niman

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=59.18640740441193%2C17.857536220199&z=11

Sweden/AB-01_SE100_23CS101780/2023 Huddinge Karolinska University Hospital 9/19/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=59.35635336390949%2C18.00205314852321&z=14

Sweden/AB-01_SE100_23CS502443/2023 Solna Karolinska University Hospital 9/20/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.33117200554406%2C2.052456490618879&z=11

Spain/CT-HUB-08690/2023 Catalunya Hospital Universitari de Bellvitge 9/5/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.96468071916506%2C-73.9863571481764&z=10

USA/NY-CDC-QDX85192853/2023 New York 9/14/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C NSP14 S221A NSP14 N408K NSP15 V69M T26229C (ORF 3a) T27134C (M)

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.74771290519172%2C-76.37272512571955&z=8

USA/PA-CDC-QDX85345079/2023 Pennsylvania 9/19/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.06082810104104%2C-73.92277395384455&z=11

NY-CDC-QDX85345104/2023 New York 9/19/23 Collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=40.9869969163727%2C-73.91728078978205&z=10

USA/NY-CDC-QDX85192853/2023 New York 9/14/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=41.20510675312596%2C-75.66401861284179&z=13

PA-CDC-LC1057572/2023 Pennsylvania Collected 9/2/23 75F Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 T1269I

isolate SARS-CoV-2/Human/USA/PA-CDC-LC1057572/2023 collected by Laboratory Corporation of America collection date 2023-09-02 isolation source Nasal Swabs geographic location USA: Pennsylvania host Homo sapiens host disease COVID-19 host sex female host age 75 collection device Nasal Swabs collection method Nasal Swabs purpose of sequencing baseline surveillance (random sampling) host_race Unknown diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.199 lineage/clade name BA.2.86 Submission CDC-OAMD; 2023-09-19 Accession: SAMN37447578 ID: 37447578 https://www.ncbi.nlm.nih.gov/biosample/SAMN37447578

collection date 2023-09-08 geographic location United Kingdom host common name not provided host health state not provided host Homo sapiens host sex not provided host subject id not provided isolate not provided sample capture status active surveillance in response to outbreak sample name COG-UK/CLIMB-CM7Y8RUT ENA-CHECKLIST ERC000033 INSDC center name Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Submitter Id COG-UK/CLIMB-CM7Y8RUT broker name COVID-19 Genomics UK Consortium collecting institution Respiratory Virus Unit, Microbiology Services Colindale, Public Health England collector name not provided definition for seropositive sample not provided geographic location (region and locality) England receipt date 2023-09-15 scientific_name Severe acute respiratory syndrome coronavirus 2 serotype (required for a seropositive sample) not provided virus identifier not provided Submission EBI; 2023-09-27 Accession: SAMEA114427858 ID: 37557662 https://www.ncbi.nlm.nih.gov/biosample/SAMEA114427858

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=31.952630633047352%2C34.803288652156716&z=13

Israel/SMC-7115417/2023 Be'er Ya'akov Shamir Medical Center 9/26/23 collection Spike ins16MPLF, V483del NSP3 K1155R BA.2.86.1 NSP3 T1269I

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=31.964038391119196%2C34.83247108623875&z=13

Israel/SMC-7115359/2023 Be'er Ya'akov Shamir Medical Center 9/24/23 collection Spike ins16MPLF

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=51.50604996022841%2C-3.2094471583496076&z=13

Wales/CLIMB-CM7YGFGK/2023 Wales 9/19/23 Spike ins16XXXX, V483del NSP3 K1155R BA.2.86.1 NSP2 Y441C

map update https://www.google.com/maps/d/u/1/edit?mid=1OCfYIWOx61CCNsWu-FDaiTeSYn066gY&ll=51.42873367435243%2C-0.2783124149413996&z=13