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Everything posted by niman
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Israel Ministry of Health has released UK variant sequence, Israel/CVL-7075/2020, (at GISAID collected Dec 16)
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First UK COVID Variant Sequence Reported in Lazio Italy
niman replied to niman's topic in Sequences (COVID)
Italy/LAZ-AMC3-5015/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. see map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=41.80436477277401%2C12.738513296915768&z=9 -
Army Medical Center released first UK variant sequence from Lazio, Italy, Italy/LAZ-AMC3-5015/2020 (at GISAID) collected Dec 14.
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Second UK COVID Variant Reported in Noord-Holland Netherlands
niman replied to niman's topic in Sequences (COVID)
Netherlands/NH-RIVM-20432/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. see map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=52.144409627427585%2C4.77566149610356&z=9 -
Hong Kong/CM20000461/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8 see map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=22.079709530794716%2C113.93138986841389&z=9
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Hong Kong Department of Health released a second UK variant sequence (at GISAID), Hong Kong/CM20000461/2020, from Dec 13 collection from 17M.
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First UK COVID Variant Sequence Reported in Gibraltar
niman replied to niman's topic in Sequences (COVID)
Gibraltar/205000662/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. see map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=36.14341277591586%2C-5.359459500000005&z=15 -
PHE Covid Sequencing Team released sequence (at GISAID) of first UK COVID variant from Gibraltar, Gibraltar/205000662/2020 (Dec collection).
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First Reported South Africa COVID Variant Sequence In England
niman replied to niman's topic in Sequences (COVID)
England/ALDP-C497BF/2020 had the consensus changes for the South Africa variant including 3 RBD mutations and 3 AA deletion in the Spike protein, as well as 3 AAs in NSP6. See map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=53.277992670448604%2C-2.2324655499999846&z=13 -
Australia/NSW3647/2020 matched UK variant with 3 AAs deleted in Spike protein, 3 AAs deleted in NSP6 and Q27 stop codon in NS8. see map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=-33.915988268833104%2C151.16165772158203&z=11
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New South Wales Health Pathology Randwick released 2nd UK COVID variant sequence, Australia/NSW3647/2020, (at GISAID) from 6M from Sydney, Australia.
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UK COVID Variant in Singapore Missing NSB 6 Deletion
niman replied to niman's topic in Sequences (COVID)
see map https://www.google.com/maps/d/u/1/edit?mid=1aQDSL2LwQFbuoCAg_nIOPK8D-LIJ5MYd&ll=1.3139846939992808%2C103.84425005440227&z=11 -
Total Cases 43,629 Cases have not been updated for today. Please check back later. Hospitalizations 964 Total count (does not reflect current stays) Deaths 198 https://coronavirus-response-alaska-dhss.hub.arcgis.com/
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https://montana.maps.arcgis.com/apps/MapSeries/index.html?appid=7c34f3412536439491adcc2103421d4b
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https://health.hawaii.gov/coronavirusdisease2019/
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New Hampshire 2019 Novel Coronavirus (COVID-19) Summary Report (data updated as of December 24, 2020 - 9:00 AM) https://www.nh.gov/covid19/ Number of Persons with COVID-19 1 38,902 Recovered 32,324 (82%) Deaths Attributed to COVID-19 690 (2%) Total Current COVID-19 Cases 5,888 Persons Who Have Been Hospitalized for COVID-19 894 (2%) Current Hospitalizations 298 Total Persons Tested at Selected Laboratories, Polymerase Chain Reaction (PCR)2 495,020 Total Persons Tested at Selected Laboratories, Antibody Laboratory Tests2 34,465 Persons with Specimens Submitted to NH PHL 62,327 Persons with Test Pending at NH PHL3 941 1 Includes specimens positive at any laboratory and those confirmed by CDC confirmatory testing.2 Includes specimens tested at the NH Public Health Laboratories (PHL), LabCorp, Quest, Dartmouth-Hitchcock Medical Center, Mako, certain hospital laboratories, the University of New Hampshire and their contracted laboratory, and those sent to CDC prior to NH PHL testing capacity.3 Includes specimens received and awaiting testing at NH PHL. Does not include tests pending at commercial laboratories. Active Cases Data Active Cases Map December 24, 2020 Cumulative Cases Data Cumulative Cases Map December 24, 2020
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5,417 Douglas 2,097 Lancaster 1,699 Sarpy 429 Hall 349 Dodge 293 Lincoln 265 Buffalo 235 Madison 201 Cass 178 Saunders 170 Adams 169 Dawson 158 Gage 152 Washington 149 Platte 145 Dakota 142 Scotts Bluff 138 Seward 130 Red Willow 115 Johnson 109 Knox 106 Cuming 102 Otoe 95 Saline 94 Cheyenne 91 Cedar 75 York 74 Thurston 74 Keith 73 Holt 72 Kimball 72 Phelps 68 Jefferson 67 Hamilton 62 Wayne 59 Thayer 59 Custer 55 Sheridan 52 Pierce 51 Dixon 51 Clay 51 Box Butte 51 Nemaha 50 Antelope 48 Colfax 48 Howard 47 Richardson 45 Merrick 40 Dawes 38 Chase 35 Kearney 34 Butler 33 Hitchcock 31 Boone 29 Nuckolls 28 Cherry 28 Fillmore 28 Stanton 26 Furnas 26 Gosper 22 Perkins 22 Valley 21 Greeley 20 Franklin 20 Brown 19 Burt 19 Morrill 16 Nance 16 Pawnee 16 Boyd 14 Garfield 14 Harlan 12 Frontier 12 Deuel 12 Webster 10 Rock 10 Polk 10 Logan 9 Dundy 9 Wheeler 8 Keya Paha 7 Banner 6 Sherman 5 Hayes 4 McPherson 4 Garden 3 Sioux 2 Thomas 2 Blaine 2 Loup 2 Grant 1 Arthur https://experience.arcgis.com/experience/ece0db09da4d4ca68252c3967aa1e9dd 0 Hooker
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https://coronavirus.idaho.gov/
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Arkansas (1,231 Total Positive Cases) Ashley (1,214 Total Positive Cases) Baxter (1,916 Total Positive Cases) Benton (16,578 Total Positive Cases) Boone (2,435 Total Positive Cases) Bradley (870 Total Positive Cases) Calhoun (213 Total Positive Cases) Carroll (1,977 Total Positive Cases) Chicot (1,379 Total Positive Cases) Clark (1,267 Total Positive Cases) Clay (1,255 Total Positive Cases) Cleburne (1,102 Total Positive Cases) Cleveland (528 Total Positive Cases) Columbia (1,481 Total Positive Cases) Conway (1,169 Total Positive Cases) Craighead (9,518 Total Positive Cases) Crawford (4,171 Total Positive Cases) Crittenden (4,104 Total Positive Cases) Cross (1,284 Total Positive Cases) Dallas (457 Total Positive Cases) Desha (894 Total Positive Cases) Drew (1,386 Total Positive Cases) Faulkner (6,964 Total Positive Cases) Franklin (1,029 Total Positive Cases) Fulton (810 Total Positive Cases) Garland (5,297 Total Positive Cases) Grant (949 Total Positive Cases) Greene (4,235 Total Positive Cases) Hempstead (1,166 Total Positive Cases) Hot Spring (3,454 Total Positive Cases) Howard (1,062 Total Positive Cases) Independence (2,608 Total Positive Cases) Izard (1,198 Total Positive Cases) Jackson (2,744 Total Positive Cases) Jefferson (6,466 Total Positive Cases) Johnson (1,700 Total Positive Cases) Lafayette (321 Total Positive Cases) Lawrence (1,472 Total Positive Cases) Lee (1,394 Total Positive Cases) Lincoln (2,765 Total Positive Cases) Little River (766 Total Positive Cases) Logan (1,321 Total Positive Cases) Lonoke (3,836 Total Positive Cases) Madison (958 Total Positive Cases) Marion (584 Total Positive Cases) Miller (2,610 Total Positive Cases) Missing County Info (2,731 Total Positive Cases) Mississippi (4,190 Total Positive Cases) Monroe (435 Total Positive Cases) Montgomery (463 Total Positive Cases) Nevada (582 Total Positive Cases) Newton (539 Total Positive Cases) Ouachita (1,259 Total Positive Cases) Perry (390 Total Positive Cases) Phillips (1,223 Total Positive Cases) Pike (637 Total Positive Cases) Poinsett (2,270 Total Positive Cases) Polk (1,162 Total Positive Cases) Pope (5,060 Total Positive Cases) Prairie (512 Total Positive Cases) Pulaski (22,768 Total Positive Cases) Randolph (1,351 Total Positive Cases) Saline (7,070 Total Positive Cases) Scott (514 Total Positive Cases) Searcy (468 Total Positive Cases) Sebastian (8,936 Total Positive Cases) Sevier (2,007 Total Positive Cases) Sharp (1,039 Total Positive Cases) St. Francis (2,634 Total Positive Cases) Stone (734 Total Positive Cases) Union (2,196 Total Positive Cases) Van Buren (712 Total Positive Cases) Washington (20,274 Total Positive Cases) White (4,286 Total Positive Cases) Woodruff (318 Total Positive Cases) Yell (2,247 Total Positive Cases) https://experience.arcgis.com/experience/c2ef4a4fcbe5458fbf2e48a21e4fece9
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Updated 12/24/2020 with data from 12:01 am (updated Monday - Friday)* Total cases 106,821 Total deaths 1,415 Positive tests 148,469 Negative tests 2,389,013 Total tests 2,537,482 https://govstatus.egov.com/OR-OHA-COVID-19