niman

LOCUS KT924271 1701 bp cRNA linear VRL 14-NOV-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT924271 VERSION KT924271.1 GI:949601223 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (19-OCT-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01945243/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01945243/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1739957" /segment="4" /country="USA: North Carolina" /collection_date="24-Sep-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALN12305.1" /db_xref="GI:949601224" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRGSV NSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPSIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945243.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agctcctcaa caggtagaat atgcaatagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcatac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac ccaagaaagt 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag gggttctgtt 481 aacagtttct ttagtagatt gaattggttg tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaatcta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgagtatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggttg acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa atttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaac 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca aatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA releases September 2015 North Carolina swine sequences that match 2012 cases.

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI560131A/swine/Iowa/A01565921/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI559027A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550298A/swine/Iowa/A01410995/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI545815A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542565A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542532A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542526A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI532378A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI531061A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI531031A/swine/Illinois/A01475266/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI528443A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509751A/swine/Iowa/13H068/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509744A/swine/Iowa/13H081/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509737A/swine/Iowa/13H075/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509723A/swine/Iowa/13H082/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI505077A/swine/Illinois/A01409675/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI501536A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499940A/swine/Iowa/13H069/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499924A/swine/Iowa/13H094/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI493014A/swine/Kansas/A01377090/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI472185A/swine/Iowa/A01432840/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI467959A/swine/Ohio/A01351573/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI466711A/Illinois/03/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI465380A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI464501A/Indiana/04/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI464498A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI463731A/swine/Iowa/A01432784/2013 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446736A/swine/Ohio/A01349615/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1801.60.000000e+00979/981 (99%)EPI573013A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI557797A/swine/North Carolina/A01476771/2014 (A/H0) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI394917A/Ohio/69/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI558878A/swine/Nebraska/A01477775/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI557790A/swine/Indiana/A01476743/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI550131A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI548261A/swine/Iowa/A01476428/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545409A/swine/Iowa/A01476267/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542449A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538957A/swine/South Dakota/A01481811/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538672A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI534946A/swine/Iowa/A01501240/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI530308A/swine/North Carolina/A01410321/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528007A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528003A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528000A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI527093A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509772A/swine/Indiana/A01260424/2013 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI502745A/swine/Iowa/A01290820/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI493691A/swine/Iowa/13E045/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492999A/swine/Illinois/A01394861/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492969A/swine/Illinois/A01394862/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI487345A/swine/Illinois/A01392224/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI467962A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI461015A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI460762A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00975/976 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433280A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI427192A/swine/Indiana/A01260169/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406574A/swine/Iowa/A01203863/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406471A/swine/Indiana/A01260041/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406468A/swine/Indiana/A01260029/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401623A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401619A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI400107A/swine/Indiana/A00968308/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI400104A/swine/Indiana/A00968397/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398529A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398503A/swine/Ohio/A01133466/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398150A/swine/Ohio/25/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398039A/West Virginia/09/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398038A/Ohio/38/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397940A/Ohio/81/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397921A/Ohio/18/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397746A/Ohio/87/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397558A/Wisconsin/29/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397543A/Ohio/83/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397527A/Ohio/47/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397519A/Ohio/44/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397499A/Indiana/104/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397407A/Michigan/16/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397399A/Indiana/99/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397391A/Indiana/93/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397380A/Indiana/138/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397373A/Indiana/123/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397218A/Indiana/144/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397087A/Indiana/52/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI669265A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI669263A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001392/1411 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001391/1411 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI573600A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573810A/swine/Indiana/A01840344/2014 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2484.90.000000e+001388/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI647585A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI641459A/swine/Minnesota/A01847917/2015 (A/H1N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001390/1412 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545417A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001389/1411 (98%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI488006A/swine/USA/A01291038/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI440750A/swine/Indiana/A01432492/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2481.20.000000e+001385/1406 (98%)EPI663314A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI557543A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001375/1392 (98%)EPI557533A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001375/1392 (98%)EPI545859A/swine/North Carolina/A01476419/2014 (A/H0) segment 6 (NA)2477.50.000000e+001389/1412 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI669262A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 4 (HA)3131.20.000000e+001699/1701 (99%)EPI669264A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 4 (HA)3129.30.000000e+001698/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001677/1702 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001674/1699 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001675/1702 (98%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)2979.80.000000e+001669/1698 (98%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)2950.20.000000e+001666/1701 (97%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2942.80.000000e+001665/1701 (97%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2941.00.000000e+001664/1700 (97%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2939.10.000000e+001663/1699 (97%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1701 (97%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393298A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI392748A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI392735A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)

LOCUS KT936552 1701 bp cRNA linear VRL 14-NOV-2015 DEFINITION Influenza A virus (A/swine/Minnesota/A01940427/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT936552 VERSION KT936552.1 GI:949601289 KEYWORDS . SOURCE Influenza A virus (A/swine/Minnesota/A01940427/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Minnesota/A01940427/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) CONSRTM Swine Surveillance TITLE Direct Submission JOURNAL Submitted (20-OCT-2015) NAHLN Voluntary Swine Influenza Surveillance, USDA, 1920 Dayton Ave., Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Minnesota/A01940427/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Minnesota/A01940427/2015" /serotype="H3N2" /host="swine" /db_xref="taxon:1740825" /segment="4" /country="USA: Minnesota" /collection_date="21-Sep-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALN12343.1" /db_xref="GI:949601290" /translation="MKTIIAFSCVLCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRDSV NSFFSRLNWLHNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPDGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR SEALNNRFQIKGIQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01940427.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcgtt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgata acagcatggc aacgctgtgc ctaggacacc acgcagtacc aaacggaaca 121 ttagtgaaaa caatcacgga tgatcaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa ttcttgatgg aaaaaattgc 241 acattgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac tcaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag ggattctgtt 481 aacagtttct ttagtagatt gaattggttg cataacttaa attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtttcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca caggaaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaatca tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 gatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 aacaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga tatgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatggc 1501 acttatgacc atgatatata cagaagcgag gcattaaata atcggttcca gatcaaaggt 1561 attcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA has released September 2015 Minnesota swine sequences which match 2012 cases.

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI560131A/swine/Iowa/A01565921/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI559027A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550298A/swine/Iowa/A01410995/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI545815A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542565A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542532A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542526A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI532378A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI531061A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI531031A/swine/Illinois/A01475266/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI528443A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509751A/swine/Iowa/13H068/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509744A/swine/Iowa/13H081/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509737A/swine/Iowa/13H075/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509723A/swine/Iowa/13H082/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI505077A/swine/Illinois/A01409675/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI501536A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499940A/swine/Iowa/13H069/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499924A/swine/Iowa/13H094/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI493014A/swine/Kansas/A01377090/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI472185A/swine/Iowa/A01432840/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI467959A/swine/Ohio/A01351573/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI466711A/Illinois/03/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI465380A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI464501A/Indiana/04/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI464498A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI463731A/swine/Iowa/A01432784/2013 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI446736A/swine/Ohio/A01349615/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1801.60.000000e+00979/981 (99%)EPI573013A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI557797A/swine/North Carolina/A01476771/2014 (A/H0) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI394917A/Ohio/69/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI558878A/swine/Nebraska/A01477775/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI557790A/swine/Indiana/A01476743/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI550131A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI548261A/swine/Iowa/A01476428/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545409A/swine/Iowa/A01476267/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542449A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538957A/swine/South Dakota/A01481811/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI538672A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI534946A/swine/Iowa/A01501240/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI530308A/swine/North Carolina/A01410321/2014 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528007A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528003A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528000A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI527093A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509772A/swine/Indiana/A01260424/2013 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI502745A/swine/Iowa/A01290820/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI493691A/swine/Iowa/13E045/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492999A/swine/Illinois/A01394861/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492969A/swine/Illinois/A01394862/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI487345A/swine/Illinois/A01392224/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI467962A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI461015A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI460762A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00975/976 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433280A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI427192A/swine/Indiana/A01260169/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406574A/swine/Iowa/A01203863/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406471A/swine/Indiana/A01260041/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI406468A/swine/Indiana/A01260029/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401623A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401619A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI400107A/swine/Indiana/A00968308/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI400104A/swine/Indiana/A00968397/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398529A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398503A/swine/Ohio/A01133466/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398150A/swine/Ohio/25/2012 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398039A/West Virginia/09/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398038A/Ohio/38/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397940A/Ohio/81/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397921A/Ohio/18/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397746A/Ohio/87/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397558A/Wisconsin/29/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397543A/Ohio/83/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397527A/Ohio/47/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397519A/Ohio/44/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397499A/Indiana/104/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397407A/Michigan/16/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397399A/Indiana/99/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397391A/Indiana/93/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397380A/Indiana/138/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397373A/Indiana/123/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397218A/Indiana/144/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397087A/Indiana/52/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI669265A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI669263A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573600A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573810A/swine/Indiana/A01840344/2014 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2495.90.000000e+001390/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI647585A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI641459A/swine/Minnesota/A01847917/2015 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001392/1412 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI545417A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001391/1411 (98%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI488006A/swine/USA/A01291038/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI440750A/swine/Indiana/A01432492/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2492.30.000000e+001387/1406 (98%)EPI663314A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI545859A/swine/North Carolina/A01476419/2014 (A/H0) segment 6 (NA)2488.60.000000e+001391/1412 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI669264A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 4 (HA)3134.90.000000e+001701/1701 (100%)EPI669262A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 4 (HA)3129.30.000000e+001698/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001681/1701 (98%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001680/1701 (98%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1701 (98%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3024.10.000000e+001679/1701 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001677/1701 (98%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001677/1701 (98%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3007.50.000000e+001676/1701 (98%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3007.50.000000e+001676/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001674/1699 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001676/1702 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1701 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001674/1701 (98%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001674/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)2996.40.000000e+001674/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1702 (98%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001673/1701 (98%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)2990.80.000000e+001673/1701 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001672/1701 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001672/1701 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001672/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001671/1701 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)2977.90.000000e+001670/1701 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)2977.90.000000e+001668/1698 (98%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001670/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001669/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001669/1701 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001669/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)2968.70.000000e+001669/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001668/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001668/1701 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)2963.10.000000e+001669/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)2961.30.000000e+001667/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)2961.30.000000e+001667/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)2961.30.000000e+001667/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)2961.30.000000e+001667/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001667/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)2953.90.000000e+001666/1701 (97%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)2952.10.000000e+001666/1701 (97%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)2952.10.000000e+001666/1701 (97%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)2952.10.000000e+001666/1701 (97%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)2948.40.000000e+001665/1701 (97%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2948.40.000000e+001665/1700 (97%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2948.40.000000e+001665/1700 (97%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2948.40.000000e+001665/1700 (97%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2948.40.000000e+001665/1700 (97%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)2946.50.000000e+001665/1701 (97%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)2946.50.000000e+001665/1701 (97%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)2946.50.000000e+001665/1701 (97%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2942.80.000000e+001664/1700 (97%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2941.00.000000e+001664/1701 (97%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001663/1700 (97%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2937.30.000000e+001662/1699 (97%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1701 (97%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI393298A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI392748A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)EPI392735A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA)2937.30.000000e+001663/1700 (97%)

LOCUS KT825135 1701 bp cRNA linear VRL 21-OCT-2015 DEFINITION Influenza A virus (A/swine/Minnesota/A01940148/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT825135 VERSION KT825135.1 GI:939129642 KEYWORDS . SOURCE Influenza A virus (A/swine/Minnesota/A01940148/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Minnesota/A01940148/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) CONSRTM Swine Surveillance TITLE Direct Submission JOURNAL Submitted (25-SEP-2015) NAHLN Voluntary Swine Influenza Surveillance, USDA, 1920 Dayton Ave., Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Minnesota/A01940148/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Minnesota/A01940148/2015" /serotype="H3N2" /host="swine" /db_xref="taxon:1728937" /segment="4" /country="USA: Minnesota" /collection_date="24-Aug-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALJ54647.1" /db_xref="GI:939129643" /translation="MKTIIAFSCVLCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRDSV NSFFSRLNWLHNLNYKYPEQNXTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QXGKSSIMRSDAHIDECNSECITPDGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR SEALNNRFQIKGIQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01940148.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcgtt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgata acagcatggc aacgctgtgc ctaggacacc acgcagtacc aaacggaaca 121 ttagtgaaaa caatcacgga tgatcaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa ttcttgatgg gaaaaattgc 241 acattgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac tcaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag ggattctgtt 481 aacagtttct ttagtagatt gaattggttg cataacttaa attacaagta tccagaacag 541 aacrtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtttcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca caggaaatct aattgcccct cggggttact tcaaaataca aartgggaaa 841 agctcaatca tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 gatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 aacaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga tatgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatggc 1501 acttatgacc atgatatata cagaagcgag gcattaaata atcggttcca gatcaaaggt 1561 attcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA has released August 2015 Minnesota swine sequences which match 2012 cases.

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI586064A/swine/Iowa/A01478820/2015 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI568714A/swine/Missouri/A01555163/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI531099A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573471A/swine/Iowa/A01840226/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI620634A/swine/Iowa/A01554775/2015 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI597642A/swine/Iowa/A01476877/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI597636A/swine/Iowa/A01476878/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI559571A/swine/Iowa/A01476715/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI559214A/swine/Minnesota/A01483483/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI557798A/swine/Minnesota/A01566467/2014 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI545854A/swine/Iowa/A01476426/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI538922A/swine/Minnesota/A01501738/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI530311A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI508898A/swine/Illinois/A01409928/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI508860A/swine/Illinois/A01410110/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI508838A/swine/Illinois/A01409932/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI505041A/swine/Illinois/A01410018/2013 (A/H0) segment 7 (MP)1785.00.000000e+00976/982 (99%)EPI671794A/swine/Illinois/A01857433/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI597693A/swine/Minnesota/A01566612/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI586040A/swine/Illinois/A01555570/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI586004A/swine/Iowa/A01489235/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI573740A/swine/Indiana/A01260735/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI568683A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI558900A/swine/Iowa/A01566473/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI558864A/swine/Iowa/A01477772/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI545778A/swine/Minnesota/A01565282/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530301A/swine/Illinois/A01410453/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530286A/swine/Illinois/A01475190/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI663318A/swine/Illinois/A01770246/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI654000A/swine/Minnesota/A01823864/2015 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI645061A/swine/Indiana/A01260926/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI642508A/Michigan/39/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI641413A/swine/Minnesota/A01822846/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600311A/swine/Minnesota/A01566625/2014 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI597690A/swine/Minnesota/A01566287/2014 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559529A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559027A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI550298A/swine/Iowa/A01410995/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI545880A/swine/Minnesota/A01482977/2014 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI545815A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542565A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542532A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542526A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI532378A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI531061A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI531031A/swine/Illinois/A01475266/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI528443A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509751A/swine/Iowa/13H068/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509744A/swine/Iowa/13H081/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509737A/swine/Iowa/13H075/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509723A/swine/Iowa/13H082/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI505077A/swine/Illinois/A01409675/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00976/983 (99%)EPI502748A/swine/USA/A01409276/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI501536A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI499940A/swine/Iowa/13H069/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI499924A/swine/Iowa/13H094/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI493014A/swine/Kansas/A01377090/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI472185A/swine/Iowa/A01432840/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI467959A/swine/Ohio/A01351573/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI466711A/Illinois/03/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI465380A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI464501A/Indiana/04/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI464498A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI463731A/swine/Iowa/A01432784/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446736A/swine/Ohio/A01349615/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1773.90.000000e+00974/981 (99%)EPI573013A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI557797A/swine/North Carolina/A01476771/2014 (A/H0) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI641619A/swine/Illinois/A02024907/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI641537A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI641534A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI623699A/swine/Indiana/A01260874/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI623637A/swine/Iowa/A02077681/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI620647A/swine/Illinois/A02077350/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI620501A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612540A/swine/Arkansas/A02076387/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612537A/swine/Arkansas/A02076547/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612516A/swine/Ohio/A02077256/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI600301A/swine/South Dakota/A01483859/2014 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI597684A/swine/Minnesota/A01566458/2014 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI590670A/swine/Oklahoma/A01841728/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586162A/swine/Oklahoma/A01841015/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586159A/swine/Arkansas/A01841034/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586150A/swine/Arkansas/A01841049/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586147A/swine/Oklahoma/A01841014/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586144A/swine/Illinois/A01478910/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586138A/swine/Oklahoma/A01841022/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586135A/swine/Arkansas/A01841004/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586123A/swine/Oklahoma/A01478925/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586120A/swine/Oklahoma/A01478965/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586070A/swine/Indiana/A01840743/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI586016A/swine/Illinois/A01840755/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584816A/swine/Indiana/A02077077/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584795A/swine/Arkansas/A01841343/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584792A/swine/Indiana/A02077078/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584742A/swine/Arkansas/A01841266/2015 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI584736A/swine/Illinois/A01555638/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI560131A/swine/Iowa/A01565921/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI558878A/swine/Nebraska/A01477775/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI557790A/swine/Indiana/A01476743/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI550131A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI548261A/swine/Iowa/A01476428/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI545409A/swine/Iowa/A01476267/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI542449A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI538957A/swine/South Dakota/A01481811/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI538672A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI534946A/swine/Iowa/A01501240/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI528007A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI528003A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI528000A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI527093A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI509772A/swine/Indiana/A01260424/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI502745A/swine/Iowa/A01290820/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI493691A/swine/Iowa/13E045/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492999A/swine/Illinois/A01394861/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492969A/swine/Illinois/A01394862/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI586063A/swine/Iowa/A01478820/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI597692A/swine/Minnesota/A01566612/2014 (A/H1N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI573470A/swine/Iowa/A01840226/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI558899A/swine/Iowa/A01566473/2014 (A/H1N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI597689A/swine/Minnesota/A01566287/2014 (A/H1N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI600310A/swine/Minnesota/A01566625/2014 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI590498A/swine/Minnesota/A01470654/2015 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI545881A/swine/Minnesota/A01482977/2014 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI545777A/swine/Minnesota/A01565282/2014 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542568A/swine/South Dakota/A01482581/2014 (A/H1N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI538921A/swine/Minnesota/A01501738/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI531098A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI623636A/swine/Iowa/A02077681/2015 (A/H1N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI600302A/swine/South Dakota/A01483859/2014 (A/H1N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI586093A/swine/Minnesota/A01489541/2015 (A/H1N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI641412A/swine/Minnesota/A01822846/2015 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI612581A/swine/Illinois/A01554475/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI612536A/swine/Arkansas/A02076547/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI612518A/swine/Arkansas/A02076312/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI612515A/swine/Ohio/A02077256/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586161A/swine/Oklahoma/A01841015/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586146A/swine/Oklahoma/A01841014/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586143A/swine/Illinois/A01478910/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586134A/swine/Arkansas/A01841004/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586131A/swine/Illinois/A01478979/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586122A/swine/Oklahoma/A01478925/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586119A/swine/Oklahoma/A01478965/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586069A/swine/Indiana/A01840743/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586036A/swine/Indiana/A01840753/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586033A/swine/Arkansas/A01840760/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI586015A/swine/Illinois/A01840755/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI584741A/swine/Arkansas/A01841266/2015 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI573573A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI558863A/swine/Iowa/A01477772/2014 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI612557A/swine/Illinois/A02077158/2015 (A/H1N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI671811A/swine/Indiana/A02025965/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI653058A/swine/Indiana/A01260910/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI653037A/swine/Indiana/A01260906/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI653023A/swine/Indiana/A01260885/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI653016A/swine/Indiana/A01260888/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI641835A/swine/Illinois/A02034146/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI641618A/swine/Illinois/A02024907/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI641542A/swine/Arkansas/A02035008/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI621372A/swine/Illinois/A01820488/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI612719A/swine/Illinois/A01820457/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI597683A/swine/Minnesota/A01566458/2014 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI590669A/swine/Oklahoma/A01841728/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI586158A/swine/Arkansas/A01841034/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI586149A/swine/Arkansas/A01841049/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI586137A/swine/Oklahoma/A01841022/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI584791A/swine/Indiana/A02077078/2015 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI538991A/swine/Michigan/A01410962/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI620509A/swine/Oklahoma/A02076844/2015 (A/H1N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI612539A/swine/Arkansas/A02076387/2015 (A/H1N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI584815A/swine/Indiana/A02077077/2015 (A/H1N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI573440A/swine/Missouri/A01555163/2014 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI669219A/swine/Arkansas/A01770795/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI641536A/swine/Arkansas/A02024832/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI623695A/swine/Indiana/A01260875/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI620615A/swine/Indiana/A02024006/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI620609A/swine/Indiana/A02077457/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI620541A/swine/Indiana/A02077486/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI620500A/swine/Oklahoma/A02076821/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI590795A/swine/Illinois/A01470861/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI584794A/swine/Arkansas/A01841343/2015 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573052A/swine/Iowa/A01840061/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545853A/swine/Iowa/A01476426/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI508859A/swine/Illinois/A01410110/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI669234A/swine/Oklahoma/A01857063/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI669228A/swine/Iowa/A02025827/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI620646A/swine/Illinois/A02077350/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI612725A/swine/Illinois/A01820414/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI612549A/swine/Illinois/A01471010/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510215A/swine/Illinois/A01475015/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510200A/swine/Illinois/A01410268/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510191A/swine/Illinois/A01411463/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI510174A/swine/Illinois/A01411461/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI641533A/swine/Oklahoma/A02024960/2015 (A/H1N2) segment 6 (NA)2495.90.000000e+001390/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2495.90.000000e+001390/1410 (98%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2495.90.000000e+001390/1410 (98%)EPI669140A/swine/Oklahoma/A01770672/2015 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI663396A/swine/Illinois/A01769612/2015 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI647529A/swine/Illinois/A02025282/2015 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI620706A/swine/Illinois/A01470835/2015 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI586039A/swine/Illinois/A01555570/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI573739A/swine/Indiana/A01260735/2014 (A/H1N2) segment 6 (NA)2494.10.000000e+001391/1411 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI663399A/swine/Iowa/A02025573/2015 (A/H1N2) segment 6 (NA)2492.30.000000e+001389/1410 (98%)EPI647508A/swine/Illinois/A02025300/2015 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI645060A/swine/Indiana/A01260926/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI645052A/swine/Illinois/A02090176/2015 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI641444A/swine/Indiana/A02077934/2015 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI623685A/swine/Illinois/A01822445/2015 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI459619A/swine/Michigan/A01432678/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI586062A/swine/Iowa/A01478820/2015 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI573469A/swine/Iowa/A01840226/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1701 (99%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI393298A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI392696A/Indiana/43/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI392693A/Indiana/38/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI388362A/Indiana/16/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI394060A/Indiana/38/2012 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI392699A/Indiana/46/2012 (A/H3N2) segment 4 (HA)2985.30.000000e+001672/1701 (98%)EPI533925A/swine/South Dakota/A01481392/2014 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397404A/Indiana/99/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI396239A/Indiana/103/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI395251A/Indiana/152/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI394063A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI392705A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001671/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI397204A/Indiana/21/2012 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI509753A/swine/Nebraska/A01491558/2014 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI488005A/swine/USA/A01291038/2013 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001672/1702 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001672/1702 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI392748A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI392735A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI414156A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI397562A/Wisconsin/29/2012 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI397206A/Ohio/34/2012 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI396277A/Indiana/135/2012 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI396200A/Ohio/79/2012 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI388290A/Indiana/17/2012 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI506265A/swine/Nebraska/A01395901/2013 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI493688A/swine/Iowa/13E045/2013 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI446871A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI446838A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI443542A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI443534A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI443518A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI443510A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI440751A/swine/Indiana/A01432492/2013 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI427184A/swine/Indiana/A01260163/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI426908A/swine/Iowa/A01432308/2013 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI407279A/Minnesota/18/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI401687A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI401676A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI400095A/swine/Indiana/A00968390/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI398040A/Ohio/57/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI397912A/Indiana/114/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI397654A/Indiana/90/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI397555A/Ohio/86/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI397211A/Indiana/113/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI396291A/Ohio/63/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI395956A/swine/Indiana/A00968379/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI395948A/swine/Indiana/A00968376/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI395940A/swine/Indiana/A00968373/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI395932A/swine/Indiana/A00968370/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI395740A/swine/Indiana/A00968386/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI394069A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI378523A/Indiana/09/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI378515A/Indiana/07/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI378502A/Indiana/07/2012 (A/H3N2) segment 4 (HA)2972.40.000000e+001671/1702 (98%)EPI392684A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2970.50.000000e+001669/1701 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI530344A/swine/Iowa/A01480817/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI509734A/swine/Iowa/13H075/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI508811A/swine/Minnesota/A01366913/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI506274A/swine/Nebraska/A01393702/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI443109A/swine/Ohio/A01349495/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI443106A/swine/Ohio/A01349485/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI443099A/swine/Ohio/A01349302/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI443096A/swine/Ohio/A01349305/2013 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI400101A/swine/Indiana/A00968397/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001670/1702 (98%)EPI397961A/Ohio/88/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI397759A/Wisconsin/35/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI397412A/Michigan/16/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI397106A/Indiana/115/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI397092A/Indiana/57/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI396246A/Indiana/125/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI396230A/Indiana/147/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395891A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395858A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395850A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395732A/swine/Indiana/A01104030/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395725A/swine/Indiana/A01104029/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395335A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001668/1701 (98%)EPI393661A/Ohio/62/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI392708A/Indiana/59/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI392934A/Minnesota/11/2012 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI392711A/Indiana/60/2012 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI515309A/swine/Kansas/13-152087/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI508788A/swine/Nebraska/A01491325/2014 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI506253A/swine/Nebraska/A01395921/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI492947A/swine/Iowa/A01365608/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI492437A/swine/Iowa/A01364803/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI472195A/swine/Iowa/A01432817/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001669/1702 (98%)EPI472183A/swine/Iowa/A01432840/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI460375A/swine/Indiana/A01260280/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI453566A/swine/Indiana/A01260230/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI446735A/swine/Ohio/A01349615/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI406469A/swine/Indiana/A01260041/2012 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI397677A/Ohio/83/2012 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI395331A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2957.60.000000e+001667/1701 (98%)EPI550128A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI550079A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI546878A/swine/Ohio/13TOSU1560/2013 (A/H0) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI539058A/swine/South Dakota/A01481928/2014 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI527985A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI527981A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI527090A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI527085A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI504870A/swine/Iowa/A01290867/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI502658A/swine/Minnesota/A01409450/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI499946A/swine/Iowa/13H087/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI484447A/swine/North Carolina/A01364613/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI484441A/swine/Ohio/A01364406/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI482825A/Iowa/04/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI468206A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI468198A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI467958A/swine/Ohio/A01351573/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI465422A/Indiana/05/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI465420A/Indiana/17/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI465391A/Indiana/09/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI465382A/Indiana/05/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI465379A/Indiana/17/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI464503A/Indiana/04/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI464500A/Indiana/05/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI462227A/Indiana/15/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI461883A/Indiana/09/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI460974A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001668/1702 (98%)EPI459618A/swine/Michigan/A01432678/2013 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI457281A/swine/Korea/CY02-08/2012 (A/H3N1) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI457109A/swine/Korea/CY02-07/2012 (A/H3N1) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)

LOCUS KT924265 1701 bp cRNA linear VRL 14-NOV-2015 DEFINITION Influenza A virus (A/swine/Iowa/A01944211/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KT924265 VERSION KT924265.1 GI:949601209 KEYWORDS . SOURCE Influenza A virus (A/swine/Iowa/A01944211/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Iowa/A01944211/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (19-OCT-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Iowa/A01944211/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Iowa/A01944211/2015" /serotype="H3N2" /isolation_source="oral fluid" /host="swine" /db_xref="taxon:1739956" /segment="4" /country="USA: Iowa" /collection_date="28-Sep-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALN12297.1" /db_xref="GI:949601210" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKEWDL FVERSTAYSNCYPYYVPDYATLRSLVASSGNLEFTQESFNWTGVAQDGSSYACRRGSV KSFFSRLNWLHNLDYKYPEQNVTMPNNDEFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIHWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPNGSISNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQARGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLESTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEXEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYNHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGSIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01944211.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctaa ttttcgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctgggacacc atgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caaggaatgg 301 gaccttttcg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgccaccc ttagatcact agttgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagttatg cctgcagaag aggatctgtt 481 aaaagtttct tcagtagatt gaattggttg cataacctgg attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacgaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaggacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtgtcca gcataataag catccattgg acgatagtaa aaccgggtga catactcttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca tttccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccttg aaattggcta caggaatgcg aaatgtacca 1021 gagaaacaag ctagaggcat attcggtgca attgcaggtt tcatagaaaa tggttgggaa 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac tggacaagca 1141 gcagatcttg aaagcactca agcagcaatc aaccaaatca ccggaaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctctga artagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aatgcctgca taggatcaat cagaaatgga 1501 acttataacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa aatcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggtcc attatgtggg cttgccaaaa aggcaacatt 1681 aggtgcaaca tttgcatttg a

USDA has released Iowa swine sequences from a September 28 collection which matches human 2012 cases.

LOCUS KT828669 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-9 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828669 VERSION KT828669.1 GI:939129427 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-9" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54525.1" /db_xref="GI:939129428" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga

LOCUS KT828668 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-6 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828668 VERSION KT828668.1 GI:939129425 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-6" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54524.1" /db_xref="GI:939129426" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga

LOCUS KT828667 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-5 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828667 VERSION KT828667.1 GI:939129423 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-5" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54523.1" /db_xref="GI:939129424" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KT828669.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-9 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828669.1Select seq gb|KT828668.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-6 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828668.1Select seq gb|KT828667.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-5 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828667.1Select seq gb|KT828666.1|Middle East respiratory syndrome coronavirus isolate Abudhabi-3 ORF1a (ORF1a) gene, partial cds11181118100%0.0100%KT828666.1Select seq gb|KT225476.2|Middle East respiratory syndrome coronavirus isolate MERS-CoV/THA/CU/17_06_2015, complete genome11181118100%0.0100%KT225476.2Select seq gb|KT156561.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2874_2013, complete genome11181118100%0.0100%KT156561.1Select seq gb|KT156560.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2285_2013, complete genome11181118100%0.0100%KT156560.1Select seq gb|KT026456.1|Middle East respiratory syndrome coronavirus isolate Hu/Riyadh_KSA_4050_2015, complete genome11181118100%0.0100%KT026456.1Select seq gb|KT026454.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_4050_2015, complete genome11181118100%0.0100%KT026454.1Select seq gb|KT026453.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_2959_2015, complete genome11181118100%0.0100%KT026453.1Select seq gb|KR011266.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2049/2015, complete genome11181118100%0.0100%KR011266.1Select seq gb|KR011265.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2466/2015, complete genome11181118100%0.0100%KR011265.1Select seq gb|KR011264.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2343/2015, complete genome11181118100%0.0100%KR011264.1Select seq gb|KR011263.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2345/2015, complete genome11181118100%0.0100%KR011263.1Select seq gb|KJ361503.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_Isolate_Sanger, complete genome11181118100%0.0100%KJ361503.1Select seq gb|KJ361502.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_InSpu_Sanger, complete genome11181118100%0.0100%KJ361502.1Select seq gb|KJ361501.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_IS_HTS, complete genome11181118100%0.0100%KJ361501.1Select seq gb|KJ361500.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_Sanger, complete genome11181118100%0.0100%KJ361500.1Select seq gb|KJ361499.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_HTS, partial genome11181118100%0.0100%KJ361499.1Select seq gb|KP719933.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1209/2014, complete genome11181118100%0.0100%KP719933.1Select seq gb|KP719932.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1243.12/2014, complete genome11181118100%0.0100%KP719932.1Select seq gb|KP719931.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1339.2/2014, complete genome11181118100%0.0100%KP719931.1Select seq gb|KP719930.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.14/2014, complete genome11181118100%0.0100%KP719930.1Select seq gb|KP719928.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.10/2014, complete genome11181118100%0.0100%KP719928.1Select seq gb|KP719927.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.9/2014, complete genome11181118100%0.0100%KP719927.1Select seq gb|KM210278.1|Middle East respiratory syndrome coronavirus isolate England/3/2013, complete genome11181118100%0.0100%KM210278.1Select seq gb|KM210277.1|Middle East respiratory syndrome coronavirus isolate England/4/2013, complete genome11181118100%0.0100%KM210277.1Select seq gb|KP209310.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi/Gayathi_UAE_2_2014, complete genome11181118100%0.0100%KP209310.1Select seq gb|KP209308.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_16_2014, complete genome11181118100%0.0100%KP209308.1Select seq gb|KM015348.1|Middle East respiratory syndrome coronavirus isolate England/2/2013, complete genome11181118100%0.0100%KM015348.1Select seq gb|KJ650098.1|Middle East respiratory syndrome coronavirus isolate Camel/Qatar_2_2014, complete genome11181118100%0.0100%KJ650098.1Select seq gb|KJ713299.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-376, complete genome11181118100%0.0100%KJ713299.1Select seq gb|KJ713297.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-503, complete genome11181118100%0.0100%KJ713297.1Select seq gb|KJ713296.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-378, complete genome11181118100%0.0100%KJ713296.1Select seq gb|KJ713295.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-505, complete genome11181118100%0.0100%KJ713295.1Select seq gb|KJ598495.1|Middle East respiratory syndrome coronavirus isolate Qatar_1_2013-2 ORF1a gene, partial cds11181118100%0.0100%KJ598495.1Select seq gb|KJ650297.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 1, complete genome11181118100%0.0100%KJ650297.1Select seq gb|KJ650296.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 19Dam, complete genome11181118100%0.0100%KJ650296.1Select seq gb|KJ650295.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 13, complete genome11181118100%0.0100%KJ650295.1Select seq gb|KJ156947.1|Middle East respiratory syndrome coronavirus isolate Riyadh_6b_2013 ORF1a gene, partial cds11181118100%0.0100%KJ156947.1Select seq gb|KJ156946.1|Middle East respiratory syndrome coronavirus isolate Riyadh_11a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11181118100%0.0100%KJ156946.1Select seq gb|KJ156937.1|Middle East respiratory syndrome coronavirus isolate Riyadh_7a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11181118100%0.0100%KJ156937.1Select seq gb|KJ156896.1|Middle East respiratory syndrome coronavirus isolate Taif_2a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11181118100%0.0100%KJ156896.1Select seq gb|KJ156895.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_4b_2013 ORF1ab and ORF1a genes, partial cds11181118100%0.0100%KJ156895.1Select seq gb|KJ156894.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_23b_2013 ORF1ab and ORF1a genes, partial cds11181118100%0.0100%KJ156894.1Select seq gb|KJ156942.1|Middle East respiratory syndrome coronavirus isolate Riyadh_8b_2013, partial genome11181118100%0.0100%KJ156942.1Select seq gb|KJ156934.1|Middle East respiratory syndrome coronavirus isolate Riyadh_14_2013, complete genome11181118100%0.0100%KJ156934.1Select seq gb|KJ156866.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_25_2013, complete genome11181118100%0.0100%KJ156866.1Select seq gb|KF961222.1|Middle East respiratory syndrome coronavirus isolate Qatar4, complete genome11181118100%0.0100%KF961222.1Select seq gb|KF961221.1|Middle East respiratory syndrome coronavirus isolate Qatar3, complete genome11181118100%0.0100%KF961221.1Select seq gb|KF745068.1|Middle East respiratory syndrome coronavirus isolate FRA/UAE, complete genome11181118100%0.0100%KF745068.1Select seq gb|KF600654.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_9b_2013, partial genome11181118100%0.0100%KF600654.1Select seq gb|KF600652.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2_2012, complete genome11181118100%0.0100%KF600652.1Select seq gb|KF600651.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_18_2013, complete genome11181118100%0.0100%KF600651.1Select seq gb|KF600646.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_11b_2013, partial genome11181118100%0.0100%KF600646.1Select seq gb|KF600645.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_15_2013, complete genome11181118100%0.0100%KF600645.1Select seq gb|KF600644.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_16_2013, complete genome11181118100%0.0100%KF600644.1Select seq gb|KF600638.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_8b_2013, partial genome11181118100%0.0100%KF600638.1Select seq gb|KF600634.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_21_2013, complete genome11181118100%0.0100%KF600634.1Select seq gb|KF600628.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_1_2013, complete genome11181118100%0.0100%KF600628.1Select seq gb|KF600627.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_12_2013, complete genome11181118100%0.0100%KF600627.1Select seq gb|KF600615.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_14a_2013, partial genome11181118100%0.0100%KF600615.1Select seq gb|KF186565.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_3_2013, complete genome11181118100%0.0100%KF186565.1Select seq gb|KF186567.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome11181118100%0.0100%KF186567.1Select seq gb|KF186566.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_2_2013, complete genome11181118100%0.0100%KF186566.1Select seq gb|KF186564.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_4_2013, complete genome11181118100%0.0100%KF186564.1Select seq gb|KP719929.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.11/2014, complete genome11141114100%0.099%KP719929.1Select seq gb|KP209306.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_8_2014, complete genome11141114100%0.099%KP209306.1Select seq gb|KP223131.1|Middle East respiratory syndrome coronavirus isolate Florida/USA-2_Saudi Arabia_2014, complete genome11121112100%0.099%KP223131.1Select seq gb|KP209313.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_26_2014, complete genome11121112100%0.099%KP209313.1Select seq gb|KP209309.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_30_2014, complete genome11121112100%0.099%KP209309.1Select seq gb|KP209307.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_18_2014, complete genome11121112100%0.099%KP209307.1Select seq gb|KM027262.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_683/KSA/2014, complete genome11121112100%0.099%KM027262.1Select seq gb|KM027261.1|Middle East respiratory syndrome coronavirus isolate Makkah_C9355/KSA/Makkah/2014-04-15, complete genome11121112100%0.099%KM027261.1Select seq gb|KM027260.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C10306/KSA/2014-04-20, complete genome11121112100%0.099%KM027260.1Select seq gb|KM027259.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C9055/KSA/2014-04-14, complete genome11121112100%0.099%KM027259.1Select seq gb|KM027258.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8826/KSA/2014-04-12, complete genome11121112100%0.099%KM027258.1Select seq gb|KM027257.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7770/KSA/2014-04-07, complete genome11121112100%0.099%KM027257.1Select seq gb|KM027256.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7569/KSA/2014-04-03, complete genome11121112100%0.099%KM027256.1Select seq gb|KM027255.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7149/KSA/2014-04-05, complete genome11121112100%0.099%KM027255.1Select seq gb|KJ829365.1|Middle East respiratory syndrome coronavirus strain Florida/USA-2_Saudi Arabia_2014, complete genome11121112100%0.099%KJ829365.1Select seq gb|KJ813439.1|Middle East respiratory syndrome coronavirus strain Indiana/USA-1_Saudi Arabia_2014, complete genome11121112100%0.099%KJ813439.1Select seq gb|KJ713298.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-363, complete genome11121112100%0.099%KJ713298.1Select seq gb|KJ573790.1|Middle East respiratory syndrome coronavirus ORF1a2 gene, partial cds11121112100%0.099%KJ573790.1Select seq gb|KJ156951.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_5a_2013 ORF1a gene, partial cds11121112100%0.099%KJ156951.1Select seq gb|KJ156941.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_26b_2013 ORF1ab gene, partial cds11121112100%0.099%KJ156941.1Select seq gb|KJ156943.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_27a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156943.1Select seq gb|KJ156926.1|Middle East respiratory syndrome coronavirus isolate Riyadh_12a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156926.1Select seq gb|KJ156918.1|Middle East respiratory syndrome coronavirus isolate Riyadh_17a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156918.1Select seq gb|KJ156891.1|Middle East respiratory syndrome coronavirus isolate Riyadh_10a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156891.1Select seq gb|KJ156888.1|Middle East respiratory syndrome coronavirus isolate Riyadh_13a_2013 ORF1ab gene, partial cds; and ORF1a gene, complete cds11121112100%0.099%KJ156888.1Select seq gb|KJ156916.1|Middle East respiratory syndrome coronavirus isolate Madinah_3b_2013, partial genome11121112100%0.099%KJ156916.1Select seq gb|KJ156910.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_2_2013, complete genome11121112100%0.099%KJ156910.1Select seq gb|KJ156874.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_6_2013, complete genome11121112100%0.099%KJ156874.1Select seq gb|KJ156869.1|Middle East respiratory syndrome coronavirus isolate Riyadh_9_2013, complete genome11121112100%0.099%KJ156869.1Select seq gb|KF600655.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_7a_2013, partial genome11121112100%0.099%KF600655.1Select seq gb|KF600647.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_17_2013, complete genome11121112100%0.099%KF600647.1Select seq gb|KF600632.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_19_2013, complete genome11121112100%0.099%KF600632.1Select seq gb|KF600630.1|Middle East respiratory syndrome coronavirus isolate Buraidah_1_2013, complete genome11121112100%0.099%KF600630.1Select seq gb|JX869059.2|Human betacoronavirus 2c EMC/2012, complete genome11121112100%0.099%JX869059.2

LOCUS KT828666 605 bp RNA linear VRL 21-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Abudhabi-3 ORF1a (ORF1a) gene, partial cds. ACCESSION KT828666 VERSION KT828666.1 GI:939129421 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 605) AUTHORS Eltahir,Y.M. TITLE Clinical Presentation of Middle East Respiratory Syndrome Corona Virus (MERS-Co V) field outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates JOURNAL Unpublished REFERENCE 2 (bases 1 to 605) AUTHORS Eltahir,Y.M., Sayed,N.A. and AL Almuhairi,S.S. TITLE Direct Submission JOURNAL Submitted (26-SEP-2015) Abudhabi Food Control Authority, ABudhabi, Abudhabi, United Arab Emirates COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..605 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Abudhabi-3" /isolation_source="nasal swab" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="United Arab Emirates" /collection_date="Jun-2014" gene <1..>605 /gene="ORF1a" CDS <1..>605 /gene="ORF1a" /codon_start=1 /product="ORF1a" /protein_id="ALJ54522.1" /db_xref="GI:939129422" /translation="VFVTTLTSDYTITVFVTVNLAKVCTYAIFAYSPQLTLVFPEVKM ILLLYTCLGFMCTCYFGVFSLLNLKLRAPMGVYDFKVSTQEFRFMTANNLTAPRNSWE AMALNFKLIGIGGTPCIKVAAMQSKLTDLKCTSVVLLSVLQQLHLEANSRAWAFCVKC HNDILAATDPSEAFEKFVSLFATLMTFSGNVDLDALASDIF" ORIGIN 1 gtttttgtca ctacactcac tagtgattat acgattacag tctttgttac tgtcaacctt 61 gcaaaagttt gcacttatgc catctttgct tactcaccac agcttacact tgtgtttccg 121 gaagtgaaga tgatactttt attatacaca tgtttaggtt tcatgtgtac ttgctatttt 181 ggtgtcttct ctcttttgaa ccttaagctt agagcaccta tgggtgtcta tgactttaag 241 gtctcaacac aagagttcag attcatgact gctaacaatc taactgcacc tagaaattct 301 tgggaggcta tggctctgaa ctttaagtta ataggtattg gcggtacacc ttgtataaag 361 gttgctgcta tgcagtctaa acttacagat cttaaatgca catctgtggt tctcctctct 421 gtgctccaac agttacactt agaggctaat agtagggcct gggctttctg tgttaaatgc 481 cataatgata tattggcagc aacagacccc agtgaggctt tcgagaaatt cgtaagtctc 541 tttgccactt taatgacttt ttctggtaat gtagatcttg atgcgttagc tagtgatatt 601 tttga

June 2014 partial sequences from afield outbreak in a dromedary camel farm in Abu Dhabi Emirate, United Arab Emirates are identical to human sequences.

July 2015 – June 2016 Total birds sampled by flyway Last Updated: 11/06/2015 Total birds sampled: 20,648 Total HPAI positive cases: 1 Atlantic: 5,039 Mississippi: 7,196 Central: 3,572 Pacific: 4,819 American Oceania f : 22

APHIS November 6 update of wild bird testing for Fujian H5 describes testing of 20,648 wild birds. https://www.aphis.usda.gov/wildlife_damage/downloads/JULY 2015 - JUNE 2016 WILD BIRD POSITIVE HIGHLY PATHOGENIC AVIAN INFLUENZA CASES IN THE UNITED STATES.pdf