niman

LOCUS KT792914 1750 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/chicken/Gaza/803/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792914 VERSION KT792914.1 GI:938454694 KEYWORDS . SOURCE Influenza A virus (A/chicken/Gaza/803/2015(H5N1)) ORGANISM Influenza A virus (A/chicken/Gaza/803/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1750) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1750) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1750 /organism="Influenza A virus (A/chicken/Gaza/803/2015(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Gaza/803/2015" /serotype="H5N1" /host="chicken" /db_xref="taxon:1720086" /segment="4" /country="Israel" /collection_date="01-Jun-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33529.1" /db_xref="GI:938454695" /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgagtt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca 421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggaat tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca 1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaaccccc 1741 ttgtttctac

AlignSegment-IDNameScoreE-ValueIdentityEPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3075.80.000000e+001691/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3066.60.000000e+001689/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3055.50.000000e+001684/1699 (99%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3048.10.000000e+001686/1704 (98%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3016.70.000000e+001660/1674 (99%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3013.00.000000e+001659/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3011.20.000000e+001659/1674 (99%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001658/1674 (99%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)3000.10.000000e+001650/1663 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)3000.10.000000e+001650/1663 (99%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)2998.20.000000e+001655/1671 (99%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001676/1702 (98%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)2989.00.000000e+001675/1704 (98%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1704 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2977.90.000000e+001631/1640 (99%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2963.10.000000e+001670/1703 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2963.10.000000e+001670/1703 (98%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2961.30.000000e+001627/1639 (99%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2961.30.000000e+001670/1704 (98%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2961.30.000000e+001669/1702 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2961.30.000000e+001669/1702 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2961.30.000000e+001669/1703 (98%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001628/1641 (99%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001628/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001628/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2953.90.000000e+001627/1641 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)2950.20.000000e+001668/1704 (97%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2950.20.000000e+001664/1698 (97%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2950.20.000000e+001671/1707 (97%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001667/1703 (97%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2946.50.000000e+001626/1642 (99%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2946.50.000000e+001661/1694 (98%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2946.50.000000e+001659/1691 (98%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)2944.70.000000e+001667/1704 (97%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)2944.70.000000e+001668/1705 (97%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001668/1705 (97%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2942.80.000000e+001665/1701 (97%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001668/1705 (97%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2941.00.000000e+001660/1694 (97%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2941.00.000000e+001660/1694 (97%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2941.00.000000e+001658/1691 (98%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2935.40.000000e+001659/1694 (97%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2935.40.000000e+001665/1704 (97%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2933.60.000000e+001626/1644 (98%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2933.60.000000e+001665/1704 (97%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2933.60.000000e+001665/1704 (97%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2931.80.000000e+001667/1706 (97%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001667/1706 (97%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2929.90.000000e+001658/1694 (97%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2929.90.000000e+001654/1688 (97%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2928.10.000000e+001613/1627 (99%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2928.10.000000e+001664/1704 (97%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2926.20.000000e+001622/1641 (98%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001662/1701 (97%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001662/1701 (97%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2924.40.000000e+001661/1699 (97%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2920.70.000000e+001662/1702 (97%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2917.00.000000e+001667/1709 (97%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2917.00.000000e+001613/1630 (98%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2917.00.000000e+001659/1699 (97%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1706 (97%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2915.10.000000e+001652/1689 (97%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2915.10.000000e+001634/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2915.10.000000e+001634/1662 (98%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001652/1689 (97%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2915.10.000000e+001660/1701 (97%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001663/1706 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001659/1701 (97%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2905.90.000000e+001664/1708 (97%)EPI573334A/chicken/Egypt/141/2014 (A/H5N1) segment 4 (HA)2904.10.000000e+001645/1681 (97%)EPI573324A/duck/Egypt/1560S/2015 (A/H5N1) segment 4 (HA)2904.10.000000e+001601/1615 (99%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2904.10.000000e+001608/1626 (98%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI398573A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)

LOCUS KT792912 1725 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/chicken/Gaza/869/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792912 VERSION KT792912.1 GI:938454690 KEYWORDS . SOURCE Influenza A virus (A/chicken/Gaza/869/2015(H5N1)) ORGANISM Influenza A virus (A/chicken/Gaza/869/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1725) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1725) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1725 /organism="Influenza A virus (A/chicken/Gaza/869/2015(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Gaza/869/2015" /serotype="H5N1" /host="chicken" /db_xref="taxon:1720087" /segment="4" /country="Israel" /collection_date="27-Jun-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33527.1" /db_xref="GI:938454691" /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgagtt cctcaatgtg ccggagtggt cttacatagt ggagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca 421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca 1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattg

AlignSegment-IDNameScoreE-ValueIdentityEPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3061.00.000000e+001688/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3049.90.000000e+001683/1699 (99%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3011.20.000000e+001659/1674 (99%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3007.50.000000e+001658/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3005.60.000000e+001658/1674 (99%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001657/1674 (98%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)2994.50.000000e+001645/1657 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)2994.50.000000e+001649/1663 (99%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)2992.70.000000e+001654/1671 (98%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1704 (98%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)2977.90.000000e+001673/1704 (98%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2972.40.000000e+001630/1640 (99%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2966.80.000000e+001628/1639 (99%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001628/1641 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2957.60.000000e+001669/1703 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2957.60.000000e+001669/1703 (98%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2955.80.000000e+001669/1704 (97%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2955.80.000000e+001668/1703 (97%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2952.10.000000e+001627/1642 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)2944.70.000000e+001667/1704 (97%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2944.70.000000e+001663/1698 (97%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2944.70.000000e+001670/1707 (97%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001668/1705 (97%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001666/1703 (97%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001657/1689 (98%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001668/1705 (97%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2941.00.000000e+001660/1694 (97%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2941.00.000000e+001658/1691 (98%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2939.10.000000e+001627/1644 (98%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)2939.10.000000e+001666/1704 (97%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)2939.10.000000e+001667/1705 (97%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2937.30.000000e+001664/1701 (97%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2935.40.000000e+001659/1694 (97%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2935.40.000000e+001659/1694 (97%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2935.40.000000e+001655/1688 (98%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2931.80.000000e+001623/1641 (98%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2929.90.000000e+001658/1694 (97%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2929.90.000000e+001664/1704 (97%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2928.10.000000e+001664/1704 (97%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2928.10.000000e+001664/1704 (97%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2926.20.000000e+001666/1706 (97%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001666/1706 (97%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2924.40.000000e+001657/1694 (97%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2922.50.000000e+001612/1627 (99%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2922.50.000000e+001663/1704 (97%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001661/1701 (97%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001661/1701 (97%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2918.80.000000e+001660/1699 (97%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2915.10.000000e+001650/1686 (97%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2915.10.000000e+001661/1702 (97%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2911.40.000000e+001666/1709 (97%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2911.40.000000e+001608/1624 (99%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2911.40.000000e+001658/1699 (97%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2909.60.000000e+001663/1706 (97%)EPI573334A/chicken/Egypt/141/2014 (A/H5N1) segment 4 (HA)2909.60.000000e+001646/1681 (97%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2909.60.000000e+001633/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2909.60.000000e+001633/1662 (98%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001651/1689 (97%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001659/1701 (97%)EPI283799A/duck/Egypt/1011d/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001659/1701 (97%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2905.90.000000e+001607/1624 (98%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001662/1706 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2904.10.000000e+001658/1701 (97%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2900.40.000000e+001663/1708 (97%)EPI573324A/duck/Egypt/1560S/2015 (A/H5N1) segment 4 (HA)2898.50.000000e+001600/1615 (99%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001660/1705 (97%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001660/1705 (97%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001660/1705 (97%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001660/1705 (97%)

LOCUS KT792911 1750 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/chicken/Gaza/870/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792911 VERSION KT792911.1 GI:938454688 KEYWORDS . SOURCE Influenza A virus (A/chicken/Gaza/870/2015(H5N1)) ORGANISM Influenza A virus (A/chicken/Gaza/870/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1750) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1750) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1750 /organism="Influenza A virus (A/chicken/Gaza/870/2015(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Gaza/870/2015" /serotype="H5N1" /host="chicken" /db_xref="taxon:1720088" /segment="4" /country="Israel" /collection_date="24-Jun-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33526.1" /db_xref="GI:938454689" /translation="MEKMVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatggtact tcttcttgca atagccagta ttgtcaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgagtt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca 421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca 1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc 1741 ttgtttctac

AlignSegment-IDNameScoreE-ValueIdentityEPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3049.90.000000e+001686/1704 (98%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3038.90.000000e+001681/1699 (98%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3000.10.000000e+001657/1674 (98%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)2996.40.000000e+001656/1673 (98%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)2994.50.000000e+001656/1674 (98%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001655/1674 (98%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)2983.50.000000e+001647/1663 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)2983.50.000000e+001647/1663 (99%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001652/1671 (98%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)2972.40.000000e+001672/1704 (98%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)2966.80.000000e+001671/1704 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2961.30.000000e+001628/1640 (99%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2953.90.000000e+001627/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2953.90.000000e+001627/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2953.90.000000e+001627/1641 (99%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2948.40.000000e+001626/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2948.40.000000e+001626/1641 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2946.50.000000e+001667/1703 (97%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2946.50.000000e+001667/1703 (97%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2944.70.000000e+001624/1639 (99%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2944.70.000000e+001667/1704 (97%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2944.70.000000e+001666/1702 (97%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2944.70.000000e+001666/1702 (97%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2944.70.000000e+001666/1703 (97%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2942.80.000000e+001625/1641 (99%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2942.80.000000e+001625/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2942.80.000000e+001625/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001668/1705 (97%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001668/1705 (97%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2937.30.000000e+001624/1641 (98%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)2933.60.000000e+001665/1704 (97%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2933.60.000000e+001661/1698 (97%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2933.60.000000e+001668/1707 (97%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)2931.80.000000e+001664/1703 (97%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2929.90.000000e+001623/1642 (98%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2929.90.000000e+001658/1694 (97%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2929.90.000000e+001656/1691 (97%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)2928.10.000000e+001664/1704 (97%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)2928.10.000000e+001665/1705 (97%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2926.20.000000e+001662/1701 (97%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2924.40.000000e+001657/1694 (97%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2924.40.000000e+001657/1694 (97%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2924.40.000000e+001655/1691 (97%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2920.70.000000e+001664/1705 (97%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2918.80.000000e+001656/1694 (97%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2918.80.000000e+001662/1704 (97%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2917.00.000000e+001623/1644 (98%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2917.00.000000e+001662/1704 (97%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2917.00.000000e+001662/1704 (97%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2915.10.000000e+001620/1641 (98%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1706 (97%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1706 (97%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1706 (97%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1706 (97%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2913.30.000000e+001655/1694 (97%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2913.30.000000e+001651/1688 (97%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2911.40.000000e+001610/1627 (98%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2911.40.000000e+001661/1704 (97%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001662/1705 (97%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001662/1705 (97%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001662/1705 (97%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001659/1701 (97%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001659/1701 (97%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2907.70.000000e+001658/1699 (97%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2904.10.000000e+001659/1702 (97%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001661/1705 (97%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2904.10.000000e+001660/1704 (97%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2900.40.000000e+001664/1709 (97%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2900.40.000000e+001610/1630 (98%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2900.40.000000e+001656/1699 (97%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2898.50.000000e+001661/1706 (97%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2898.50.000000e+001649/1689 (97%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2898.50.000000e+001631/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2898.50.000000e+001631/1662 (98%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001649/1689 (97%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2898.50.000000e+001657/1701 (97%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2898.50.000000e+001659/1704 (97%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2893.00.000000e+001660/1706 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2893.00.000000e+001656/1701 (97%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2893.00.000000e+001658/1704 (97%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2889.30.000000e+001661/1708 (97%)EPI573334A/chicken/Egypt/141/2014 (A/H5N1) segment 4 (HA)2887.40.000000e+001642/1681 (97%)EPI573324A/duck/Egypt/1560S/2015 (A/H5N1) segment 4 (HA)2887.40.000000e+001598/1615 (98%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2887.40.000000e+001605/1626 (98%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2887.40.000000e+001657/1704 (97%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2887.40.000000e+001658/1705 (97%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2887.40.000000e+001658/1705 (97%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2887.40.000000e+001658/1705 (97%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2887.40.000000e+001658/1705 (97%)EPI398573A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)2887.40.000000e+001658/1705 (97%)

LOCUS KT792910 1750 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/chicken/Gaza/876/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792910 VERSION KT792910.1 GI:938454686 KEYWORDS . SOURCE Influenza A virus (A/chicken/Gaza/876/2015(H5N1)) ORGANISM Influenza A virus (A/chicken/Gaza/876/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1750) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1750) AUTHORS Shkoda,I., Lapin,K., Simanov,L., Alnakhal,R. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1750 /organism="Influenza A virus (A/chicken/Gaza/876/2015(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Gaza/876/2015" /serotype="H5N1" /host="chicken" /db_xref="taxon:1720089" /segment="4" /country="Israel" /collection_date="29-Jun-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33525.1" /db_xref="GI:938454687" /translation="MEKIVLLLAIASIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQHILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYILKKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagccagta ttgtcaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca acacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgagtt cctcaatgtg ccggaatggt cttacatact gaagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca 421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gttttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattca 1201 atcattgaca aaatgaacac ccagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttgaa caagaagatg gaagacggat tcctagatgt ctggacctat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaaaaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggctgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc 1741 ttgtttctac

AlignSegment-IDNameScoreE-ValueIdentityEPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3110.90.000000e+001697/1704 (99%)EPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3099.80.000000e+001692/1699 (99%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3098.00.000000e+001695/1704 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3075.80.000000e+001691/1704 (99%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3064.70.000000e+001689/1704 (99%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3057.30.000000e+001667/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3055.50.000000e+001667/1674 (99%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)3048.10.000000e+001666/1674 (99%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)3044.40.000000e+001658/1663 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)3044.40.000000e+001658/1663 (99%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)3044.40.000000e+001685/1704 (98%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)3042.60.000000e+001684/1702 (98%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3038.90.000000e+001664/1674 (99%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)3037.00.000000e+001684/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)3037.00.000000e+001684/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)3037.00.000000e+001684/1704 (98%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)3031.50.000000e+001661/1671 (99%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)3027.80.000000e+001682/1704 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)3025.90.000000e+001683/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)3020.40.000000e+001682/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)3020.40.000000e+001682/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)3020.40.000000e+001682/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)3020.40.000000e+001682/1705 (98%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)3016.70.000000e+001679/1702 (98%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)3011.20.000000e+001678/1703 (98%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)3009.30.000000e+001637/1641 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)3007.50.000000e+001678/1703 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)3007.50.000000e+001678/1703 (98%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)3005.60.000000e+001678/1704 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)3005.60.000000e+001677/1702 (98%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)3003.80.000000e+001636/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)3003.80.000000e+001636/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)3003.80.000000e+001636/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)3003.80.000000e+001679/1705 (98%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2998.20.000000e+001635/1641 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2994.50.000000e+001633/1639 (99%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)2994.50.000000e+001676/1704 (98%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2994.50.000000e+001672/1698 (98%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2994.50.000000e+001679/1707 (98%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2992.70.000000e+001634/1641 (99%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2992.70.000000e+001634/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2992.70.000000e+001634/1641 (99%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001675/1703 (98%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2990.80.000000e+001669/1694 (98%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2990.80.000000e+001667/1691 (98%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)2989.00.000000e+001675/1704 (98%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)2989.00.000000e+001676/1705 (98%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2987.20.000000e+001633/1641 (99%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2985.30.000000e+001633/1642 (99%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2985.30.000000e+001668/1694 (98%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2985.30.000000e+001668/1694 (98%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2985.30.000000e+001666/1691 (98%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001676/1706 (98%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2979.80.000000e+001673/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2977.90.000000e+001631/1640 (99%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2977.90.000000e+001634/1644 (99%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2977.90.000000e+001673/1704 (98%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001675/1706 (98%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001675/1706 (98%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2974.20.000000e+001666/1694 (98%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2974.20.000000e+001662/1688 (98%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2972.40.000000e+001621/1627 (99%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2972.40.000000e+001672/1704 (98%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2968.70.000000e+001665/1694 (98%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2968.70.000000e+001669/1699 (98%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2966.80.000000e+001671/1704 (98%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1703 (98%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2961.30.000000e+001675/1709 (98%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2961.30.000000e+001621/1630 (99%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2961.30.000000e+001667/1699 (98%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001628/1641 (99%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2959.50.000000e+001642/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2959.50.000000e+001642/1662 (98%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001660/1689 (98%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2950.20.000000e+001672/1708 (97%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001670/1706 (97%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001658/1689 (98%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2948.40.000000e+001616/1626 (99%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI398573A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI340090A/chicken/Egypt/1117AF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001669/1706 (97%)EPI340086A/goose/Egypt/11350S/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001665/1701 (97%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)

LOCUS KT792920 1752 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/chicken/Qatanna/468/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792920 VERSION KT792920.1 GI:938454706 KEYWORDS . SOURCE Influenza A virus (A/chicken/Qatanna/468/2015(H5N1)) ORGANISM Influenza A virus (A/chicken/Qatanna/468/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1752) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1752) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1752 /organism="Influenza A virus (A/chicken/Qatanna/468/2015(H5N1))" /mol_type="viral cRNA" /strain="A/chicken/Qatanna/468/2015" /serotype="H5N1" /host="chicken" /db_xref="taxon:1720090" /segment="4" /country="Israel" /collection_date="22-Mar-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33535.1" /db_xref="GI:938454707" /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRPSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMRSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgttaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca 421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagacc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctaca tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgagaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg 1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacttat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actaccctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc 1741 ttgtttctac ta

AlignSegment-IDNameScoreE-ValueIdentityEPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3122.00.000000e+001699/1704 (99%)EPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3120.10.000000e+001699/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3120.10.000000e+001697/1701 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3120.10.000000e+001697/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3114.60.000000e+001698/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3110.90.000000e+001694/1699 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3075.80.000000e+001691/1704 (99%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3068.40.000000e+001669/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3066.60.000000e+001669/1674 (99%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001668/1674 (99%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)3055.50.000000e+001660/1663 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)3055.50.000000e+001660/1663 (99%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)3053.60.000000e+001686/1702 (99%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3049.90.000000e+001666/1674 (99%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)3048.10.000000e+001686/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)3048.10.000000e+001686/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)3048.10.000000e+001686/1704 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)3044.40.000000e+001685/1704 (98%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001663/1671 (99%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)3038.90.000000e+001684/1704 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)3037.00.000000e+001685/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)3037.00.000000e+001684/1704 (98%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)3031.50.000000e+001684/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)3031.50.000000e+001684/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)3031.50.000000e+001684/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)3031.50.000000e+001684/1705 (98%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)3025.90.000000e+001640/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)3025.90.000000e+001640/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)3025.90.000000e+001640/1641 (99%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001683/1705 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)3020.40.000000e+001639/1641 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001682/1705 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)3020.40.000000e+001682/1705 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)3018.50.000000e+001680/1703 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)3018.50.000000e+001680/1703 (98%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)3016.70.000000e+001637/1639 (99%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)3016.70.000000e+001680/1704 (98%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)3016.70.000000e+001679/1702 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)3016.70.000000e+001679/1702 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)3016.70.000000e+001679/1703 (98%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)3014.90.000000e+001638/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)3009.30.000000e+001637/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)3009.30.000000e+001637/1641 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)3005.60.000000e+001678/1704 (98%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)3005.60.000000e+001674/1698 (98%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)3005.60.000000e+001681/1707 (98%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)3003.80.000000e+001636/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)3003.80.000000e+001636/1641 (99%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001677/1703 (98%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001679/1705 (98%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)3001.90.000000e+001671/1694 (98%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)3001.90.000000e+001669/1691 (98%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)3000.10.000000e+001677/1704 (98%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)3000.10.000000e+001678/1705 (98%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2996.40.000000e+001635/1642 (99%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2996.40.000000e+001670/1694 (98%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2996.40.000000e+001670/1694 (98%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2996.40.000000e+001670/1694 (98%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2996.40.000000e+001668/1691 (98%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2990.80.000000e+001669/1694 (98%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2990.80.000000e+001675/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2989.00.000000e+001633/1640 (99%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2989.00.000000e+001636/1644 (99%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2989.00.000000e+001675/1704 (98%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001677/1706 (98%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001677/1706 (98%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2985.30.000000e+001664/1688 (98%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2983.50.000000e+001623/1627 (99%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1704 (98%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2979.80.000000e+001671/1699 (98%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2977.90.000000e+001673/1704 (98%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001672/1702 (98%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2972.40.000000e+001677/1709 (98%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2972.40.000000e+001623/1630 (99%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2972.40.000000e+001669/1699 (98%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2970.50.000000e+001644/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2970.50.000000e+001644/1662 (98%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001662/1689 (98%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2961.30.000000e+001674/1708 (98%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001672/1706 (98%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001660/1689 (98%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001618/1626 (99%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI398573A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI340090A/chicken/Egypt/1117AF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001671/1706 (97%)EPI340086A/goose/Egypt/11350S/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)

LOCUS KT792922 1728 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/turkey/Israel/14/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792922 VERSION KT792922.1 GI:938454710 KEYWORDS . SOURCE Influenza A virus (A/turkey/Israel/14/2015(H5N1)) ORGANISM Influenza A virus (A/turkey/Israel/14/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1728) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1728) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1728 /organism="Influenza A virus (A/turkey/Israel/14/2015(H5N1))" /mol_type="viral cRNA" /strain="A/turkey/Israel/14/2015" /serotype="H5N1" /host="turkey" /db_xref="taxon:1720094" /segment="4" /country="Israel" /collection_date="16-Jan-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33537.1" /db_xref="GI:938454711" /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKDSWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgttaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga ttcttggtca 421 gatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agttcttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg 1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacttat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actaccctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtgt

AlignSegment-IDNameScoreE-ValueIdentityEPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3131.20.000000e+001701/1704 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3110.90.000000e+001697/1704 (99%)EPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3109.00.000000e+001695/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3103.50.000000e+001696/1704 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3099.80.000000e+001692/1699 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001694/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3075.80.000000e+001691/1704 (99%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001689/1704 (99%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3057.30.000000e+001667/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3055.50.000000e+001667/1674 (99%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3053.60.000000e+001687/1704 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)3044.40.000000e+001658/1663 (99%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3038.90.000000e+001664/1674 (99%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)3037.00.000000e+001664/1674 (99%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)3037.00.000000e+001683/1702 (98%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)3033.30.000000e+001656/1663 (99%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)3031.50.000000e+001661/1671 (99%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001682/1704 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)3022.20.000000e+001681/1704 (98%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)3020.40.000000e+001681/1704 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)3016.70.000000e+001680/1704 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)3014.90.000000e+001680/1704 (98%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)3009.30.000000e+001680/1705 (98%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001679/1705 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)3000.10.000000e+001635/1640 (99%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2998.20.000000e+001635/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2998.20.000000e+001635/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2998.20.000000e+001635/1641 (99%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001678/1705 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2996.40.000000e+001676/1703 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2996.40.000000e+001676/1703 (98%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2994.50.000000e+001676/1704 (98%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2994.50.000000e+001675/1702 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2994.50.000000e+001675/1702 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2994.50.000000e+001675/1703 (98%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2992.70.000000e+001634/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2992.70.000000e+001634/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2989.00.000000e+001632/1639 (99%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2989.00.000000e+001678/1707 (98%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2987.20.000000e+001633/1641 (99%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2987.20.000000e+001633/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2987.20.000000e+001633/1641 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)2983.50.000000e+001674/1704 (98%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2983.50.000000e+001670/1698 (98%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2981.60.000000e+001632/1641 (99%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001673/1703 (98%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2979.80.000000e+001667/1694 (98%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2979.80.000000e+001665/1691 (98%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2977.90.000000e+001634/1644 (99%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)2977.90.000000e+001673/1704 (98%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)2977.90.000000e+001674/1705 (98%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2974.20.000000e+001631/1642 (99%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2974.20.000000e+001666/1694 (98%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2974.20.000000e+001666/1694 (98%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2974.20.000000e+001664/1691 (98%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2972.40.000000e+001621/1627 (99%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2968.70.000000e+001665/1694 (98%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2968.70.000000e+001671/1704 (98%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2966.80.000000e+001671/1704 (98%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001673/1706 (98%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001673/1706 (98%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2963.10.000000e+001664/1694 (98%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2963.10.000000e+001660/1688 (98%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2961.30.000000e+001621/1630 (99%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2961.30.000000e+001670/1704 (98%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2957.60.000000e+001667/1699 (98%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2955.80.000000e+001669/1704 (97%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2953.90.000000e+001627/1641 (99%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2953.90.000000e+001668/1702 (98%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2950.20.000000e+001673/1709 (97%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2950.20.000000e+001665/1699 (97%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2948.40.000000e+001616/1626 (99%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2948.40.000000e+001640/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2948.40.000000e+001640/1662 (98%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001658/1689 (98%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001669/1706 (97%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2939.10.000000e+001671/1709 (97%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2937.30.000000e+001656/1689 (98%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI398573A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI340090A/chicken/Egypt/1117AF/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001664/1701 (97%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001667/1706 (97%)EPI340086A/goose/Egypt/11350S/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001663/1701 (97%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)

LOCUS KT792921 1751 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/turkey/Israel/633/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792921 VERSION KT792921.1 GI:938454708 KEYWORDS . SOURCE Influenza A virus (A/turkey/Israel/633/2015(H5N1)) ORGANISM Influenza A virus (A/turkey/Israel/633/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1751) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1751) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1751 /organism="Influenza A virus (A/turkey/Israel/633/2015(H5N1))" /mol_type="viral cRNA" /strain="A/turkey/Israel/633/2015" /serotype="H5N1" /host="turkey" /db_xref="taxon:1720095" /segment="4" /country="Israel" /collection_date="11-May-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33536.1" /db_xref="GI:938454709" /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIVEKINPA NDLCYPGNFNDYEELKHLLSRINHFEKIQIIPKESWSDHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgtcaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagt ggagaaaatc 301 aatccagcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcagatca ttcccaaaga gtcttggtca 421 gatcatgaag cctcgggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg 1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacctat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc 1741 ttgtttctac t

AlignSegment-IDNameScoreE-ValueIdentityEPI579781A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI579780A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)3109.00.000000e+001697/1704 (99%)EPI584778A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)3086.90.000000e+001693/1704 (99%)EPI579006A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)3077.60.000000e+001691/1704 (99%)EPI573252A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI573244A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI579784A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI579783A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI579782A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI579520A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI579325A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI579324A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI574132A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)3070.30.000000e+001690/1704 (99%)EPI573268A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI557138A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI573248A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)3066.60.000000e+001686/1699 (99%)EPI573250A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI642537A/Egypt/682/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001688/1704 (99%)EPI573260A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573246A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI584783A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI574125A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI550493A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)3031.50.000000e+001683/1704 (98%)EPI573315A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)3024.10.000000e+001661/1673 (99%)EPI573321A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)3022.20.000000e+001661/1674 (99%)EPI573322A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)3016.70.000000e+001660/1674 (99%)EPI573330A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)3014.90.000000e+001660/1674 (99%)EPI557194A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI557178A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)3014.90.000000e+001679/1702 (98%)EPI573328A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)3011.20.000000e+001652/1663 (99%)EPI573318A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)3011.20.000000e+001652/1663 (99%)EPI500079A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI500078A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI487342A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI500109A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)3000.10.000000e+001677/1704 (98%)EPI573319A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)2998.20.000000e+001655/1671 (99%)EPI504991A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI504990A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI348153A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)2994.50.000000e+001676/1704 (98%)EPI597822A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI557218A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI340133A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI597815A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI500082A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI340135A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI338733A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI338732A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI338616A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)2987.20.000000e+001676/1705 (98%)EPI600754A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI597825A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI597812A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI372907A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI348152A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340138A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340101A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340087A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI340085A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI338615A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI603916A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)2977.90.000000e+001631/1640 (99%)EPI608783A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI608778A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI608777A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)2976.10.000000e+001631/1641 (99%)EPI597823A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI597818A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI597816A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI557136A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI550500A/duck/Egypt/14VIR784-6-1328S/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI373013A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001674/1705 (98%)EPI340151A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI340104A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI550507A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)2974.20.000000e+001672/1703 (98%)EPI348158A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)2974.20.000000e+001672/1703 (98%)EPI373020A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)2972.40.000000e+001672/1704 (98%)EPI348160A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI348157A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI348156A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)2972.40.000000e+001671/1703 (98%)EPI608786A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI608780A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)2970.50.000000e+001630/1641 (99%)EPI597817A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI597814A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI373016A/Egypt/N10954/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340106A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340103A/chicken/Egypt/111766V/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI340092A/chicken/Egypt/1155/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001672/1704 (98%)EPI338618A/duck/Egypt/M2583A/2010 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI338610A/duck/Egypt/M3075B/2011 (A/H5N1) segment 4 (HA)2970.50.000000e+001673/1705 (98%)EPI608781A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)2966.80.000000e+001628/1639 (99%)EPI608784A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI608782A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI608779A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)2965.00.000000e+001629/1641 (99%)EPI597813A/chicken/Egypt/1412SD/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI537618A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI537617A/Egypt/N01753/2014 (A/H5N1) segment 4 (HA)2965.00.000000e+001670/1703 (98%)EPI373012A/Egypt/N04286/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI373011A/Egypt/N04288/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI372963A/Egypt/N10621/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI372875A/Egypt/N0677/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI340165A/duck/Egypt/10228SF/2010 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340154A/duck/Egypt/10118/2010 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI340141A/chicken/Egypt/112SG/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340136A/chicken/Egypt/1112/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340131A/chicken/Egypt/1117/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340122A/chicken/Egypt/1128/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340107A/chicken/Egypt/11184S/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001672/1705 (98%)EPI340102A/chicken/Egypt/1134SD/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI340091A/duck/Egypt/11117SS/2011 (A/H5N1) segment 4 (HA)2965.00.000000e+001671/1704 (98%)EPI373017A/Egypt/N05860/2011 (A/H5N1) segment 4 (HA)2961.30.000000e+001670/1704 (98%)EPI348151A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)2961.30.000000e+001666/1698 (98%)EPI340118A/chicken/Egypt/1158SF/2011 (A/H5N1) segment 4 (HA)2961.30.000000e+001673/1707 (98%)EPI608787A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)2959.50.000000e+001628/1641 (99%)EPI597828A/goose/Egypt/1439FAOS/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI597819A/duck/Egypt/1468S/2014 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI397334A/duck/Egypt/1111sg/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI393783A/Egypt/N00951/2012 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI373015A/Egypt/N04284/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI372851A/Egypt/N0544/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340126A/chicken/Egypt/112AF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340124A/chicken/Egypt/114AF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340123A/chicken/Egypt/115AF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340121A/chicken/Egypt/1146SF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340119A/duck/Egypt/1148SF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340100A/duck/Egypt/11211S/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI340094A/duck/Egypt/1116AF/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI338614A/chicken/Egypt/M2773A/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI338609A/chicken/Egypt/S3280B/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001671/1705 (98%)EPI336862A/turkey/Jenin/341/2011 (A/H5N1) segment 4 (HA)2959.50.000000e+001670/1704 (98%)EPI603902A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)2957.60.000000e+001663/1694 (98%)EPI538767A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)2957.60.000000e+001661/1691 (98%)EPI372923A/Egypt/N7724/2011 (A/H5N1) segment 4 (HA)2955.80.000000e+001669/1704 (97%)EPI369189A/chicken/Egypt/1188/2011 (A/H5N1) segment 4 (HA)2955.80.000000e+001670/1705 (97%)EPI557202A/chicken/Egypt/NLQP20SL-AR751/2013 (A/H5N1) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI493430A/chicken/Egypt/S3280E/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001670/1705 (97%)EPI393786A/Egypt/N02137/2012 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI373019A/Egypt/N04285/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI373018A/Egypt/N00002/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI372859A/Egypt/N6322/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI369181A/chicken/Egypt/1176/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI369180A/duck/Egypt/1120SMF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340173A/chicken/Egypt/1021AD/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340160A/chicken/Egypt/10250SF/2010 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340127A/chicken/Egypt/111AF/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340109A/chicken/Egypt/111640V/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI340082A/quail/Egypt/1171SG/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI338731A/goose/Egypt/M2794E/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI338613A/goose/Egypt/M2788A/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI338612A/goose/Egypt/M2788E/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI338611A/goose/Egypt/M2794A/2011 (A/H5N1) segment 4 (HA)2953.90.000000e+001669/1704 (97%)EPI628911A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)2952.10.000000e+001627/1642 (99%)EPI603901A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)2952.10.000000e+001662/1694 (98%)EPI460395A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)2952.10.000000e+001662/1694 (98%)EPI348155A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)2952.10.000000e+001660/1691 (98%)EPI608785A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)2948.40.000000e+001626/1641 (99%)EPI597811A/duck/Egypt/141AI/2014 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI373022A/Egypt/N09407/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI372867A/Egypt/N6658/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340152A/duck/Egypt/10290SF/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340149A/duck/Egypt/10336SF/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340147A/chicken/Egypt/10132/2010 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340134A/duck/Egypt/1113SD/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI340129A/chicken/Egypt/1174S/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340116A/chicken/Egypt/116AF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI340115A/duck/Egypt/1174SF/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340099A/duck/Egypt/1153/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI340096A/chicken/Egypt/111945V/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001668/1704 (97%)EPI338608A/chicken/Egypt/S3280D/2011 (A/H5N1) segment 4 (HA)2948.40.000000e+001669/1705 (97%)EPI603908A/chicken/Egypt/1456CAL/2014 (A/H5N1) segment 4 (HA)2946.50.000000e+001661/1694 (98%)EPI348154A/chicken/Egypt/11VIR4453-264/2010 (A/H5N1) segment 4 (HA)2946.50.000000e+001667/1704 (97%)EPI574389A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)2944.70.000000e+001628/1644 (99%)EPI372915A/Egypt/N7592/2011 (A/H5N1) segment 4 (HA)2944.70.000000e+001667/1704 (97%)EPI597827A/chicken/Egypt/147CA/2014 (A/H5N1) segment 4 (HA)2942.80.000000e+001669/1706 (97%)EPI373014A/Egypt/N04287/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001669/1706 (97%)EPI372883A/Egypt/N6774/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI372715A/Egypt/9538-NAMRU3/2009 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI369193A/chicken/Egypt/121/2012 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI369190A/duck/Egypt/11762s/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI340097A/duck/Egypt/11221S/2011 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI255398A/Egypt/N09174/2009 (A/H5N1) segment 4 (HA)2942.80.000000e+001667/1704 (97%)EPI603900A/turkey/Egypt/1419FAOS/2014 (A/H5N1) segment 4 (HA)2941.00.000000e+001660/1694 (97%)EPI348148A/chicken/Egypt/11VIR4453-59/VRLCU/2011 (A/H5N1) segment 4 (HA)2941.00.000000e+001656/1688 (98%)EPI603915A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)2939.10.000000e+001615/1627 (99%)EPI369179A/chicken/Egypt/11506SF/2011 (A/H5N1) segment 4 (HA)2939.10.000000e+001666/1704 (97%)EPI597821A/chicken/Egypt/1411CAL/2014 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI493497A/chicken/Egypt/S2938D/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI372931A/Egypt/N09966/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI372891A/Egypt/N6828/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI338730A/chicken/Egypt/S2938A/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI338729A/chicken/Egypt/S3093A/2011 (A/H5N1) segment 4 (HA)2937.30.000000e+001666/1704 (97%)EPI255371A/Egypt/N02127/2010 (A/H5N1) segment 4 (HA)2937.30.000000e+001667/1705 (97%)EPI348150A/chicken/Egypt/11VIR4453-138/VRLCU/2011 (A/H5N1) segment 4 (HA)2935.40.000000e+001663/1699 (97%)EPI255367A/Egypt/N01982/2010 (A/H5N1) segment 4 (HA)2933.60.000000e+001665/1704 (97%)EPI557210A/chicken/Egypt/NLQP639V-AR752/2013 (A/H5N1) segment 4 (HA)2931.80.000000e+001664/1702 (97%)EPI500117A/duck/Egypt/S6419C/2012 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI500080A/turkey/Egypt/S6405E/2012 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI493152A/duck/Egypt/Q4596B/2012 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI398575A/duck/Egypt/Q4596C/2012 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI373021A/Egypt/N16789/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI372955A/Egypt/N14976/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI372947A/Egypt/N11470/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI340144A/chicken/Egypt/10413SF/2010 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI340098A/duck/Egypt/11106SF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI340093A/chicken/Egypt/11124SF/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001667/1706 (97%)EPI340089A/duck/Egypt/11312S/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001666/1705 (97%)EPI338187A/harrier/Israel/531/2011 (A/H5N1) segment 4 (HA)2931.80.000000e+001665/1704 (97%)EPI597824A/chicken/Egypt/14126S/2014 (A/H5N1) segment 4 (HA)2928.10.000000e+001669/1709 (97%)EPI573314A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)2928.10.000000e+001615/1630 (99%)EPI348162A/chicken/Egypt/11VIR4453-7/VRLCU/2010 (A/H5N1) segment 4 (HA)2928.10.000000e+001661/1699 (97%)EPI538807A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)2926.20.000000e+001636/1662 (98%)EPI538791A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)2926.20.000000e+001636/1662 (98%)EPI500085A/duck/Egypt/S6419E/2012 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI372939A/Egypt/N11126/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369198A/chicken/Egypt/12186F-12/2012 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369186A/duck/Egypt/11685s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI369185A/chicken/Egypt/11667s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI369183A/chicken/Egypt/11672s/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI348159A/chicken/Egypt/11VIR4453-137/VRLCU/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001654/1689 (97%)EPI340150A/duck/Egypt/10331SF/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340146A/chicken/Egypt/10347SF/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340110A/goose/Egypt/11162S/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI340081A/chicken/Egypt/11529S/2011 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI287352A/chicken/Egypt/1553-15/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001665/1705 (97%)EPI283813A/duck/Egypt/1068s/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI283811A/goose/Egypt/1057/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001662/1701 (97%)EPI283791A/chicken/Egypt/1034/2010 (A/H5N1) segment 4 (HA)2926.20.000000e+001662/1701 (97%)EPI255400A/Egypt/N09539/2009 (A/H5N1) segment 4 (HA)2926.20.000000e+001664/1704 (97%)EPI597826A/chicken/Egypt/141VI/2014 (A/H5N1) segment 4 (HA)2920.70.000000e+001665/1706 (97%)EPI500113A/duck/Egypt/Q4596A/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI369197A/chicken/Egypt/12186F-9/2012 (A/H5N1) segment 4 (HA)2920.70.000000e+001663/1704 (97%)EPI597820A/chicken/Egypt/1429AD/2014 (A/H5N1) segment 4 (HA)2917.00.000000e+001666/1708 (97%)EPI573333A/chicken/Egypt/1427AF/2014 (A/H5N1) segment 4 (HA)2915.10.000000e+001652/1689 (97%)EPI573317A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)2915.10.000000e+001610/1626 (99%)EPI550486A/chicken/Egypt/14VIR784-5-1318S/2013 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI504989A/duck/Egypt/BSU-FA-1D/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI398585A/chicken/Egypt/S3802D/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI398582A/chicken/Egypt/S3806B/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI398579A/chicken/Egypt/S3802B/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI398578A/chicken/Egypt/S3806D/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI398573A/chicken/Egypt/S3806A/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001663/1705 (97%)EPI340090A/chicken/Egypt/1117AF/2011 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI283815A/duck/Egypt/106d/2010 (A/H5N1) segment 4 (HA)2915.10.000000e+001660/1701 (97%)EPI283782A/chicken/Egypt/091317s/2009 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI214881A/chicken/Egypt/0920-NLQP/2009 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI184804A/Egypt/N00585/2009 (A/H5N1) segment 4 (HA)2915.10.000000e+001662/1704 (97%)EPI340114A/chicken/Egypt/117AF/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340111A/chicken/Egypt/119AF/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI340088A/duck/Egypt/11175SF/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001663/1706 (97%)EPI340086A/goose/Egypt/11350S/2011 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI283821A/duck/Egypt/1063s/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001659/1701 (97%)EPI283789A/chicken/Egypt/1029/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI255394A/Egypt/N08835/2009 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)EPI255375A/Egypt/N02770/2010 (A/H5N1) segment 4 (HA)2909.60.000000e+001661/1704 (97%)

LOCUS KT792919 1751 bp cRNA linear VRL 20-OCT-2015 DEFINITION Influenza A virus (A/turkey/Israel/658/2015(H5N1)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT792919 VERSION KT792919.1 GI:938454704 KEYWORDS . SOURCE Influenza A virus (A/turkey/Israel/658/2015(H5N1)) ORGANISM Influenza A virus (A/turkey/Israel/658/2015(H5N1)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1751) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Highly pathogenic avian influenza A virus H5N1 isolated in Israel 2015 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1751) AUTHORS Shkoda,I., Lapin,K., Simanov,L. and Lublin,A. TITLE Direct Submission JOURNAL Submitted (21-SEP-2015) Division of Avian Diseases, Kimron Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan DNAStar v. DNASTAR Lasergene 8 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1751 /organism="Influenza A virus (A/turkey/Israel/658/2015(H5N1))" /mol_type="viral cRNA" /strain="A/turkey/Israel/658/2015" /serotype="H5N1" /host="turkey" /db_xref="taxon:1720096" /segment="4" /country="Israel" /collection_date="18-May-2015" /note="passage details: E1" gene 4..1707 /gene="HA" CDS 4..1707 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ33534.1" /db_xref="GI:938454705" /translation="MEKIVLLLAIVSIVKSDQICIGYHANNSTEQVDTIMEKNVTVTH AQDILEKTHNGKLCNLDGVKPLILRDCSVAGWLLGNPMCDEFLNVPEWSYIGEKISPA NDLCYPGNFNDYEELKHLLSRINHFEKIHIIPKESWSYHEASGVSSACPYQGRSSFFR NVVWLTKKNDAYPTIKKSYNNTNQEDLLVLWGIHHPNDAAEQTRLYQNPTTYISVGTS TLNQRLVPKIATRSKVNGQSGRMEFFWTILKSNDAINFESNGNFIAPENAYKIVKKGD STIMKSELEYSNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRN SPQGEKRRKKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQRAIDG VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHRCDNECMESVRNGTYDYPQYS EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC I" sig_peptide 4..51 /gene="HA" mat_peptide 52..1038 /gene="HA" /product="HA1" mat_peptide 1039..1704 /gene="HA" /product="HA2" ORIGIN 1 aaaatggaga aaatagtgct tcttcttgca atagtcagta ttgtcaaaag tgatcagatt 61 tgcattggtt accatgcaaa caactcgaca gagcaggttg acacaataat ggaaaagaac 121 gtcactgtta cacacgccca agacatactg gaaaagacac acaacgggaa actctgcaat 181 ctagatggag tgaagcctct cattttaaga gattgtagtg tagctggatg gctcctcggg 241 aacccaatgt gcgatgaatt cctcaatgtg ccggaatggt cttacatagg ggagaaaatc 301 agtccggcca atgacctctg ttatccaggg aatttcaacg actatgaaga actgaaacac 361 ctattgagca gaataaacca ttttgagaaa attcatatca ttcccaaaga gtcttggtca 421 tatcatgaag cctcaggagt gagctcagca tgcccatacc aaggaagatc ctcctttttt 481 agaaatgttg tatggcttac caaaaagaac gatgcatacc caacaataaa gaaaagttac 541 aataatacta accaagaaga tcttttggta ctatggggga ttcaccatcc aaatgatgct 601 gcagagcaga caaggcttta tcaaaaccca actacctata tctccgttgg gacatcaaca 661 ctaaaccaga gattggtacc caaaatagct actagatcta aggtaaacgg gcaaagtgga 721 aggatggagt tcttttggac aattttaaaa tcgaatgatg caataaactt tgagagcaat 781 ggaaacttca ttgctccaga aaatgcatac aaaattgtca agaaaggaga ttcaacaatt 841 atgaaaagtg agttggaata tagtaactgc aacaccaagt gtcagactcc aataggggcg 901 ataaactcca gtatgccatt ccacaacatc caccctctca ccatcgggga atgccccaaa 961 tatgtgaaat caaacagatt agtccttgct actgggctca ggaatagccc tcaaggagag 1021 aaaagaagaa aaaagagagg actattcgga gccatagcag gctttataga gggaggatgg 1081 cagggaatgg tagatggttg gtatgggtac caccatagca acgagcaggg gagtgggtac 1141 gctgcagaca aagaatccac tcaaagggct atagatggag tcaccaataa ggtcaattcg 1201 atcattgaca aaatgaacac tcagtttgag gctgttggaa gggaatttaa taacttagaa 1261 aggagaatag aaaatttaaa caagaagatg gaagacggat tcctagatgt ctggacctat 1321 aatgctgaac ttctggttct catggaaaat gagagaactc tagactttca tgactcaaat 1381 gtcaagaatc tttatgacaa ggtccgacta cagcttaggg ataatgcaaa ggagcttggt 1441 aacggttgtt tcgagttcta tcacagatgt gataatgaat gtatggaaag tgtaagaaac 1501 ggaacgtatg actatcctca atattcagaa gaagcaagat taaaaagaga ggaaataagt 1561 ggagtaaaat tggagtcaat aggaacttac caaatactgt caatttattc aacagtggcg 1621 agctccctag cactggcaat catggtggct ggtctatctt tatggatgtg ctccaatgga 1681 tcgctacaat gcagaatttg catttaaatt tgtgagttca aattgtagtt aaaaacaccc 1741 ttgtttctac t

Kimron Veterinari Institute in Israel releases 2015 H5N1 poultry sequences which match Egypt.

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REFERENCES 1 World Health Organization. Ebola situation report — 7 October 2015 (http://apps.who.int/ebola/current-situation/ebola-situation-report-7-october-2015). 2 Dowell SF, Mukunu R, Ksiazek TG, Khan AS, Rollin PE, Peters CJ. Transmission of Ebola hemorrhagic fever: a study of risk factors in family members, Kikwit, Democratic Republic of the Congo, 1995. J Infect Dis 1999;179:Suppl 1:S87-S91 CrossRef | Web of Science | Medline 3 Dietz P, Jambai A, Paweska JT, Yoti Z, Ksaizek TG. Epidemiology and risk factors for Ebola virus infection in Sierra Leone — May 23, 2014–January 31, 2015. Clin Infect Dis2015July15 (Epub ahead of print). Medline 4 Kreuels B, Addo MM, Schmiedel S. Severe Ebola virus infection complicated by gram-negative septicemia. N Engl J Med 2015;372:1377-1377 Free Full Text | Web of Science | Medline 5 Rodriguez LL, De Roo A, Guimard Y, et al. Persistence and genetic stability of Ebola virus during the outbreak in Kikwit, Democratic Republic of the Congo, 1995. J Infect Dis1999;179:Suppl 1:S170-S176 CrossRef | Web of Science | Medline 6 Rogstad KE, Tunbridge A. Ebola virus as a sexually transmitted infection. Curr Opin Infect Dis 2015;28:83-85 CrossRef | Web of Science | Medline 7 Rowe AK, Bertolli J, Khan AS, et al. Clinical, virologic, and immunologic follow-up of convalescent Ebola hemorrhagic fever patients and their household contacts, Kikwit, Democratic Republic of the Congo. J Infect Dis 1999;179:Suppl 1:S28-S35 CrossRef | Web of Science | Medline 8 Bausch DG, Towner JS, Dowell SF, et al. Assessment of the risk of Ebola virus transmission from bodily fluids and fomites. J Infect Dis 2007;196:Suppl 2:S142-S147 CrossRef | Web of Science | Medline 9 Emond RT, Evans B, Bowen ET, Lloyd G. A case of Ebola virus infection. Br Med J1977;2:541-544 CrossRef | Web of Science | Medline 10 Martini GA, Schmidt HA. Spermatogenic transmission of the “Marburg virus”: causes of “Marburg simian disease.” Klin Wochenschr 1968;46:398-400. (In German.) CrossRef | Medline 11 Possible sexual transmission of Ebola virus — Liberia, 2015. MMWR Morb Mortal Wkly Rep 2015;64:479-481 Web of Science | Medline 12 World Health Organization. Interim advice on the sexual transmission of the Ebola virus disease. 2015 (http://www.who.int/reproductivehealth/topics/rtis/ebola-virus-semen/en/). 13 Centers for Disease Control and Prevention. Ebola virus disease — transmission. 2015 (http://www.cdc.gov/vhf/ebola/transmission/index.html). 14 Centers for Disease Control and Prevention. Ebola virus NP real-time RT-PCR assay. 2014 (http://www.fda.gov/downloads/MedicalDevices/Safety/EmergencySituations/UCM418810.pdf). 15 Centers for Disease Control and Prevention. Ebola virus VP40 real-time RT-PCR assay, 2014 (http://www.fda.gov/downloads/MedicalDevices/Safety/EmergencySituations/UCM418815.pdf). 16 Towner JS, Rollin PE, Bausch DG, et al. Rapid diagnosis of Ebola hemorrhagic fever by reverse transcription-PCR in an outbreak setting and assessment of patient viral load as a predictor of outcome. J Virol 2004;78:4330-4341 CrossRef | Web of Science | Medline 17 Spengler JR, McElroy AK, Harmon JR, Ströher U, Nichol ST, Spiropoulou CF. Relationship between Ebola virus real-time quantitative polymerase chain reaction-based threshold cycle value and virus isolation from human plasma. J Infect Dis 2015;212:Suppl 2:S346-S349 CrossRef | Medline

DISCUSSIONWe gathered evidence showing that an Ebola virus RNA signal on quantitative RT-PCR was found in the semen of male survivors of EVD at least 9 months after the onset of symptoms. Because the data in this report are cross sectional, we are limited to reporting only the point prevalence among participants rather than describing individual-level persistence and clearance of the RT-PCR signal over time. Among this cross-sectional group of participants, all 9 male survivors who provided a sample during the first 3 months after the onset of illness had positive results on quantitative RT-PCR. During months 4 to 6, more than half the enrolled survivors had positive results on quantitative RT-PCR. The percentage of male survivors with positive results continued to decline over time, with approximately one quarter of the participants having positive findings on quantitative RT-PCR at 7 to 9 months after onset. We observed that the median cycle-threshold values for the NP and VP40 gene targets increased over time, which indicated that the median quantity of viral RNA in the semen decreased over time. Our study cohort included only survivors whose onset of illness was 10 months or less before enrollment, so we do not yet know how long survivors of EVD may have Ebola RNA detectable on quantitative RT-PCR in semen. Follow-up of this cohort is ongoing, and this report will be finalized when additional data to address the issues of infectivity are available. The detection of Ebola virus RNA by quantitative RT-PCR does not necessarily indicate that infectious virus is present. The quantitative RT-PCR assay used in this study is highly sensitive, with a detection limit per reaction of 30 median tissue-culture–infective doses (TCID50) for the NP and VP40 gene targets in blood and urine samples to which a known quantity of live virus was added.14,15 However, the targeted RNA sequences detected by quantitative RT-PCR could be detecting the presence of the full genome from an intact replicating virus or from smaller fragments that are unable to replicate and infect a host cell. Virus-isolation assays are under way, in which the specimens will be inoculated onto mammalian cells and the cell cultures will be observed for cytopathic effect as the virus replicates, which is the best available standard to approximate infectivity. The cycle-threshold value for Ebola RNA has been shown to be a good approximation of the viral load in blood,16 with an increasing cycle-threshold value indicating a decrease in the viral load. A limited study that examined the relationship between cycle-threshold values and virus isolation did not detect infectious virus in blood specimens from patients with EVD when cycle-threshold values were greater than 35.5 with the NP gene target.17 However, experiments have not yet been performed to predict the cycle-threshold value at which viable virus can no longer be cultured in semen. It is possible that even if men provide samples that are positive on quantitative RT-PCR several months after the onset of illness, the higher cycle-threshold values (such as the median values of 37.0 value with the NP gene target and 35.6 with the VP40 gene target at 7 to 9 months observed in the current study) may indicate that their semen is no longer infectious. Ongoing serial testing until the men in this study cohort have two consecutive negative results on quantitative RT-PCR, as defined above, and performing viral culture of the RT-PCR–positive specimens will enable us to address the question of the duration of persistence of potentially infectious virus in semen. Our cross-sectional analysis of baseline data describes the preliminary results in this cohort. Follow-up of this preliminary report continues so that we may investigate the presence and persistence of virus in the semen of survivors of EVD, including studying the relationship among cycle-threshold values, viral isolation, and genome sequencing; assessing how long semen from a survivor of EVD will remain positive; and exploring risk factors for the persistence of Ebola virus in semen. Although our findings are based on a cohort of 100 male survivors of EVD, the public health implications are still uncertain. The ongoing study of quantitative RT-PCR positivity and virus isolation in semen will provide better estimates of the duration of viral persistence and related probabilities of persistence at various points in time. We do not yet have sufficient information to assess the risk of transmission through sexual intercourse, oral sex, or other sex acts from men with viable virus in their semen. Before the Ebola epidemic in western Africa, a single case of Marburg virus disease and one case of EVD had been linked to sexual contact with survivors of Marburg virus disease and EVD, respectively.7,10 In western Africa, cases that have been linked to sexual contact with survivors of EVD have not been systematically documented, and fewer than 20 in total have been suspected (Knust B, CDC; Formenty P, WHO: personal communication). Although the potential contribution of sexual transmission to the scale of the epidemic is largely unknown, the unprecedented number of more than 16,000 survivors of EVD across Sierra Leone, Guinea, and Liberia, roughly half of whom are male, creates the potential for transmission and initiation of new chains of transmission, even months after the outbreak has ended. Even though there have been only rare cases of EVD linked to sexual transmission, research is needed to investigate whether infectious virus may be present in vaginal fluid or other body fluids after recovery, and the testing of additional body fluids in both male and female survivors is planned. Programs such as semen testing and preventive behavioral counseling are needed in order to help survivors of EVD appreciate and mitigate the possible risk of sexual transmission. Such programs would help men and women understand their individual risk and take appropriate measures to protect their sexual partners, specifically in regard to condom use and disposal, and could provide links to care and counseling programs for survivors. Because semen-testing programs are not yet universally available, outreach activities are needed to provide education regarding recommendations and risks to survivor communities and sexual partners of survivors in a way that does not further stigmatize the community of survivors of EVD. Persons who survive EVD face myriad challenges. Many survivors have family members and friends who died from EVD. Many are unemployed, face stigma from their communities, and have lingering sequelae in addition to the risk of persisting virus in semen. Due respect and continuing efforts that have strong sustainable support from within the local communities are crucial in mitigating negative effects in terms of further stigma attached to survivors. Supported by the WHO, the CDC, the Sierra Leone Ministry of Health and Sanitation, and the Joint United Nations Program on HIV/AIDS (UNAIDS). Disclosure forms provided by the authors are available with the full text of this article at NEJM.org. The views expressed in this article are those of the authors and do not necessarily represent the official positions of the World Health Organization (WHO) or the Centers for Disease Control and Prevention (CDC). This article was published on October 14, 2015, at NEJM.org. We thank all the study participants, without whom this study would not have been possible, and the membership of the Sierra Leone Association of Ebola Survivors. SOURCE INFORMATIONFrom the Sierra Leone Ministry of Health and Sanitation (G.F.D., A.J., A.H.W., S.S.), Sierra Leone Armed Forces (F.R.S., T.A.M., M.S.D., B.I., F.S.), and Sierra Leone Ministry of Social Welfare, Gender, and Children’s Affairs (T.D.) — all in Freetown, Sierra Leone; Centers for Disease Control and Prevention, Atlanta (B.K., C.R., E.E., K.B., N.A., S.D.B., E.M., B.R.E., A. Brault, J.W., T.S., S.T.N., U.S., O.M.); World Health Organization, Geneva (N.B., P.F., A.E.T., J.E.M., S.L.R.M., M.S.D., T.W., F.K.E., D.N., A. Banerjee, K.N.D., M.L.); and Karolinska Institutet, Stockholm (A.E.T.). Address reprint requests to Dr. Deen at Connaught Hospital, Freetown, Sierra Leone, or [email protected].

RESULTSStudy ParticipantsRT-PCR results were available for 93 of the 100 participants enrolled. Three participants were withdrawn from the study in accordance with the protocol after they were unable to provide a specimen at two consecutive visits. Four participants did not have diagnostic RT-PCR results from semen testing at baseline (i.e., the cycle-threshold value for B2M was above the cutoff value) and were excluded from this analysis. The mean age of the 93 participants was 30 years (range, 18 to 58). A total of 15% of the participants had no formal education, 22% had less than 6 years of education, and 63% had 6 or more years. When the participants were asked about income, 43% reported not knowing their monthly income, 24% reported earning less than $100 (U.S.) per month, 13% reported earning in the range of $100 to $1,000 per month, 10% reported earning more than $1,000 per month, and 10% did not answer. No participant reported having received a diagnosis of HIV infection, tuberculosis, or diabetes. Among the 93 participants, the time from illness onset to study enrollment was 2 to 3 months (64 to 120 days) for 9 men (10%), 4 to 6 months (121 to 210 days) for 40 men (43%), 7 to 9 months (211 to 300 days) for 43 men (46%), and 10 months (306 days) for 1 man (1%). Detection of Ebola RNA in SemenA total of 46 of the 93 men (49%) had a specimen that was positive on quantitative RT-PCR. Ebola virus RNA was detected in the semen of all 9 men from whom a specimen was obtained during the first 3 months after the onset of illness, in the semen of 26 of 40 men (65%) from whom a specimen was obtained at 4 to 6 months, and in the semen of 11 of 43 men (26%) from whom a specimen was obtained at 7 to 9 months (Figure 1FIGURE 1Results on Quantitative RT-PCR in Initial Semen Specimens Obtained from Survivors of Ebola Virus Disease, According to Time after Symptom Onset.). The results for 1 participant who had a specimen obtained at 10 months were indeterminate. The proportions of men with semen samples that were negative or indeterminate on quantitative RT-PCR were higher with increasing months after the onset of EVD. The median cycle-threshold values increased as the months after the onset of EVD increased. For specimens obtained at 2 to 3 months, the values were 32.0 with the NP gene target and 31.1 with the VP40 gene target; for those obtained at 4 to 6 months, the values were 34.5 and 32.3, respectively; and for those obtained at 7 to 9 months, the values were 37.0 and 35.6, respectively (Table 1TABLE 1Proportion of Positive Findings on Quantitative RT-PCR and Cycle-Threshold Values in the Semen of Survivors of Ebola Virus Disease, According to Time after Symptom Onset.). The longest time after the onset of a participant’s EVD symptoms that a semen specimen obtained at baseline remained positive on quantitative RT-PCR was 284 days (9 months). Conversely, the shortest time after symptom onset in a participant that an initial semen specimen was negative on quantitative RT-PCR was 128 days (4 months). Indeterminate results were encountered in 10 initial specimens in the range of 152 to 273 days after the onset of symptoms. When we considered the number of days after a participant’s discharge from the Ebola treatment center, the longest time that an initial semen specimen remained positive on quantitative RT-PCR was 272 days (9 months). The shortest time after a participant’s discharge that an initial semen specimen was negative on quantitative RT-PCR was 100 days (3 months).

METHODSStudy Design and OversightThe Sierra Leone Ministry of Health and Sanitation, the Sierra Leone Ministry of Social Welfare, Gender, and Children’s Affairs, the WHO, and the CDC designed the study, and the Sierra Leone Ministry of Defense, the WHO, and the CDC gathered the data. The data analysis was performed and supervised by the CDC and the WHO. Manuscript planning and drafting were also overseen and performed by the Ministry of Health and Sanitation, the CDC, and the WHO. All these activities were performed in accordance with all applicable laws, regulations, and policies related to the protection of human participants and animals. A complete list of the members of the steering committee and the technical working group is provided in the Supplementary Appendix, available with the full text of this article at NEJM.org. Study Population, Sampling, and Eligibility CriteriaWe recruited a convenience sample of 100 male survivors from the Western Area District of Sierra Leone, which includes the capital of Freetown. We identified study participants who, at informational events that were held in conjunction with survivor associations, indicated interest in participation, as well as persons who were referred from Ebola treatment centers. Participants were eligible for inclusion if they were men 18 years of age or older, could provide an official survivor certificate issued by the Ministry of Health and Sanitation (such certificates are provided to persons with laboratory-confirmed cases of EVD when they are discharged from an Ebola treatment center), and could provide written informed consent to participate in the study. We compensated participants for each visit to the study site. The research protocol was reviewed and approved by the Sierra Leone Ethical Review Board and the WHO Ethical Review Committee. Data CollectionA member of the study team administered a questionnaire to all the participants at the time of enrollment to gather information about their EVD episode, self-reported health status, sexual behavior, and sociodemographic characteristics. The date of EVD onset was self-reported, and the date of discharge from the Ebola treatment center was ascertained from the participants’ survivor certificates. We asked participants to provide a semen specimen in a private room and provided instructions to ensure that proper infection-control procedures were followed. We gave participants pretest counseling at the time of enrollment and post-test counseling 2 weeks later when they received their individual reverse-transcriptase–polymerase-chain-reaction (RT-PCR) results. The counseling included information about the test performed, the meaning of the results, and education about sexual risk-reduction practices, including appropriate condom use and disposal. Trained counselors also offered participants a voluntary, confidential rapid test for the human immunodeficiency virus (HIV), according to the national testing algorithm. We referred participants to a clinic for survivors of EVD if it was needed, as determined by the trained medical staff of the study, or requested. Laboratory AnalysesAfter the semen specimens were collected, they were refrigerated (at 5 to 8°C) for no longer than 3 days and transported to the CDC field laboratory in Bo District, Sierra Leone. We performed quantitative RT-PCR testing using Ebola virus–specific gene targets (NP and VP40) and the human β2-microglobulin (B2M) gene, as described previously.14,15 We considered a specimen to be positive if the VP40 and NP gene targets were both detected within 40 cycles of replication. The specimen was considered to be negative if neither Ebola virus gene target was detected and the findings with respect to B2M status were positive. The findings were ruled to be indeterminate if either the VP40 or the NP gene target was detected but not both. Amplification of B2M served as an extraction control and RNA quality control. The cycle-threshold value for each gene target is reported as the number of replication cycles that had occurred when the target was first detected. Cycle-threshold values have an inverse association with virus quantity, such that higher quantities of virus in given specimens have lower cycle-threshold values.16 Statistical AnalysisWe report the number of participants who had a positive, indeterminate, or negative result on quantitative RT-PCR at enrollment according to the number of days between the self-reported onset of illness and the date that the semen specimen was obtained, rounded to the nearest whole month. Median cycle-threshold values, according to months after the onset of EVD, are reported, with the range of values observed for the NP and VP40 gene targets. Sociodemographic characteristics at baseline are also presented. Analysis of the data was performed with the use of Stata software, version 13.1 (StataCorp).

The number of new cases of Ebola virus disease (EVD) in western Africa has declined from a peak of 1063 cases in the week of October 9, 2014, to fewer than 10 confirmed cases per week for 11 consecutive weeks as of October 7, 2015.1. The main mode of transmission is direct contact with the blood or body fluids of a person with EVD or from the body of a person who died from EVD.2,3However, Ebola virus can persist in the body fluids of survivors during convalescence,4,5 which may result in transmission of the virus. The potential for the persistence of Ebola virus in the semen of male survivors raises concern regarding the possible transmission of the virus to sexual partners.6 Previously, survivors of EVD were told to practice sexual abstinence or to use a condom for 3 months after recovery. These recommendations were based on virus-isolation results from semen specimens obtained from eight survivors of EVD or Marburg virus disease in previous epidemics,5,7-10 in which the longest period that infectious virus was found in semen after the onset of symptoms was 82 days. In March 2015, a woman in Liberia received a diagnosis of EVD and her only potential exposure that could be ascertained was sexual contact with a male survivor of EVD. Further investigation found Ebola virus RNA in the survivor’s semen 199 days after the onset of his symptoms, with a genetic sequence that matched the sequence from the case patient.11 Although no infectious virus was detected in this semen specimen, the possibility that infectious Ebola virus could persist in the semen of survivors approximately 6 months after the onset of illness prompted the World Health Organization (WHO) and the Centers for Disease Control and Prevention (CDC) to revise their guidelines regarding the length of time that survivors of EVD should avoid unprotected sexual activity.12,13 There are thousands of survivors of EVD in western Africa, and many are sexually active men. Sexual transmission of the Ebola virus could possibly result in new outbreaks several weeks or months after all known chains of transmission in the region have stopped. Although the epidemiologic observations to date suggest that sexual transmission is a rare event, the Sierra Leone Ministry of Health and Sanitation, in collaboration with the Sierra Leone Ministry of Defense, the Sierra Leone Ministry of Social Welfare, Gender, and Children’s Affairs, the WHO, and the CDC initiated a study of the duration of virus persistence in the body fluids of survivors in Sierra Leone. We report initial findings from the pilot phase of the study, which investigated the persistence and viability of Ebola virus in the semen of male survivors of EVD.

ORIGINAL ARTICLE Ebola RNA Persistence in Semen of Ebola Virus Disease Survivors — Preliminary ReportGibrilla F. Deen, M.D., Barbara Knust, D.V.M., Nathalie Broutet, M.D., Ph.D., Foday R. Sesay, M.D., Pierre Formenty, D.V.M., Christine Ross, M.D., Anna E. Thorson, M.D., Ph.D., Thomas A. Massaquoi, M.D., Jaclyn E. Marrinan, M.Sc., Elizabeth Ervin, M.P.H., Amara Jambai, M.D., Suzanna L.R. McDonald, Ph.D., Kyle Bernstein, Ph.D., Alie H. Wurie, M.D., Marion S. Dumbuya, R.N., Neetu Abad, Ph.D., Baimba Idriss, M.D., Teodora Wi, Ph.D., Sarah D. Bennett, M.D., Tina Davies, M.S., Faiqa K. Ebrahim, M.D., Elissa Meites, M.D., Dhamari Naidoo, Ph.D., Samuel Smith, M.D., Anshu Banerjee, Ph.D., Bobbie Rae Erickson, M.P.H., Aaron Brault, Ph.D., Kara N. Durski, M.P.H., Jorn Winter, Ph.D., Tara Sealy, M.P.H., Stuart T. Nichol, Ph.D., Margaret Lamunu, M.D., Ute Ströher, Ph.D., Oliver Morgan, Ph.D., and Foday Sahr, M.D. http://www.nejm.org/doi/full/10.1056/NEJMoa1511410#t=article

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Interview 10:00 EDT tonight Dr. Henry L. Niman, PhDInfluenza Ready For Flu Season