadwall/Korea/H1351/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI561570A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI588952A/goose/Taiwan/a015/2015 (A/H5N8) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI585595A/baikal teal/Korea/2417/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585589A/baikal teal/Korea/2399/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585586A/baikal teal/Korea/1456/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI573242A/Common Teal/Korea/H844/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561646A/breeder duck/Korea/H249/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561626A/mallard/Korea/H207/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561605A/broiler duck/Korea/H145/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561591A/breeder duck/Korea/H128/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561529A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561508A/bean goose/Korea/H53/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI561341A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI585594A/baikal teal/Korea/2416/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585592A/baikal teal/Korea/2406/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585591A/baikal teal/Korea/2403/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585590A/baikal teal/Korea/2402/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585582A/baikal teal/Korea/1448/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585581A/baikal teal/Korea/1447/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585579A/baikal teal/Korea/1445/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585577A/baikal teal/Korea/1437/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI573199A/breeder chicken/Korea/H1068/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI573197A/chicken/Korea/H881/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561674A/bean goose/Korea/H328/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561612A/breeder duck/Korea/H158/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561577A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561563A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561542A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI561522A/broiler duck/Korea/H65/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585593A/baikal teal/Korea/2414/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI585587A/baikal teal/Korea/1457/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI585584A/baikal teal/Korea/1452/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI585583A/baikal teal/Korea/1449/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561705A/bean goose/Korea/H40/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561667A/mallard/Korea/H297/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561653A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI561633A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI509704A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001686/1705 (98%)EPI585580A/baikal teal/Korea/1446/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001685/1705 (98%)EPI573200A/Korean native chicken/Korea/H1139/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001685/1705 (98%)EPI573196A/broiler duck/Korea/H651/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001685/1705 (98%)EPI573194A/breeder chicken/Korea/H818/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001685/1705 (98%)EPI561697A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001685/1705 (98%)
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Isolate name: A/turkey/North Dakota/15-013049-1/2015 Isolate ID: EPI_ISL_199549 Passage details/history: Type: A / H5N2 Lineage: Sample information Collection date: 2015-04-21 Host Turkey Additional host information: Domestic status: Is vaccinated: Location: United States / North Dakota / LaMoure County Additional location information: commercial; 12 week old Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Other Database Import Sample ID given by the submitting laboratory: Authors: Killian,M. Address: PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: NVSL 15-013049 EP1; Eurasian origin (EA-H5N8 clade 2.3.4.4)-North American reassortant Sequence segmentidentifierlengthaccession #INSDCSequence PB2 A/turkey/North Dakota/15-013049-1/2015 2287 EPI662707 KT762913 PB1 A/turkey/North Dakota/15-013049-1/2015 2290 EPI662708 KT762914 PA A/turkey/North Dakota/15-013049-1/2015 2182 EPI662673 KT762915 HA A/turkey/North Dakota/15-013049-1/2015 1744 EPI662709 KT762916 NP A/turkey/North Dakota/15-013049-1/2015 1524 EPI662710 KT762917 NA A/turkey/North Dakota/15-013049-1/2015 1426 EPI662711 KT762918 MP A/turkey/North Dakota/15-013049-1/2015 987 EPI662712 KT762919 NS A/turkey/North Dakota/15-013049-1/2015 850 EPI662713 KT762920 Submitter information Submitter: , EpiFluDB Submission Date: 2015-09-15 Last modifier: Pohlmann, Anne (EpiFlu Data Curator) Last modified: 2015-10-10
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APHIS releases Fujian H5N2 from LaMoure, A/turkey/North Dakota/15-013049-1/2015,
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Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662698A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 8 (NS)1548.60.000000e+00838/838 (100%)EPI662734A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 8 (NS)1543.10.000000e+00837/838 (99%)EPI662741A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI662720A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI662713A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI662706A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI662692A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620461A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620447A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620440A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620433A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620426A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620419A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI620412A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI590689A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI587637A/chicken/Iowa/04-20/2015 (A/H5N2) segment 8 (NS)1537.50.000000e+00836/838 (99%)EPI662727A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI662685A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI620454A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590744A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590737A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590723A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI590716A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI569366A/turkey/Washington/61-22/2014 (A/H5N2) segment 8 (NS)1532.00.000000e+00835/838 (99%)EPI662748A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI586554A/chicken/BC/FAV24/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI586538A/chicken/BC/FAV22/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI586522A/chicken/BC/FAV20/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI586514A/poultry/BC/FAV19/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585671A/baikal teal/Korea/2417/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585670A/baikal teal/Korea/2416/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585669A/baikal teal/Korea/2414/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585667A/baikal teal/Korea/2403/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585666A/baikal teal/Korea/2402/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585664A/baikal teal/Korea/1458/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585663A/baikal teal/Korea/1457/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585660A/baikal teal/Korea/1452/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585657A/baikal teal/Korea/1447/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585656A/baikal teal/Korea/1446/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585655A/baikal teal/Korea/1445/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585653A/baikal teal/Korea/1437/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI585096A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI576474A/chicken/BC/FAV8/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI569394A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI569387A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI569363A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI569361A/chicken/Washington/61-9/2014 (A/H5N2) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI568703A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI568700A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561713A/broiler duck/Korea/H31/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561701A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561694A/common teal/Korea/H455-30/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561685A/tundra swan/Korea/H411/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561678A/bean goose/Korea/H328/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561671A/mallard/Korea/H297/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561664A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561657A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561630A/mallard/Korea/H207/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561623A/breeder duck/Korea/H200/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561574A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561560A/Coot/Korea/H81/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561553A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561533A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561519A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561345A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI561200A/broiler duck/Korea/H29/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI542634A/mallard/Korea/W452/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI509757A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI509712A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 8 (NS)1526.50.000000e+00834/838 (99%)EPI590730A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI590709A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI587525A/American wigeon/BC/050-31/2015 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI586562A/chicken/BC/FAV25/2014 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI586546A/chicken/BC/FAV23/2014 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI586530A/chicken/BC/FAV21/2014 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI586505A/poultry/BC/FAV17/2014 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI585668A/baikal teal/Korea/2406/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI585665A/baikal teal/Korea/2399/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI585661A/baikal teal/Korea/1454/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI585659A/baikal teal/Korea/1449/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI585658A/baikal teal/Korea/1448/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI585654A/baikal teal/Korea/1441/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI584083A/turkey/BC/FAV14/2014 (A/H5N2) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI573175A/Chicken/Netherlands/14015824/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI573166A/chicken/Netherlands/14015766/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561650A/breeder duck/Korea/H249/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561609A/broiler duck/Korea/H145/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561602A/broiler duck/Korea/H133/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561595A/breeder duck/Korea/H128/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561581A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561546A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561364A/bean goose/Korea/H40/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561357A/broiler duck/Korea/H48/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561352A/broiler duck/Korea/H47/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI561191A/waterfowl/Korea/S005/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI554604A/turkey/Germany-NI/R3372/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI553471A/wigeon/Sakha/1/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI552750A/turkey/Germany/AR2485-86-L00899/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI548628A/chicken/Netherlands/14015531/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%)EPI548428A/turkey/Germany-MV/R2472/2014 (A/H5N8) segment 8 (NS)1520.90.000000e+00833/838 (99%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662695A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 5 (NP)2765.60.000000e+001497/1497 (100%)EPI662731A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620458A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620451A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620437A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620430A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620423A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI620416A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 5 (NP)2760.00.000000e+001496/1497 (99%)EPI662745A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI662702A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI662689A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI620444A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI590741A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI587634A/chicken/Iowa/04-20/2015 (A/H5N2) segment 5 (NP)2754.50.000000e+001495/1497 (99%)EPI662738A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI662724A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI620409A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590720A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI590713A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586543A/chicken/BC/FAV23/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI586510A/poultry/BC/FAV19/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI584080A/turkey/BC/FAV14/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI573299A/turkey/BC/FAV10/2014 (A/H5N2) segment 5 (NP)2748.90.000000e+001494/1497 (99%)EPI662717A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI590700A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI590686A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586551A/chicken/BC/FAV24/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586527A/chicken/BC/FAV21/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586519A/chicken/BC/FAV20/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI586502A/poultry/BC/FAV17/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI576471A/chicken/BC/FAV8/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI569384A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI569365A/turkey/Washington/61-22/2014 (A/H5N2) segment 5 (NP)2743.40.000000e+001493/1497 (99%)EPI662710A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586559A/chicken/BC/FAV25/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586535A/chicken/BC/FAV22/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI586494A/poultry/BC/FAV15/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI576478A/chicken/BC/FAV9/2014 (A/H5N2) segment 5 (NP)2737.90.000000e+001492/1497 (99%)EPI662682A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI590734A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI573277A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI573272A/chicken/Washington/61-9/2014 (A/H5N2) segment 5 (NP)2732.30.000000e+001491/1497 (99%)EPI590727A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI590693A/chicken/Washington/3490-18/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI585093A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 5 (NP)2726.80.000000e+001490/1497 (99%)EPI526421A/American green-winged teal/Ohio/13OS2086/2013 (A/H6N8) segment 5 (NP)2671.40.000000e+001480/1497 (98%)EPI526348A/American green-winged teal/Ohio/13OS2084/2013 (A/H6N8) segment 5 (NP)2671.40.000000e+001480/1497 (98%)EPI616371A/blue-winged teal/Illinois/12OS2929/2012 (A/H3N8) segment 5 (NP)2665.80.000000e+001479/1497 (98%)EPI513134A/mallard/Wisconsin/11OS4085/2011 (A/H0) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512973A/blue-winged teal/Wisconsin/11OS3052/2011 (A/H3N2) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512391A/northern pintail/Illinois/11OS4796/2011 (A/H5N3) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI512368A/northern shoveler/Illinois/11OS4707/2011 (A/H4N6) segment 5 (NP)2660.30.000000e+001478/1497 (98%)EPI616435A/mallard/Illinois/12OS5130/2012 (A/H1N1) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI616391A/northern shoveler/Illinois/12OS5138/2012 (A/H1N1) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI513005A/northern shoveler/Wisconsin/11OS4110/2011 (A/H4N6) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI512353A/mallard/Illinois/11OS4420/2011 (A/H2N3) segment 5 (NP)2654.80.000000e+001477/1497 (98%)EPI616291A/blue-winged teal/Ohio/12OS4593/2012 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI526332A/American green-winged teal/Ohio/13OS2060/2013 (A/H6N8) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI512695A/mallard/Wisconsin/11OS4309/2011 (A/H4N6) segment 5 (NP)2649.20.000000e+001476/1497 (98%)EPI616346A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI512616A/mallard/Wisconsin/11OS4310/2011 (A/H4N6) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI418744A/wood duck/Wisconsin/10OS2778/2010 (A/H3N8) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI418737A/mallard/Wisconsin/10OS2773/2010 (A/H3N8) segment 5 (NP)2643.70.000000e+001475/1497 (98%)EPI616351A/blue-winged teal/Illinois/12OS2986/2012 (A/H3N8) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI616186A/blue-winged teal/Ohio/12OS2229/2012 (A/H3N6) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI596207A/mallard/Maryland/13OS3035/2014 (A/H10N7) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI585180A/redhead/Ohio/13OS0406/2013 (A/H7N3) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI512928A/mallard/Illinois/11OS4121/2011 (A/H6N2) segment 5 (NP)2638.10.000000e+001474/1497 (98%)EPI616467A/mallard/Illinois/12OS5080/2012 (A/H5N1) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI512749A/northern shoveler/Wisconsin/11OS3013/2011 (A/H4N8) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI449581A/green-winged teal/Minnesota/Sg-01000/2008 (A/H3N6) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI449553A/mallard/Minnesota/Sg-00930/2008 (A/H11N9) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI419628A/mallard/Missouri/10MO084/2010 (A/H5N9) segment 5 (NP)2632.60.000000e+001473/1497 (98%)EPI594842A/mallard/Maryland/13OS3019/2014 (A/H0) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI475450A/northern shoveler/Minnesota/Sg-00655/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI468600A/northern shoveler/Minnesota/Sg-00651/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI450064A/red-necked grebe/Minnesota/AI10-2528/2010 (A/H4N8) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI449397A/northern shoveler/Minnesota/Sg-00665/2008 (A/H0) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI448589A/mallard/Minnesota/Sg-00620/2008 (A/H1N1) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI419491A/northern shoverl/Mississippi/11OS145/2011 (A/H7N9) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI418903A/blue-winged teal/Wisconsin/10OS2862/2010 (A/H3N2) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI334171A/mallard/Illinois/3974/2009 (A/H5N2) segment 5 (NP)2627.10.000000e+001472/1497 (98%)EPI468579A/mallard/Minnesota/Sg-00627/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI468414A/mallard/Minnesota/Sg-00628/2008 (A/H1N1) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI433780A/blue-winged teal/Nova Scotia/00067/2010 (A/H0) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI419506A/American green-winged teal/Mississippi/11OS247/2011 (A/H0) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI334289A/blue-winged teal/Wisconsin/2753/2009 (A/H4N6) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI328603A/northern shoveler/California/9079/2008 (A/H4N4) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI328067A/northern shoveler/California/10024/2008 (A/H4N4) segment 5 (NP)2621.50.000000e+001471/1497 (98%)EPI616200A/blue-winged teal/Ohio/12OS2244/2012 (A/H4N6) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595979A/American black duck/Maryland/11OS3978/2012 (A/H2N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595972A/American black duck/Maryland/11OS3898/2012 (A/H2N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI595958A/mallard/Maryland/11OS3829/2012 (A/H2N2) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI449387A/mallard/Minnesota/Sg-0617/2008 (A/H1N1) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI419169A/mallard/Wisconsin/10OS3866/2010 (A/H3N6) segment 5 (NP)2616.00.000000e+001470/1497 (98%)EPI616227A/blue-winged teal/Ohio/12OS2123/2012 (A/H3N2) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI595965A/mallard/Maryland/11OS3833/2012 (A/H2N1) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI486895A/mallard/California/3471/2012 (A/H4N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI328083A/northern shoveler/California/9267/2008 (A/H4N6) segment 5 (NP)2610.40.000000e+001469/1497 (98%)EPI616113A/blue-winged teal/Ohio/12OS2154/2012 (A/H3N2) segment 5 (NP)2604.90.000000e+001468/1497 (98%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662671A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 3 (PA)3973.30.000000e+002151/2151 (100%)EPI620404A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620403A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620402A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620401A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI620400A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI587639A/chicken/Iowa/04-20/2015 (A/H5N2) segment 3 (PA)3962.20.000000e+002149/2151 (99%)EPI662676A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI662675A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 3 (PA)3956.60.000000e+002148/2151 (99%)EPI662673A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI620399A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI620398A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590476A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590475A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590472A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI590469A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 3 (PA)3951.10.000000e+002147/2151 (99%)EPI662674A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI662670A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI590473A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 3 (PA)3945.60.000000e+002146/2151 (99%)EPI662678A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI662677A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI662672A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI662660A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI569362A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI569360A/chicken/Washington/61-9/2014 (A/H5N2) segment 3 (PA)3940.00.000000e+002145/2151 (99%)EPI590471A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI573280A/turkey/Washington/61-22/2014 (A/H5N2) segment 3 (PA)3934.50.000000e+002144/2151 (99%)EPI590474A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586557A/chicken/BC/FAV25/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586541A/chicken/BC/FAV23/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586525A/chicken/BC/FAV21/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586508A/poultry/BC/FAV19/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI585107A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI569382A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 3 (PA)3928.90.000000e+002143/2151 (99%)EPI586533A/chicken/BC/FAV22/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI586517A/chicken/BC/FAV20/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI586500A/poultry/BC/FAV17/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI584078A/turkey/BC/FAV14/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI576173A/chicken/BC/FAV8/2014 (A/H5N2) segment 3 (PA)3923.40.000000e+002142/2151 (99%)EPI590470A/chicken/Washington/3490-18/2015 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI586549A/chicken/BC/FAV24/2014 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI586492A/poultry/BC/FAV15/2014 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI573292A/turkey/BC/FAV10/2014 (A/H5N2) segment 3 (PA)3917.90.000000e+002141/2151 (99%)EPI576174A/chicken/BC/FAV9/2014 (A/H5N2) segment 3 (PA)3912.30.000000e+002140/2151 (99%)EPI587520A/American wigeon/BC/050-31/2015 (A/H5N8) segment 3 (PA)3906.80.000000e+002139/2151 (99%)EPI585103A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 3 (PA)3901.20.000000e+002138/2151 (99%)EPI569389A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI569370A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI569368A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 3 (PA)3895.70.000000e+002137/2151 (99%)EPI553207A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 3 (PA)3873.50.000000e+002133/2151 (99%)EPI588975A/duck/Taiwan/a068/2015 (A/H5N8) segment 3 (PA)3868.00.000000e+002130/2148 (99%)EPI588967A/chicken/Taiwan/a174/2015 (A/H5N3) segment 3 (PA)3868.00.000000e+002130/2148 (99%)EPI561686A/common teal/Korea/H455-30/2014 (A/H5N8) segment 3 (PA)3868.00.000000e+002132/2151 (99%)EPI588951A/goose/Taiwan/a015/2015 (A/H5N8) segment 3 (PA)3862.50.000000e+002130/2149 (99%)EPI585536A/baikal teal/Korea/2414/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585535A/baikal teal/Korea/2406/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585531A/baikal teal/Korea/1458/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585530A/baikal teal/Korea/1457/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585528A/baikal teal/Korea/1454/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585525A/baikal teal/Korea/1448/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585524A/baikal teal/Korea/1447/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585523A/baikal teal/Korea/1446/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI573637A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561712A/bean goose/Korea/H40/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561643A/tundra swan/Korea/H411/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561583A/broiler duck/Korea/H133/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561537A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561534A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561502A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561500A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561338A/broiler duck/Korea/H49/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI561334A/broiler duck/Korea/H47/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI509694A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI509693A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 3 (PA)3862.50.000000e+002131/2151 (99%)EPI585538A/baikal teal/Korea/2417/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585537A/baikal teal/Korea/2416/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585533A/baikal teal/Korea/2402/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585532A/baikal teal/Korea/2399/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585529A/baikal teal/Korea/1456/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561687A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561642A/bean goose/Korea/H328/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561640A/Korean native chicken/Korea/H257/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561588A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561587A/mallard/Korea/H207/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561586A/breeder duck/Korea/H200/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561584A/broiler duck/Korea/H145/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561582A/breeder duck/Korea/H128/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561501A/broiler duck/Korea/H65/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561335A/broiler duck/Korea/H48/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561333A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561193A/broiler duck/Korea/H31/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI561192A/broiler duck/Korea/H29/2014 (A/H5N8) segment 3 (PA)3856.90.000000e+002130/2151 (99%)EPI585534A/baikal teal/Korea/2403/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585527A/baikal teal/Korea/1452/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585526A/baikal teal/Korea/1449/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585522A/baikal teal/Korea/1445/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585521A/baikal teal/Korea/1441/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI585520A/baikal teal/Korea/1437/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561641A/mallard/Korea/H297/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%)EPI561639A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 3 (PA)3851.40.000000e+002129/2151 (98%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662693A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 2 (PB1)4200.40.000000e+002274/2274 (100%)EPI620456A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI620435A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI620428A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI620421A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI620414A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI587631A/chicken/Iowa/04-20/2015 (A/H5N2) segment 2 (PB1)4189.30.000000e+002272/2274 (99%)EPI620442A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 2 (PB1)4183.80.000000e+002271/2274 (99%)EPI662729A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 2 (PB1)4178.20.000000e+002270/2274 (99%)EPI662708A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI590739A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 2 (PB1)4167.20.000000e+002268/2274 (99%)EPI662736A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI662700A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI620449A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI620407A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 2 (PB1)4161.60.000000e+002267/2274 (99%)EPI662743A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI662715A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI590698A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI590684A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586556A/chicken/BC/FAV25/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586540A/chicken/BC/FAV23/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI586507A/poultry/BC/FAV19/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI584077A/turkey/BC/FAV14/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI573275A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI573270A/chicken/Washington/61-9/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI569364A/turkey/Washington/61-22/2014 (A/H5N2) segment 2 (PB1)4156.10.000000e+002266/2274 (99%)EPI662722A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI590718A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI590711A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI590691A/chicken/Washington/3490-18/2015 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI586516A/chicken/BC/FAV20/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI586499A/poultry/BC/FAV17/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI586491A/poultry/BC/FAV15/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI585090A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI576469A/chicken/BC/FAV8/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI569381A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 2 (PB1)4150.50.000000e+002265/2274 (99%)EPI662687A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI586548A/chicken/BC/FAV24/2014 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI586532A/chicken/BC/FAV22/2014 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI586524A/chicken/BC/FAV21/2014 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI576476A/chicken/BC/FAV9/2014 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI573297A/turkey/BC/FAV10/2014 (A/H5N2) segment 2 (PB1)4145.00.000000e+002264/2274 (99%)EPI590732A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 2 (PB1)4139.50.000000e+002263/2274 (99%)EPI590725A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 2 (PB1)4139.50.000000e+002263/2274 (99%)EPI662680A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 2 (PB1)4122.80.000000e+002260/2274 (99%)EPI420193A/bufflehead/California/3118/2011 (A/H4N8) segment 2 (PB1)4045.30.000000e+002246/2274 (98%)EPI418616A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 2 (PB1)4034.20.000000e+002244/2274 (98%)EPI512660A/wood duck/Wisconsin/11OS3443/2011 (A/H11N9) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI512230A/mallard/Arkansas/12OS179/2012 (A/H1N1) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI436582A/American green-winged teal/Interior Alaska/10BM05376R0/2010 (A/H3N8) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI418963A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 2 (PB1)4023.10.000000e+002242/2274 (98%)EPI453910A/northern pintail/Interior Alaska/10BM10298R0/2010 (A/H3N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI436612A/northern shoveler/Interior Alaska/10BM05487R0/2010 (A/H3N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI436589A/northern shoveler/Interior Alaska/10BM05382R0/2010 (A/H3N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419953A/mallard/California/2559P/2011 (A/H5N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419909A/mallard/California/2552V/2011 (A/H4N8) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419869A/mallard/California/2542V/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419842A/mallard/California/2536P/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419835A/mallard/California/2535V/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI419828A/mallard/California/2535P/2011 (A/H5N1) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI387181A/mallard/California/2396/2010 (A/H5N2) segment 2 (PB1)4017.60.000000e+002241/2274 (98%)EPI512474A/blue-winged teal/Missouri/11OS2563/2011 (A/H12N4) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI452523A/northern pintail/Interior Alaska/10BM12413R0/2010 (A/H8N4) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI451651A/mallard/Interior Alaska/10BM07575R0/2010 (A/H7N3) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI436619A/northern shoveler/Interior Alaska/10BM05491R0/2010 (A/H3N8) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI433197A/mallard/Interior Alaska/10BM04564R1/2010 (A/H7N3) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420142A/mallard/California/2595V/2011 (A/H12N5) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420135A/mallard/California/2595P/2011 (A/H12N5) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420114A/mallard/California/2590V/2011 (A/H4N6) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420087A/mallard/California/2584V/2011 (A/H4N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420080A/mallard/California/2584P/2011 (A/H4N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419939A/mallard/California/2555V/2011 (A/H11N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419916A/mallard/California/2555P/2011 (A/H11N9) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419807A/mallard/California/2531V/2011 (A/H5N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419794A/mallard/California/2531P/2011 (A/H5N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI419786A/mallard/California/2527V/2011 (A/H5N1) segment 2 (PB1)4012.00.000000e+002240/2274 (98%)EPI420128A/mallard/California/2594V/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420121A/mallard/California/2594P/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420101A/mallard/California/2589V/2011 (A/H4N1) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420094A/mallard/California/2589P/2011 (A/H4N1) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI420073A/mallard/California/2578V/2011 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI419855A/mallard/California/2536V/2011 (A/H5N1) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI419821A/mallard/California/2533V/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI419779A/mallard/California/2525P/2011 (A/H4N6) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI418440A/mallard/California/2525V/2011 (A/H0) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI398563A/chicken/Jalisco/12283/2012 (A/H7N3) segment 2 (PB1)4006.50.000000e+002239/2274 (98%)EPI616068A/northern shoveler/Ohio/12OS3173/2012 (A/H12N5) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI513088A/mallard/Wisconsin/11OS4104/2011 (A/H1N2) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI512676A/mallard/Wisconsin/11OS3468/2011 (A/H2N3) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI419981A/mallard/California/2566P/2011 (A/H4N8) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI419974A/mallard/California/2563V/2011 (A/H4N6) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI419967A/mallard/California/2563P/2011 (A/H4N6) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI387271A/northern shoveler/California/3628/2011 (A/H10) segment 2 (PB1)4001.00.000000e+002238/2274 (98%)EPI527489A/blue-winged teal/TX/AI13-1028/2013 (A/H14N5) segment 2 (PB1)3995.40.000000e+002237/2274 (98%)EPI616276A/mallard/Ohio/12OS2351/2012 (A/H3N6) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI616160A/American green-winged teal/Ohio/12OS2128/2012 (A/H6N5) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI531395A/blue-winged teal/Guatemala/CIP049H105-15/2011 (A/H14N3) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI531387A/blue-winged teal/Guatemala/CIP049H106-62/2011 (A/H14N6) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI513151A/northern shoveler/Wisconsin/11OS4631/2011 (A/H0) segment 2 (PB1)3989.90.000000e+002236/2274 (98%)EPI512252A/northern shoveler/Mississippi/12OS231/2012 (A/H0) segment 2 (PB1)3989.90.000000e+002236/2274 (98%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662704A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620455A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620427A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620420A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI620413A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI587630A/chicken/Iowa/04-20/2015 (A/H5N2) segment 1 (PB2)4211.50.000000e+002280/2280 (100%)EPI662728A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI662721A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI662699A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI620448A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI620441A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI620434A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI590738A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 1 (PB2)4205.90.000000e+002279/2280 (99%)EPI662686A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 1 (PB2)4200.40.000000e+002278/2280 (99%)EPI662742A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI662735A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI662707A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI662679A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI620406A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI590724A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI590683A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI586531A/chicken/BC/FAV22/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI586498A/poultry/BC/FAV17/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI586490A/poultry/BC/FAV15/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573296A/turkey/BC/FAV10/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573279A/turkey/Washington/61-22/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI573274A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 1 (PB2)4194.90.000000e+002277/2280 (99%)EPI662714A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590731A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590717A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586555A/chicken/BC/FAV25/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586547A/chicken/BC/FAV24/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586539A/chicken/BC/FAV23/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI586523A/chicken/BC/FAV21/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI585089A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI584076A/turkey/BC/FAV14/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI576475A/chicken/BC/FAV9/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI576468A/chicken/BC/FAV8/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI573269A/chicken/Washington/61-9/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI569380A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI569379A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 1 (PB2)4189.30.000000e+002276/2280 (99%)EPI590710A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI590697A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586515A/chicken/BC/FAV20/2014 (A/H5N2) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI585081A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569369A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI569367A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 1 (PB2)4183.80.000000e+002275/2280 (99%)EPI586506A/poultry/BC/FAV19/2014 (A/H5N2) segment 1 (PB2)4180.10.000000e+002274/2280 (99%)EPI590690A/chicken/Washington/3490-18/2015 (A/H5N2) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI587519A/American wigeon/BC/050-31/2015 (A/H5N8) segment 1 (PB2)4178.20.000000e+002274/2280 (99%)EPI573283A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 1 (PB2)4172.70.000000e+002273/2280 (99%)EPI588949A/goose/Taiwan/a015/2015 (A/H5N8) segment 1 (PB2)4145.00.000000e+002268/2280 (99%)EPI553205A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 1 (PB2)4145.00.000000e+002268/2280 (99%)EPI585557A/baikal teal/Korea/2417/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585556A/baikal teal/Korea/2416/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585553A/baikal teal/Korea/2403/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585543A/baikal teal/Korea/1447/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585541A/baikal teal/Korea/1445/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561702A/bean goose/Korea/H40/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561672A/bean goose/Korea/H328/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561631A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561624A/mallard/Korea/H207/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561568A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561540A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561527A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561506A/bean goose/Korea/H53/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI561358A/broiler duck/Korea/H49/2014 (A/H5N8) segment 1 (PB2)4139.50.000000e+002267/2280 (99%)EPI585554A/baikal teal/Korea/2406/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585551A/baikal teal/Korea/2399/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585550A/baikal teal/Korea/1458/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585548A/baikal teal/Korea/1456/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585546A/baikal teal/Korea/1452/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585545A/baikal teal/Korea/1449/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585544A/baikal teal/Korea/1448/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585539A/baikal teal/Korea/1437/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561610A/breeder duck/Korea/H158/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561603A/broiler duck/Korea/H145/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561575A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561561A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561513A/Baikal teal/Korea/H62/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561353A/broiler duck/Korea/H48/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI561339A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 1 (PB2)4133.90.000000e+002266/2280 (99%)EPI585555A/baikal teal/Korea/2414/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585549A/baikal teal/Korea/1457/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585542A/baikal teal/Korea/1446/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI585540A/baikal teal/Korea/1441/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI573635A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561679A/tundra swan/Korea/H411/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561665A/mallard/Korea/H297/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561651A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561644A/breeder duck/Korea/H249/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561596A/broiler duck/Korea/H133/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561589A/breeder duck/Korea/H128/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561554A/Coot/Korea/H81/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561547A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561520A/broiler duck/Korea/H65/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561346A/broiler duck/Korea/H47/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561201A/broiler duck/Korea/H31/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561194A/broiler duck/Korea/H29/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%)EPI561185A/waterfowl/Korea/S005/2014 (A/H5N8) segment 1 (PB2)4128.40.000000e+002265/2280 (99%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662733A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662697A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620460A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620453A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620446A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620439A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620432A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620425A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI620418A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI587636A/chicken/Iowa/04-20/2015 (A/H5N2) segment 7 (MP)1814.50.000000e+00982/982 (100%)EPI662740A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662726A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662719A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662712A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662705A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662691A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI620411A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590743A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590736A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590729A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590722A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590708A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI590688A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI568701A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI568698A/turkey/Washington/61-22/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI568697A/chicken/Washington/61-9/2014 (A/H5N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI662747A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI590715A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586561A/chicken/BC/FAV25/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586553A/chicken/BC/FAV24/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586521A/chicken/BC/FAV20/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI586504A/poultry/BC/FAV17/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585651A/baikal teal/Korea/2416/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585650A/baikal teal/Korea/2414/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585649A/baikal teal/Korea/2406/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585647A/baikal teal/Korea/2402/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585646A/baikal teal/Korea/2399/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585645A/baikal teal/Korea/1458/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585644A/baikal teal/Korea/1457/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585643A/baikal teal/Korea/1456/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585642A/baikal teal/Korea/1454/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585641A/baikal teal/Korea/1452/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585639A/baikal teal/Korea/1448/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585638A/baikal teal/Korea/1447/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585637A/baikal teal/Korea/1446/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585635A/baikal teal/Korea/1441/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585634A/baikal teal/Korea/1437/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI585087A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI584082A/turkey/BC/FAV14/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI576480A/chicken/BC/FAV9/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI576473A/chicken/BC/FAV8/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573301A/turkey/BC/FAV10/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI569386A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561700A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561693A/common teal/Korea/H455-30/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561684A/tundra swan/Korea/H411/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561677A/bean goose/Korea/H328/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561670A/mallard/Korea/H297/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561656A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561649A/breeder duck/Korea/H249/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561636A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561629A/mallard/Korea/H207/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561622A/breeder duck/Korea/H200/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561601A/broiler duck/Korea/H133/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561594A/breeder duck/Korea/H128/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561580A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561573A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561566A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561559A/Coot/Korea/H81/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561552A/Baikal teal/Korea/H80/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561532A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561525A/broiler duck/Korea/H65/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561511A/bean goose/Korea/H53/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561351A/broiler duck/Korea/H47/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561344A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561211A/broiler duck/Korea/H31/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561199A/broiler duck/Korea/H29/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI561190A/waterfowl/Korea/S005/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI553211A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542633A/mallard/Korea/W452/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI517164A/Chicken/Kumamoto/1-7/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509756A/baikal teal/Korea/Donglim3/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509711A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI662684A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI590695A/chicken/Washington/3490-18/2015 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI587524A/American wigeon/BC/050-31/2015 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586545A/chicken/BC/FAV23/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586537A/chicken/BC/FAV22/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586529A/chicken/BC/FAV21/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586513A/poultry/BC/FAV19/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586496A/poultry/BC/FAV15/2014 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585652A/baikal teal/Korea/2417/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585648A/baikal teal/Korea/2403/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585640A/baikal teal/Korea/1449/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585636A/baikal teal/Korea/1445/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI585095A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573289A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573164A/chicken/Netherlands/14015766/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI569393A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568702A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 7 (MP)1797.90.000000e+00979/982 (99%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI662732A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI662696A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI620459A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI620452A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI620445A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI620438A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI620431A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI620424A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI620417A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI587635A/chicken/Iowa/04-20/2015 (A/H5N2) segment 6 (NA)2599.40.000000e+001409/1410 (99%)EPI662746A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI662739A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI662725A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI662718A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI662711A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI620410A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI590742A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI590687A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI662703A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI590721A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI662690A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI590714A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586544A/chicken/BC/FAV23/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI586511A/poultry/BC/FAV19/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI584081A/turkey/BC/FAV14/2014 (A/H5N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI662683A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI590735A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI590728A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI590701A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586520A/chicken/BC/FAV20/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI585094A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI573282A/turkey/Washington/61-22/2014 (A/H5N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI586552A/chicken/BC/FAV24/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI586528A/chicken/BC/FAV21/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI586495A/poultry/BC/FAV15/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI573278A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI573273A/chicken/Washington/61-9/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI569385A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI586536A/chicken/BC/FAV22/2014 (A/H5N2) segment 6 (NA)2556.90.000000e+001401/1410 (99%)EPI586560A/chicken/BC/FAV25/2014 (A/H5N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI586503A/poultry/BC/FAV17/2014 (A/H5N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI576479A/chicken/BC/FAV9/2014 (A/H5N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI576472A/chicken/BC/FAV8/2014 (A/H5N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI573300A/turkey/BC/FAV10/2014 (A/H5N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI590694A/chicken/Washington/3490-18/2015 (A/H5N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI418959A/American green-winged teal/Wisconsin/10OS3127/2010 (A/H5N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI512135A/northern pintail/Mississippi/12OS420/2012 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI450007A/blue-winged teal/Louisiana/AI09-5234/2009 (A/H11N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI418609A/American green-winged teal/Mississippi/11OS98/2011 (A/H0) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI332004A/blue-winged teal/Guatemala/CIP049-10/2009 (A/H11N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI331988A/blue-winged teal/Guatemala/CIP049-03/2009 (A/H11N2) segment 6 (NA)2460.90.000000e+001384/1410 (98%)EPI512150A/northern shoveler/Mississippi/12OS456/2012 (A/H14N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI420145A/northern shoveler/California/3676/2010 (A/H8N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI419288A/American wigeon/Iowa/10OS2748/2010 (A/H2N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI418807A/American green-winged teal/Illinois/10OS3589/2010 (A/H6N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI418497A/blue-winged teal/Illinois/10OS3610/2010 (A/H6N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI418472A/mallard/Illinois/10OS3245/2010 (A/H0) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI387177A/mallard/California/2396/2010 (A/H5N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI333605A/American green-winged teal/Mississippi/404/2010 (A/H0) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI331996A/blue-winged teal/Guatemala/CIP049-11/2009 (A/H11N2) segment 6 (NA)2455.30.000000e+001383/1410 (98%)EPI512531A/gadwall/Mississippi/11OS6084/2011 (A/H11N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI512524A/northern shoveler/Mississippi/11OS6077/2011 (A/H11N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI418721A/mallard/Wisconsin/10OS2538/2010 (A/H3N2) segment 6 (NA)2438.70.000000e+001380/1410 (97%)EPI512591A/northern shoveler/Mississippi/11OS5875/2011 (A/H5N2) segment 6 (NA)2433.20.000000e+001379/1410 (97%)EPI419077A/mallard/Wisconsin/10OS3066/2010 (A/H6N2) segment 6 (NA)2427.60.000000e+001378/1410 (97%)EPI616345A/American green-winged teal/Mississippi/12OS5061/2012 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI419118A/mallard/Mississippi/10OS4593/2010 (A/H1N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI280744A/avian/Missouri/466554-6/2006 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI221406A/American green-winged teal/California/HKWF609/2007 (A/H5N2) segment 6 (NA)2422.10.000000e+001377/1410 (97%)EPI419654A/gadwall/Missouri/10MO0280/2010 (A/H5N2) segment 6 (NA)2416.50.000000e+001377/1411 (97%)EPI419647A/mallard/Missouri/10MO0253/2010 (A/H1N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI419111A/gadwall/Mississippi/10OS4531/2010 (A/H6N2) segment 6 (NA)2416.50.000000e+001376/1410 (97%)EPI419138A/northern shoveler/Mississippi/10OS4526/2010 (A/H6N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI413459A/mallard/Ohio/11OS2213/2011 (A/H11N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI328608A/northern shoveler/California/8855/2008 (A/H5N2) segment 6 (NA)2411.00.000000e+001375/1410 (97%)EPI513011A/northern pintail/Wisconsin/11OS4111/2011 (A/H6N2) segment 6 (NA)2405.50.000000e+001375/1411 (97%)EPI328639A/mallard/California/11100/2008 (A/H11N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI328582A/northern shoveler/California/9680/2008 (A/H6N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI328476A/green-winged teal/California/11285/2008 (A/H0) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI328156A/mallard/California/11353/2008 (A/H10N2) segment 6 (NA)2405.50.000000e+001374/1410 (97%)EPI328489A/green-winged teal/California/7972/2008 (A/H6N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI328108A/northern shoveler/California/9017/2008 (A/H11N2) segment 6 (NA)2399.90.000000e+001373/1410 (97%)EPI419755A/northern shoveler/California/2815/2011 (A/H5N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI418643A/mallard/Illinois/10OS3249/2010 (A/H11N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI327900A/northern pintail/California/6791/2008 (A/H11N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI285601A/wild bird/Wisconsin/433163-1/2006 (A/H5N2) segment 6 (NA)2394.40.000000e+001372/1410 (97%)EPI420032A/mallard/California/2571V/2011 (A/H0) segment 6 (NA)2388.80.000000e+001371/1410 (97%)EPI420024A/mallard/California/2571P/2011 (A/H11N2) segment 6 (NA)2388.80.000000e+001371/1410 (97%)EPI334262A/mallard/Iowa/3195/2009 (A/H0) segment 6 (NA)2388.80.000000e+001372/1411 (97%)EPI442430A/brant/Alaska/44332-426/2007 (A/H10N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI285602A/wild bird/Wisconsin/439436-2/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI285592A/wild bird/Wisconsin/439436/2006 (A/H5N2) segment 6 (NA)2377.80.000000e+001369/1410 (97%)EPI328316A/mallard/California/6420/2008 (A/H6N2) segment 6 (NA)2372.20.000000e+001369/1411 (97%)EPI299469A/American green-winged teal/Wisconsin/08OS2291/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI299389A/gadwall/Wisconsin/08OS2293/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI299381A/American green-winged teal/Wisconsin/08OS2292/2008 (A/H3N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI280848A/wild bird/Minnesota/460613-12/2006 (A/H5N2) segment 6 (NA)2372.20.000000e+001368/1410 (97%)EPI449517A/mallard/Minnesota/Sg-00847/2008 (A/H0) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413390A/mallard/Ohio/10OS1470/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%)EPI413383A/mallard/Ohio/10OS1469/2010 (A/H3N2) segment 6 (NA)2366.70.000000e+001367/1410 (96%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
AlignSegment-IDNameScoreE-ValueIdentityEPI662730A/chicken/Nebraska/15-017990-5/2015 (A/H5N2) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI662694A/chicken/Nebraska/15-017897-1/2015 (A/H5N2) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI620422A/chicken/Iowa/13542-2/2015 (A/H5N2) segment 4 (HA)3147.80.000000e+001704/1704 (100%)EPI620436A/turkey/Iowa/14319-1/2015 (A/H5N2) segment 4 (HA)3142.30.000000e+001703/1704 (99%)EPI620457A/chicken/Iowa/14589-1/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI620450A/chicken/Iowa/14399-4/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI620443A/chicken/Iowa/14322-6/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI620415A/turkey/Iowa/13541-1/2015 (A/H5N2) segment 4 (HA)3136.70.000000e+001702/1704 (99%)EPI620429A/turkey/Iowa/14318-1/2015 (A/H5N2) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI662744A/chicken/Wisconsin/15-012160-1/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI662723A/turkey/South Dakota/15-010371/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI590740A/turkey/Minnesota/9845-4/2015 (A/H5N2) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI662737A/chicken/Wisconsin/15-011595-1/2015 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI662701A/turkey/Wisconsin/15-012012-2/2015 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI620408A/turkey/Iowa/11762-1/2015 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI590726A/turkey/Arkansas/7791-1/2015 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI586550A/chicken/BC/FAV24/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI586518A/chicken/BC/FAV20/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI586509A/poultry/BC/FAV19/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI584079A/turkey/BC/FAV14/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI573298A/turkey/BC/FAV10/2014 (A/H5N2) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI662709A/turkey/North Dakota/15-013049-1/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI662688A/turkey/North Dakota/15-011420-13/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI590733A/chicken/Kansas/8395-3/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI590719A/turkey/Missouri/7458-1/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI590685A/turkey/Minnesota/9892-2/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI586542A/chicken/BC/FAV23/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI586534A/chicken/BC/FAV22/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001698/1705 (99%)EPI586526A/chicken/BC/FAV21/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI586493A/poultry/BC/FAV15/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI585092A/pheasant/Washington/3147-2/2015 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI576470A/chicken/BC/FAV8/2014 (A/H5N2) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI662716A/chicken/Minnesota/15-013533-1/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI590712A/turkey/Minnesota/7172-1/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI590699A/chicken/Oregon/A01819044/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI590692A/chicken/Washington/3490-18/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI587633A/chicken/Iowa/04-20/2015 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI586501A/poultry/BC/FAV17/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI576477A/chicken/BC/FAV9/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI573281A/turkey/Washington/61-22/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI569383A/Northern pintail/Washington/40964/2014 (A/H5N2) segment 4 (HA)3103.50.000000e+001697/1705 (99%)EPI586558A/chicken/BC/FAV25/2014 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI573271A/chicken/Washington/61-9/2014 (A/H5N2) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI573276A/domestic duck/Washington/61-16/2014 (A/H5N2) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI569390A/gyrfalcon/Washington/41088-6/2014 (A/H5N8) segment 4 (HA)3086.90.000000e+001694/1705 (99%)EPI569376A/guinea fowl/Oregon/41613-1/2014 (A/H5N8) segment 4 (HA)3086.90.000000e+001694/1705 (99%)EPI569372A/chicken/Oregon/41613-2/2014 (A/H5N8) segment 4 (HA)3086.90.000000e+001694/1705 (99%)EPI588968A/chicken/Taiwan/a174/2015 (A/H5N3) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI587521A/American wigeon/BC/050-31/2015 (A/H5N8) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI585084A/turkey/California/K1500169-1.2/2015 (A/H5N8) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI573638A/crane/Kagoshima/KU13/2014(H5N8) (A/H5N8) segment 4 (HA)3081.30.000000e+001693/1705 (99%)EPI662681A/chicken/Montana/15-010559-1/2015 (A/H5N2) segment 4 (HA)3075.80.000000e+001691/1704 (99%)EPI588960A/duck/Taiwan/a043/2015 (A/H5N2) segment 4 (HA)3075.80.000000e+001692/1705 (99%)EPI588976A/duck/Taiwan/a068/2015 (A/H5N8) segment 4 (HA)3064.70.000000e+001690/1705 (99%)EPI573286A/American green-winged teal/Washington/195750/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001690/1705 (99%)EPI553208A/crane/Kagoshima/KU1/2014 (A/H5N8) segment 4 (HA)3055.50.000000e+001687/1703 (99%)EPI573208A/gadwall/Korea/H1351/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001689/1706 (99%)EPI561570A/Baikal teal/Korea/H96/2014 (A/H5N8) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI588952A/goose/Taiwan/a015/2015 (A/H5N8) segment 4 (HA)3048.10.000000e+001687/1705 (98%)EPI585595A/baikal teal/Korea/2417/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI585589A/baikal teal/Korea/2399/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI585586A/baikal teal/Korea/1456/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI573242A/Common Teal/Korea/H844/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561646A/breeder duck/Korea/H249/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561626A/mallard/Korea/H207/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561605A/broiler duck/Korea/H145/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561591A/breeder duck/Korea/H128/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561529A/Baikal teal/Korea/H66/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561508A/bean goose/Korea/H53/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI561341A/Baikal teal/Korea/H41/2014 (A/H5N8) segment 4 (HA)3048.10.000000e+001688/1706 (98%)EPI585594A/baikal teal/Korea/2416/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585592A/baikal teal/Korea/2406/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585591A/baikal teal/Korea/2403/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585590A/baikal teal/Korea/2402/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585582A/baikal teal/Korea/1448/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585581A/baikal teal/Korea/1447/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585579A/baikal teal/Korea/1445/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585577A/baikal teal/Korea/1437/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI573199A/breeder chicken/Korea/H1068/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI573197A/chicken/Korea/H881/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561674A/bean goose/Korea/H328/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561612A/breeder duck/Korea/H158/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561577A/breeder chicken/Korea/H122/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561563A/Baikal teal/Korea/H84/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561542A/Baikal teal/Korea/H68/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI561522A/broiler duck/Korea/H65/2014 (A/H5N8) segment 4 (HA)3042.60.000000e+001687/1706 (98%)EPI585593A/baikal teal/Korea/2414/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585587A/baikal teal/Korea/1457/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585584A/baikal teal/Korea/1452/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585583A/baikal teal/Korea/1449/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561705A/bean goose/Korea/H40/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561667A/mallard/Korea/H297/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001687/1707 (98%)EPI561653A/breeder chicken/Korea/H250/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI561633A/white-fronted goose/Korea/H231/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI509704A/broiler duck/Korea/Buan2/2014 (A/H5N8) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI585580A/baikal teal/Korea/1446/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI573200A/Korean native chicken/Korea/H1139/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI573196A/broiler duck/Korea/H651/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI573194A/breeder chicken/Korea/H818/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%)EPI561697A/spot-billed duck/Korea/H455-42/2014 (A/H5N8) segment 4 (HA)3031.50.000000e+001685/1706 (98%) -
Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
Isolate detailIsolate name: A/chicken/Nebraska/15-017897-1/2015 Isolate ID: EPI_ISL_199547 Passage details/history: Type: A / H5N2 Lineage: Sample information Collection date: 2015-06-01 Host Gallus gallus Additional host information: backyard; hen Domestic status: Domestic Is vaccinated: Location: United States / Nebraska / Dixon County Additional location information: Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Other Database Import Sample ID given by the submitting laboratory: Authors: Killian,M. Address: PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence PB2 A/chicken/Nebraska/15-017897-1/2015 2280 EPI662704 KT762897 PB1 A/chicken/Nebraska/15-017897-1/2015 2274 EPI662693 KT762898 PA A/chicken/Nebraska/15-017897-1/2015 2151 EPI662671 KT762899 HA A/chicken/Nebraska/15-017897-1/2015 1744 EPI662694 KT762900 NP A/chicken/Nebraska/15-017897-1/2015 1524 EPI662695 KT762901 NA A/chicken/Nebraska/15-017897-1/2015 1410 EPI662696 KT762902 MP A/chicken/Nebraska/15-017897-1/2015 982 EPI662697 KT762903 NS A/chicken/Nebraska/15-017897-1/2015 850 EPI662698 KT762904 Submitter information Submitter: , EpiFluDB Submission Date: 2015-09-15 Last modifier: Pohlmann, Anne (EpiFlu Data Curator) Last modified: 2015-10-10 -
Released fileseditName Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date editNameIsolate IDSubtypePassagePB2PB1PAHANPNAMPNSHEP3Collection dateA/chicken/Wisconsin/15-012160-1/2015EPI_ISL_199554H5N2 228722902182174415241426987850------2015-04-13A/chicken/Wisconsin/15-011595-1/2015EPI_ISL_199553H5N2 228022742151170414971410982838------2015-04-08A/chicken/Nebraska/15-017990-5/2015EPI_ISL_199552H5N2 228022742151174415241410982850------2015-05-29A/turkey/South Dakota/15-010371/2015EPI_ISL_199551H5N2 228722902182174415241426987850------2015-03-30A/chicken/Minnesota/15-013533-1/2015EPI_ISL_199550H5N2 228722902182174415241426987850------2015-04-26A/turkey/North Dakota/15-013049-1/2015EPI_ISL_199549H5N2 228722902182174415241426987850------2015-04-21A/turkey/Wisconsin/15-012012-2/2015EPI_ISL_199548H5N2 228722902182174415241426987850------2015-04-14A/chicken/Nebraska/15-017897-1/2015EPI_ISL_199547H5N2 228022742151174415241410982850------2015-06-01A/turkey/North Dakota/15-011420-13/2015EPI_ISL_199546H5N2 228722902182174415241426987850------2015-04-10A/chicken/Montana/15-010559-1/2015EPI_ISL_199536H5N2 228722902182174415241426987850------2015-04-01
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Released fileseditName Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date editNameIsolate IDSubtypePassagePB2PB1PAHANPNAMPNSHEP3Collection dateA/chicken/Wisconsin/15-012160-1/2015EPI_ISL_199554H5N2 228722902182174415241426987850------2015-04-13A/chicken/Wisconsin/15-011595-1/2015EPI_ISL_199553H5N2 228022742151170414971410982838------2015-04-08A/chicken/Nebraska/15-017990-5/2015EPI_ISL_199552H5N2 228022742151174415241410982850------2015-05-29A/turkey/South Dakota/15-010371/2015EPI_ISL_199551H5N2 228722902182174415241426987850------2015-03-30A/chicken/Minnesota/15-013533-1/2015EPI_ISL_199550H5N2 228722902182174415241426987850------2015-04-26A/turkey/North Dakota/15-013049-1/2015EPI_ISL_199549H5N2 228722902182174415241426987850------2015-04-21A/turkey/Wisconsin/15-012012-2/2015EPI_ISL_199548H5N2 228722902182174415241426987850------2015-04-14A/chicken/Nebraska/15-017897-1/2015EPI_ISL_199547H5N2 228022742151174415241410982850------2015-06-01A/turkey/North Dakota/15-011420-13/2015EPI_ISL_199546H5N2 228722902182174415241426987850------2015-04-10A/chicken/Montana/15-010559-1/2015EPI_ISL_199536H5N2 228722902182174415241426987850------2015-04-01
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Released fileseditName Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date editNameIsolate IDSubtypePassagePB2PB1PAHANPNAMPNSHEP3Collection dateA/chicken/Wisconsin/15-012160-1/2015EPI_ISL_199554H5N2 228722902182174415241426987850------2015-04-13A/chicken/Wisconsin/15-011595-1/2015EPI_ISL_199553H5N2 228022742151170414971410982838------2015-04-08A/chicken/Nebraska/15-017990-5/2015EPI_ISL_199552H5N2 228022742151174415241410982850------2015-05-29A/turkey/South Dakota/15-010371/2015EPI_ISL_199551H5N2 228722902182174415241426987850------2015-03-30A/chicken/Minnesota/15-013533-1/2015EPI_ISL_199550H5N2 228722902182174415241426987850------2015-04-26A/turkey/North Dakota/15-013049-1/2015EPI_ISL_199549H5N2 228722902182174415241426987850------2015-04-21A/turkey/Wisconsin/15-012012-2/2015EPI_ISL_199548H5N2 228722902182174415241426987850------2015-04-14A/chicken/Nebraska/15-017897-1/2015EPI_ISL_199547H5N2 228022742151174415241410982850------2015-06-01A/turkey/North Dakota/15-011420-13/2015EPI_ISL_199546H5N2 228722902182174415241426987850------2015-04-10A/chicken/Montana/15-010559-1/2015EPI_ISL_199536H5N2 228722902182174415241426987850------2015-04-01
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Nebraska Fujian H5N2 Matches Novel Iowa Sub-clade
niman replied to niman's topic in Dr. Niman's Corner
editName Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date Released fileseditName Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date editNameIsolate IDSubtypePassagePB2PB1PAHANPNAMPNSHEP3Collection dateA/chicken/Wisconsin/15-012160-1/2015EPI_ISL_199554H5N2 228722902182174415241426987850------2015-04-13A/chicken/Wisconsin/15-011595-1/2015EPI_ISL_199553H5N2 228022742151170414971410982838------2015-04-08A/chicken/Nebraska/15-017990-5/2015EPI_ISL_199552H5N2 228022742151174415241410982850------2015-05-29A/turkey/South Dakota/15-010371/2015EPI_ISL_199551H5N2 228722902182174415241426987850------2015-03-30A/chicken/Minnesota/15-013533-1/2015EPI_ISL_199550H5N2 228722902182174415241426987850------2015-04-26A/turkey/North Dakota/15-013049-1/2015EPI_ISL_199549H5N2 228722902182174415241426987850------2015-04-21A/turkey/Wisconsin/15-012012-2/2015EPI_ISL_199548H5N2 228722902182174415241426987850------2015-04-14A/chicken/Nebraska/15-017897-1/2015EPI_ISL_199547H5N2 228022742151174415241410982850------2015-06-01A/turkey/North Dakota/15-011420-13/2015EPI_ISL_199546H5N2 228722902182174415241426987850------2015-04-10A/chicken/Montana/15-010559-1/2015EPI_ISL_199536H5N2 228722902182174415241426987850------2015-04-01