Everything posted by niman
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First BA.2.86 Sequence from Norway
Norway/Ahus-5022/2023 Viken Akershus University Hospital 9/17/23 collection Spike ins16MPLF, V483del
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Second BA.2.86 Sequence from Niigata Japan
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=37.84450908123936%2C138.92122941223045&z=13
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Second BA.2.86 Sequence from Niigata Japan
Japan/PG-571457/2023 Niigata 9/11/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Eleventh BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=55.72543509953018%2C12.45029394679705&z=14
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Eleventh BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
Denmark/DCGC-659826/2023 Herlev and Gentofte University Hospital 9/18/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Tenth BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=55.72450368992625%2C12.457160401875175&z=14
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Tenth BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
Denmark/DCGC-659821/2023 Herlev and Gentofte University Hospital 9/18/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Nineth BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=55.73223689161999%2C12.455615449482597&z=14
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Nineth BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
Denmark/DCGC-659842/2023 Herlev and Gentofte University Hospital 9/11/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Eighth BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=55.73102870101353%2C12.453984666401542&z=14
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Eighth BA.2.86 Sequence from Herlev and Gentofte University Hospital Denmark
Denmark/DCGC-659819/2023 Herlev and Gentofte University Hospital 9/11/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C
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First BA.2.86 Sequence from Hawaii USA
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=21.42003251495882%2C-157.9596980961548&z=13
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First BA.2.86 Sequence from Hawaii USA
USA/HI-H2324970/2023 Honolulu County 9/6/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Fifteenth BA.2.86 Sequence from New York USA
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.04225495636935%2C-73.88844165390624&z=12
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Fifteenth BA.2.86 Sequence from New York USA
NY-CDC-QDX85345104/2023 New York 9/19/23 Collection 24F Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Fifteenth BA.2.86 Sequence from New York USA
isolate SARS-CoV-2/Human/USA/NY-CDC-QDX85345104/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-19 isolation source Nasal Swabs geographic location USA: New York host Homo sapiens host disease COVID-19 host sex female host age 24 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-02 Accession: SAMN37639303 ID: 37639303 https://www.ncbi.nlm.nih.gov/biosample/SAMN37639303
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Second BA.2.86 Sequence from Valais Hospital Sion Switzerland
https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.23664023424686%2C7.330900568359384&z=12
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Second BA.2.86 Sequence from Valais Hospital Sion Switzerland
Switzerland/VS-ICH-22309-14050/2023 Sion Valais Hospital 9/8/23 Spike V483del NSP3 K1155R BA.2.86.1
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First BA.2.86 Sequence from Valais Hospital Sion Switzerland
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=46.25139957097964%2C7.320600885742197&z=11
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First BA.2.86 Sequence from Valais Hospital Sion Switzerland
Switzerland/VS-ICH-22309-04735/2023 Sion Valais Hospital 9/4/23 collection Spike V483del NSP3 K1155R BA.2.86.1
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Third BA.2.286 Sequence from Pennsylvania USA
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.77489182896704%2C-75.71193014687499&z=9
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Third BA.2.286 Sequence from Pennsylvania USA
USA/PA-CDC-QDX85345079/2023 Pennsylvania 9/19/23 collection 70M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 K1689R
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Third BA.2.286 Sequence from Pennsylvania USA
map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.7723368219761%2C-75.55012378320312&z=11
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Third BA.2.286 Sequence from Pennsylvania USA
USA/PA-CDC-QDX85345079/2023 Pennsylvania 9/19/23 collection 70M Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1
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Third BA.2.286 Sequence from Pennsylvania USA
isolate SARS-CoV-2/Human/USA/PA-CDC-QDX85345079/2023 collected by Quest Diagnostics Incorporated collection date 2023-09-19 isolation source Nasal Swabs geographic location USA: Pennsylvania host Homo sapiens host disease COVID-19 host sex male host age 70 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-10-02 Accession: SAMN37639207 ID: 37639207 https://www.ncbi.nlm.nih.gov/biosample/SAMN37639207