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Everything posted by niman
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Abbeville Rate (per 100k): 4,562.32 Cases--Confirmed positives: 1,119, Probable: 156 Deaths--Confirmed: 20, Probable: 5 Aiken Rate (per 100k): 4,593.5 Cases--Confirmed positives: 7,849, Probable: 1,307 Deaths--Confirmed: 115, Probable: 18 Allendale Rate (per 100k): 5,732.04 Cases--Confirmed positives: 498, Probable: 13 Deaths--Confirmed: 9, Probable: 0 Anderson Rate (per 100k): 5,650.73 Cases--Confirmed positives: 11,446, Probable: 608 Deaths--Confirmed: 260, Probable: 20 Bamberg Rate (per 100k): 6,618.8 Cases--Confirmed positives: 931, Probable: 26 Deaths--Confirmed: 40, Probable: 0 Barnwell Rate (per 100k): 6,369.21 Cases--Confirmed positives: 1,329, Probable: 126 Deaths--Confirmed: 25, Probable: 5 Beaufort Rate (per 100k): 4,809.44 Cases--Confirmed positives: 9,240, Probable: 346 Deaths--Confirmed: 102, Probable: 3 Berkeley Rate (per 100k): 3,692.3 Cases--Confirmed positives: 8,415, Probable: 738 Deaths--Confirmed: 103, Probable: 8 Calhoun Rate (per 100k): 5,284.13 Cases--Confirmed positives: 769, Probable: 38 Deaths--Confirmed: 17, Probable: 3 Charleston Rate (per 100k): 5,319.32 Cases--Confirmed positives: 21,884, Probable: 2,318 Deaths--Confirmed: 291, Probable: 30 Cherokee Rate (per 100k): 5,137.87 Cases--Confirmed positives: 2,944, Probable: 91 Deaths--Confirmed: 77, Probable: 2 Chester Rate (per 100k): 6,720.63 Cases--Confirmed positives: 2,167, Probable: 80 Deaths--Confirmed: 43, Probable: 2 Chesterfield Rate (per 100k): 4,197.15 Cases--Confirmed positives: 1,916, Probable: 420 Deaths--Confirmed: 58, Probable: 3 Clarendon Rate (per 100k): 5,076.31 Cases--Confirmed positives: 1,713, Probable: 117 Deaths--Confirmed: 71, Probable: 3 Colleton Rate (per 100k): 4,482.84 Cases--Confirmed positives: 1,689, Probable: 262 Deaths--Confirmed: 54, Probable: 1 Darlington Rate (per 100k): 5,596.09 Cases--Confirmed positives: 3,728, Probable: 818 Deaths--Confirmed: 86, Probable: 8 Dillon Rate (per 100k): 7,280.42 Cases--Confirmed positives: 2,219, Probable: 157 Deaths--Confirmed: 54, Probable: 5 Dorchester Rate (per 100k): 4,344.35 Cases--Confirmed positives: 7,073, Probable: 1,281 Deaths--Confirmed: 115, Probable: 13 Edgefield Rate (per 100k): 5,282.47 Cases--Confirmed positives: 1,440, Probable: 111 Deaths--Confirmed: 19, Probable: 7 Fairfield Rate (per 100k): 5,754.69 Cases--Confirmed positives: 1,286, Probable: 78 Deaths--Confirmed: 50, Probable: 3 Florence Rate (per 100k): 7,046.63 Cases--Confirmed positives: 9,745, Probable: 749 Deaths--Confirmed: 247, Probable: 12 Georgetown Rate (per 100k): 4,776.64 Cases--Confirmed positives: 2,994, Probable: 936 Deaths--Confirmed: 55, Probable: 24 Greenville Rate (per 100k): 6,974.99 Cases--Confirmed positives: 36,517, Probable: 810 Deaths--Confirmed: 472, Probable: 30 Greenwood Rate (per 100k): 5,732.16 Cases--Confirmed positives: 4,059, Probable: 189 Deaths--Confirmed: 85, Probable: 8 Hampton Rate (per 100k): 5,212.78 Cases--Confirmed positives: 1,002, Probable: 97 Deaths--Confirmed: 33, Probable: 3 Horry Rate (per 100k): 5,079.35 Cases--Confirmed positives: 17,985, Probable: 2,351 Deaths--Confirmed: 262, Probable: 55 Jasper Rate (per 100k): 4,369.37 Cases--Confirmed positives: 1,314, Probable: 33 Deaths--Confirmed: 24, Probable: 1 Kershaw Rate (per 100k): 5,295.19 Cases--Confirmed positives: 3,524, Probable: 387 Deaths--Confirmed: 65, Probable: 10 Lancaster Rate (per 100k): 4,956.54 Cases--Confirmed positives: 4,858, Probable: 376 Deaths--Confirmed: 79, Probable: 5 Laurens Rate (per 100k): 5,213.87 Cases--Confirmed positives: 3,519, Probable: 90 Deaths--Confirmed: 79, Probable: 2 Lee Rate (per 100k): 6,566.44 Cases--Confirmed positives: 1,105, Probable: 89 Deaths--Confirmed: 41, Probable: 1 Lexington Rate (per 100k): 5,024.6 Cases--Confirmed positives: 15,011, Probable: 1,723 Deaths--Confirmed: 257, Probable: 12 McCormick Rate (per 100k): 4,586.28 Cases--Confirmed positives: 434, Probable: 39 Deaths--Confirmed: 7, Probable: 2 Marion Rate (per 100k): 5,946.44 Cases--Confirmed positives: 1,823, Probable: 123 Deaths--Confirmed: 57, Probable: 6 Marlboro Rate (per 100k): 6,348.11 Cases--Confirmed positives: 1,658, Probable: 258 Deaths--Confirmed: 22, Probable: 5 Newberry Rate (per 100k): 6,475.03 Cases--Confirmed positives: 2,489, Probable: 333 Deaths--Confirmed: 64, Probable: 7 Oconee Rate (per 100k): 6,332.19 Cases--Confirmed positives: 5,037, Probable: 204 Deaths--Confirmed: 59, Probable: 3 Orangeburg Rate (per 100k): 5,713.95 Cases--Confirmed positives: 4,924, Probable: 181 Deaths--Confirmed: 146, Probable: 1 Pickens Rate (per 100k): 7,695.22 Cases--Confirmed positives: 9,764, Probable: 439 Deaths--Confirmed: 140, Probable: 13 Richland Rate (per 100k): 5,787.01 Cases--Confirmed positives: 24,060, Probable: 2,284 Deaths--Confirmed: 315, Probable: 20 Saluda Rate (per 100k): 4,606.07 Cases--Confirmed positives: 943, Probable: 58 Deaths--Confirmed: 24, Probable: 4 Spartanburg Rate (per 100k): 5,680.07 Cases--Confirmed positives: 18,164, Probable: 1,592 Deaths--Confirmed: 368, Probable: 24 Sumter Rate (per 100k): 4,979.34 Cases--Confirmed positives: 5,314, Probable: 205 Deaths--Confirmed: 113, Probable: 4 Union Rate (per 100k): 5,128.86 Cases--Confirmed positives: 1,401, Probable: 150 Deaths--Confirmed: 39, Probable: 2 Williamsburg Rate (per 100k): 6,404.77 Cases--Confirmed positives: 1,945, Probable: 268 Deaths--Confirmed: 48, Probable: 13 York Rate (per 100k): 5,046.64 Cases--Confirmed positives: 14,180, Probable: 1,028 Deaths--Confirmed: 175, Probable: 5 https://scdhec.gov/covid19/sc-testing-data-projections-covid-19#main
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France/HDF-IPP11311/2020 12/21 20 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=50.16026311788672%2C1.032196030762229&z=7
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Institut Pasteur, Paris has released (at GISAID) a UK Variant COVID sequence, France/HDF-IPP11311/2020, from a Dec 21 collection in Amiens.
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Cumulative Cases and Deaths by County Totals of all reported COVID-19 cases for 2020, including those in long-term care (LTC) facilities. The numbers in this table are provisional. County case numbers and deaths may change as investigation finds new or additional information. The data provided below is the most current available. County Total Cases Total Deaths Total LTC Facility Cases Total LTC Facility Deaths Adams 1801 58 72 15 Alcorn 2210 40 120 18 Amite 859 23 54 7 Attala 1728 51 166 32 Benton 675 21 45 10 Bolivar 3418 95 223 30 Calhoun 1175 17 25 4 Carroll 932 18 46 9 Chickasaw 1594 37 51 15 Choctaw 518 10 1 0 Claiborne 708 20 43 9 Clarke 1202 58 108 28 Clay 1329 30 20 3 Coahoma 1955 52 127 11 Copiah 2182 45 73 9 Covington 1843 67 133 39 De Soto 14714 139 107 20 Forrest 5232 101 215 44 Franklin 586 9 40 1 George 1732 35 48 7 Greene 988 25 52 6 Grenada 1962 62 146 31 Hancock 2033 55 70 14 Harrison 10680 157 470 57 Hinds 13966 265 690 101 Holmes 1592 65 103 20 Humphreys 726 22 33 8 Issaquena 152 4 0 0 Itawamba 2279 51 123 22 Jackson 8771 158 215 26 Jasper 1435 25 35 1 Jefferson 466 14 22 3 Jefferson Davis 762 24 8 1 Jones 5236 97 206 39 Kemper 655 19 44 9 Lafayette 4250 83 185 49 Lamar 4106 60 47 13 Lauderdale 4941 171 378 88 Lawrence 918 16 27 2 Leake 2049 51 81 9 Lee 7668 118 206 40 Leflore 2649 101 221 48 Lincoln 2551 79 169 36 Lowndes 4394 92 198 41 Madison 7194 136 330 60 Marion 1757 63 155 22 Marshall 2915 63 62 15 Monroe 3007 89 179 53 Montgomery 984 31 54 9 Neshoba 3006 141 191 55 Newton 1615 33 83 11 Noxubee 932 20 31 4 Oktibbeha 3409 74 205 34 Panola 3202 70 103 13 Pearl River 2581 81 155 31 Perry 878 30 20 7 Pike 2210 71 108 32 Pontotoc 3171 42 21 3 Prentiss 2101 42 99 15 Quitman 600 7 0 0 Rankin 8793 165 329 48 Scott 2131 40 37 4 Sharkey 387 17 43 8 Simpson 2042 63 152 19 Smith 1021 20 55 8 Stone 1173 18 78 9 Sunflower 2408 61 90 15 Tallahatchie 1228 32 43 7 Tate 2391 56 80 19 Tippah 1993 40 80 5 Tishomingo 1583 53 101 27 Tunica 758 19 15 2 Union 2809 42 105 16 Walthall 1002 34 67 13 Warren 2743 78 164 37 Washington 4259 116 187 39 Wayne 1671 27 68 11 Webster 760 18 57 11 Wilkinson 532 23 24 5 Winston 1834 50 105 28 Yalobusha 995 32 81 22 Yazoo 2114 50 138 17 Total 215,811 4,787 9,341 1,709 Case Classifications Mississippi investigates and reports both probable and confirmed cases and deaths according to the CSTE case definition. Confirmed Probable Total Cases 147,965 67,846 215,811 Deaths 3,825 962 4,787 Confirmed cases and deaths are generally determined by positive PCR tests, which detect the presence of ongoing coronavirus infection. Probable cases are those who test positive by other testing methods such as antibody or antigen, and have recent symptoms consistent with COVID-19, indicating a recent infection. Probable deaths are those individuals with a designation of COVID-19 as a cause of death on the death certificate, but where no confirmatory testing was performed. https://msdh.ms.gov/msdhsite/_static/14,0,420.html#highcase
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The Ohio Department of Health will not report numbers on Jan. 1 in observance of the holiday. Daily number reporting will resume on Jan. 2 and will reflect totals from Jan. 1 and Jan. 2. 628,336 Confirmed Cases 72,044 CDC Expanded Case Definition (Probable) 700,380 Total Cases 38,334 Number of Hospitalizations in Ohio 8,112 Confirmed Deaths 850 CDC Expanded Death Definition (Probable) 8,962 Total Deaths 5,870 Number of ICU Admissions <1-111 Age Range 43 Median Age 46%* Sex - Males 53%* Sex - Females LAST UPDATED 12/31/2020 (UPDATED DAILY AT 2 P.M.) *1% SEX NOT REPORTED https://coronavirus.ohio.gov/wps/portal/gov/covid-19/home
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Two UK Variant COVID Sequences In San Paulo Brazil
niman replied to niman's topic in Sequences (COVID)
DECEMBER 31, 20201:13 PMUPDATED AN HOUR AGO Brazil detects two cases of new coronavirus variant found in UK By Reuters Staff A Brazilian lab said on Thursday it has detected two cases of the new coronavirus variant that has spread rapidly in Britain, and urged reinforcement of quarantine measures for travelers coming from Europe. Diagnostic medicine company Dasa said in a statement that it had detected the SARS-CoV-2 strain B.1.1.7 through genetic sequencing done in partnership with Sao Paulo University’s Tropical Medicine Institute. “Sequencing confirmed that the new strain of the virus has arrived in Brazil,” said researcher Ester Sabino at the Tropical Medicine Institute. The new variant has rapidly become the dominant strain in cases of COVID-19 in parts of southern England, and has been linked to an increase in hospitalization rates. Australia, Italy and the Netherlands say they detected cases of the new strain. https://in.reuters.com/article/us-health-coronavirus-brazil-variant/brazil-detects-two-cases-of-new-coronavirus-variant-found-in-uk-idINKBN2951LL -
New Cases* 4,051 New Deaths* 40 New Tests* 32,607 Total Cases 315,275 Total Deaths 7,488 Total Tests 4,400,149 285,477 Confirmed 29,798 Probable 7,115 Confirmed 373 Probable 4,184,384 Molecular 215,765 Antigen COVID Patients 1,731 in Hospitals* COVID Patients 202 on Ventilators* Presumed Recovered 263,712 as of December 28th* https://ldh.la.gov/coronavirus/
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Total Cases 963,389 Confirmed Deaths 16,490 Probable Deaths 1,488 Total Tests Performed* 13,277,443 Recovery Rate** 98% *Total molecular and antigen tests performed and reported electronically for testing of COVID-19 at IDPH, commercial or hospital laboratories. All numbers displayed are provisional and will change. ** Recovered cases are defined as persons with initial positive specimen collection date > 42 days who have not expired. Recovery rate is calculated as the recovered cases divided by the sum of recovered cases and deceased cases. Information regarding the number of persons under investigation updated on 12/31/2020. Information to be updated daily. http://www.dph.illinois.gov/covid19#tab-0-0
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Hudson County 677 New Positives 1,531 Confirmed Deaths 43936 Positive Test Results 168 Probable Deaths Bergen County 535 New Positives 2,055 Confirmed Deaths 47099 Positive Test Results 263 Probable Deaths Monmouth County 448 New Positives 937 Confirmed Deaths 31834 Positive Test Results 103 Probable Deaths Middlesex County 447 New Positives 1,458 Confirmed Deaths 44793 Positive Test Results 219 Probable Deaths Essex County 430 New Positives 2,141 Confirmed Deaths 47192 Positive Test Results 250 Probable Deaths Ocean County 395 New Positives 1,274 Confirmed Deaths 32427 Positive Test Results 82 Probable Deaths Camden County 333 New Positives 753 Confirmed Deaths 28628 Positive Test Results 65 Probable Deaths Passaic County 276 New Positives 1,301 Confirmed Deaths 39876 Positive Test Results 157 Probable Deaths Union County 223 New Positives 1,375 Confirmed Deaths 36502 Positive Test Results 181 Probable Deaths Burlington County 205 New Positives 573 Confirmed Deaths 21170 Positive Test Results 51 Probable Deaths Mercer County 167 New Positives 680 Confirmed Deaths 18750 Positive Test Results 40 Probable Deaths Gloucester County 150 New Positives 369 Confirmed Deaths 14116 Positive Test Results 17 Probable Deaths Morris County 148 New Positives 780 Confirmed Deaths 20106 Positive Test Results 178 Probable Deaths Atlantic County 139 New Positives 351 Confirmed Deaths 12183 Positive Test Results 17 Probable Deaths Cumberland County 124 New Positives 215 Confirmed Deaths 7843 Positive Test Results 10 Probable Deaths Somerset County 93 New Positives 576 Confirmed Deaths 12600 Positive Test Results 88 Probable Deaths Salem County 81 New Positives 105 Confirmed Deaths 2757 Positive Test Results 7 Probable Deaths Hunterdon County 54 New Positives 85 Confirmed Deaths 3746 Positive Test Results 54 Probable Deaths Sussex County 51 New Positives 172 Confirmed Deaths 4435 Positive Test Results 43 Probable Deaths Warren County 46 New Positives 170 Confirmed Deaths 3922 Positive Test Results 13 Probable Deaths Cape May County 29 New Positives 120 Confirmed Deaths 2388 Positive Test Results 15 Probable Deaths https://www.nj.gov/health/cd/topics/covid2019_dashboard.shtml
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UK Variant COVID Sequence Sans Spike Y145del In Nordjylland Denmark
niman replied to niman's topic in Sequences (COVID)
Denmark/DCGC-17723/2020 12/14 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=56.65125833398374%2C8.662723504338192&z=8 -
New Tests Administered 54,672 04/17/2020 ... 12/30/2020 14,272 New Individuals Tested New Positive Cases 6,543 12/23/2020 ... 12/30/2020 Positivity - All Tests 14.1 %7-Day Rate 12/18/2020 ... 12/24/2020 10.6 % cumulative rate New Deaths 99 12/11/2020 ... 12/30/2020 Total Confirmed COVID-19 Counts Total Tests Administered 5,681,710 02/26/2020 ... 12/30/2020 2,636,695 Individuals Tested Total Positive Cases 511,485 03/06/2020 ... 12/30/2020 Positivity - Unique Individuals 23.7 %7-Day Rate 12/18/2020 ... 12/24/2020 19.4 % cumulative rate Total Deaths 7,911 03/15/2020 ... 12/30/2020 https://www.coronavirus.in.gov/
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Number of confirmed cases : 276,662 Number of persons tested negative : 2,525,806 Total testing volume : 5,708,030 Daily testing Volume : 35,860 Total vaccinated : 47,012 Number of confirmed deaths : 5,727 Number of probable deaths : 168 Currently hospitalized : 1,773 Acute care : 1,374 Intensive care : 399 Ever hospitalized : 26,636 Released from isolation : 9,355 Cases and Deaths Data Breakdown: Parenthesis = Confirmed death, laboratory-confirmed positive COVID-19 test result Asterisk = Probable death, death certificate lists COVID-19 as the cause of death but not yet confirmed by a laboratory test NH = Non-Hispanic By County County Cases Deaths Allegany 5,404 (153) 0* Anne Arundel 24,408 (352) 13* Baltimore City 31,537 (683) 21* Baltimore County 38,657 (904) 29* Calvert 2,231 (44) 1* Caroline 1,319 (10) 0* Carroll 5,168 (161) 4* Cecil 3,568 (72) 2* Charles 6,036 (123) 1* Dorchester 1,372 (22) 0* Frederick 11,301 (186) 8* Garrett 1,456 (49) 1* Harford 8,551 (160) 4* Howard 11,222 (174) 6* Kent 737 (25) 2* Montgomery 46,200 (1,081) 43* Prince George's 54,581 (1,058) 27* Queen Anne's 1,664 (27) 1* Somerset 1,792 (22) 0* St. Mary's 3,255 (87) 0* Talbot 1,164 (8) 0* Washington 8,206 (147) 2* Wicomico 4,675 (77) 0* Worcester 2,158 (47) 1* Data not available 0 (55) 2* By Age Range and Gender Age/Gender Cases Deaths 0-9 12,541 (1) 0* 10-19 25,021 (4) 1* 20-29 51,169 (27) 1* 30-39 48,615 (61) 6* 40-49 42,905 (172) 4* 50-59 41,557 (447) 20* 60-69 27,801 (882) 17* 70-79 16,004 (1,450) 30* 80+ 11,049 (2,681) 89* Data not available 0 (2) 0* Female 145,179 (2,777) 82* Male 131,483 (2,950) 86* By Race and Ethnicity Race/Ethnicity Cases Deaths African-American (NH) 80,223 (2,108) 60* Asian (NH) 5,794 (187) 7* White (NH) 89,801 (2,753) 85* Hispanic 47,989 (563) 14* Other (NH) 12,735 (58) 0* Data not available 40,120 (58) 2* https://coronavirus.maryland.gov/
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https://www.azdhs.gov/preparedness/epidemiology-disease-control/infectious-disease-epidemiology/covid-19/dashboards/index.php
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CASES 361,226 TOTAL 290,581 CONFIRMED 70,645 PROBABLE LAST 14 DAYS 51,938 CASES 124,987 TESTED (DIAGNOSTIC) *TOTAL HOSPITALIZATIONS To Date Updates M-F at 3 p.m. 33,831 STATEWIDE DEATHS 4,827 TOTAL 4,219 CONFIRMED 608 PROBABLE TOTAL TESTED 1,874,000 DIAGNOSTIC 87,409 ANTIBODY PRESUMED RECOVERIES Updated Weekly 202,137 STATEWIDE https://alpublichealth.maps.arcgis.com/apps/opsdashboard/index.html#/6d2771faa9da4a2786a509d82c8cf0f7
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https://coronavirus.iowa.gov/#CurrentStatus
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Two UK Variant COVID Sequences In San Paulo Brazil
niman replied to niman's topic in Sequences (COVID)
Brazil/SP-L67-CD1713/2020 12/21 34M matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=-23.526058698893912%2C-49.32148665163512&z=6 -
Two UK Variant COVID Sequences In San Paulo Brazil
niman replied to niman's topic in Sequences (COVID)
Brazil/SP-L67-CD1713/2020 12/22 24F matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. map update https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=-23.526058698893912%2C-49.32148665163512&z=6