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niman

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  1. niman
    Align Segment-ID Name Score E-Value Identity EPI909459 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI909451 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI868847 A/turkey/England/052131/2016 (A/H5N8) segment 3 (PA) 3962.2 0.000000e+00 2149/2151 (99%) EPI909427 A/turkey/Rostov/11/2017 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI860400 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI860235 A/wild duck/Poland/82A/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI863848 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 3 (PA) 3936.3 0.000000e+00 2144/2151 (99%) EPI881285 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI869686 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI863864 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI860392 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI859658 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI863833 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 3 (PA) 3932.6 0.000000e+00 2143/2151 (99%) EPI863825 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 3 (PA) 3932.6 0.000000e+00 2143/2151 (99%) EPI909443 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI861185 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 3 (PA) 3928.9 0.000000e+00 2143/2151 (99%) EPI863856 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 3 (PA) 3925.3 0.000000e+00 2141/2151 (99%) EPI909363 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 3 (PA) 3919.7 0.000000e+00 2141/2151 (99%) EPI909435 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI909419 A/chicken/Voronezh/20/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI909411 A/chicken/Voronezh/19/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI909403 A/chicken/Voronezh/18/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI909395 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI909387 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI909379 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI888087 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 3 (PA) 3917.9 0.000000e+00 2141/2151 (99%) EPI614265 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%) EPI446529 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 3 (PA) 3679.6 0.000000e+00 2099/2152 (97%) EPI596393 A/muscovy duck/Vietnam/LBM201/2012 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI441050 A/muscovy duck/Vietnam/LBM198/2012 (A/H6N2) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI418270 A/muscovy duck/Vietnam/LBM189/2012 (A/H3N2) segment 3 (PA) 3657.5 0.000000e+00 2095/2152 (97%) EPI538458 A/common teal/Mongolia/1920/2011 (A/H4N6) segment 3 (PA) 3655.6 0.000000e+00 2078/2127 (97%) EPI692479 A/duck/Hubei/S2114/2012 (A/H4N8) segment 3 (PA) 3640.9 0.000000e+00 2094/2154 (97%) EPI598436 A/duck/Jiangxi/6535/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598434 A/duck/Jiangxi/6648/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598433 A/duck/Jiangxi/6645/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598431 A/duck/Jiangxi/6624/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598430 A/duck/Jiangxi/6602/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598428 A/duck/Jiangxi/6568/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598425 A/duck/Jiangxi/6544/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598424 A/duck/Jiangxi/6526/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598423 A/duck/Jiangxi/6515/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598364 A/duck/Jiangxi/6496/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598362 A/duck/Jiangxi/6474/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598361 A/duck/Jiangxi/6460/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598358 A/duck/Jiangxi/6450/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598432 A/duck/Jiangxi/6634/2013 (A/H10N8) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI598429 A/duck/Jiangxi/6584/2013 (A/H10N8) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI598427 A/duck/Jiangxi/6556/2013 (A/H10N8) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI598426 A/duck/Jiangxi/6547/2013 (A/H10N8) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI598422 A/duck/Jiangxi/6505/2013 (A/H10N8) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI598363 A/duck/Jiangxi/6487/2013 (A/H10N8) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI596484 A/duck/Vietnam/LBM553/2013 (A/H3N8) segment 3 (PA) 3629.8 0.000000e+00 2091/2153 (97%) EPI336009 A/teal/Chany/444/2009 (A/H8N8) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%) EPI704339 A/duck/Mongolia/179/2015 (A/H3N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI704322 A/duck/Mongolia/173/2015 (A/H3N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI577205 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI476086 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI476085 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI475922 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI534727 A/duck/Zhejiang/4637/2013 (A/H3N2) segment 3 (PA) 3618.7 0.000000e+00 2068/2122 (97%) EPI476088 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI476087 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI476065 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI475923 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI475921 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI534730 A/duck/Zhejiang/4625/2013 (A/H3N2) segment 3 (PA) 3616.9 0.000000e+00 2067/2121 (97%) EPI753580 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 3 (PA) 3613.2 0.000000e+00 2087/2152 (96%) EPI461625 A/duck/Hunan/S11893/2012 (A/H4N6) segment 3 (PA) 3613.2 0.000000e+00 2086/2151 (96%) EPI845253 A/environment/Sichuan/315068/2015 (A/H6N2) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI475919 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI845260 A/environment/Sichuan/315069/2015 (A/H6N2) segment 3 (PA) 3602.1 0.000000e+00 2085/2152 (96%) EPI841762 A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 3 (PA) 3602.1 0.000000e+00 2085/2152 (96%) EPI542399 A/muscovy duck/Vietnam/LBM687/2014 (A/H4N6) segment 3 (PA) 3602.1 0.000000e+00 2085/2152 (96%) EPI222086 A/garganey/Altai/1213/2007 (A/H5N2) segment 3 (PA) 3602.1 0.000000e+00 2084/2151 (96%) EPI222046 A/gadwall/Altai/1202/2007 (A/H5N2) segment 3 (PA) 3602.1 0.000000e+00 2084/2151 (96%) EPI889139 A/wild bird/Jiangxi/P419/2016 (A/H6N8) segment 3 (PA) 3596.5 0.000000e+00 2084/2152 (96%) EPI387543 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 3 (PA) 3596.5 0.000000e+00 2065/2124 (97%) EPI890476 A/mallard duck/Netherlands/10/2012 (A/H6N1) segment 3 (PA) 3591.0 0.000000e+00 2083/2152 (96%) EPI538449 A/ruddy shelduck/Mongolia/686C2/2008 (A/H2N3) segment 3 (PA) 3589.2 0.000000e+00 2065/2126 (97%) EPI591175 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 3 (PA) 3585.5 0.000000e+00 2082/2152 (96%) EPI591172 A/duck/Jiangxi/34894/2013 (A/H0) segment 3 (PA) 3585.5 0.000000e+00 2082/2152 (96%) EPI534726 A/duck/Zhejiang/4613/2013 (A/H3N2) segment 3 (PA) 3581.8 0.000000e+00 2049/2103 (97%) EPI889662 A/mallard duck/Netherlands/7/2012 (A/H1N1) segment 3 (PA) 3579.9 0.000000e+00 2081/2152 (96%) EPI591173 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 3 (PA) 3579.9 0.000000e+00 2082/2153 (96%) EPI890932 A/mallard duck/Netherlands/5/2013 (A/H1N1) segment 3 (PA) 3574.4 0.000000e+00 2080/2152 (96%) EPI704519 A/duck/Mongolia/518/2015 (A/H10N3) segment 3 (PA) 3568.8 0.000000e+00 2080/2153 (96%) EPI598773 A/duck/Jiangxi/6613/2013 (A/H0) segment 3 (PA) 3568.8 0.000000e+00 2073/2143 (96%) EPI614267 A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI823780 A/environment/Kamchatka/24/2016 (A/H13N8) segment 3 (PA) 3557.8 0.000000e+00 2076/2151 (96%) EPI704371 A/duck/Mongolia/211/2015 (A/H3N8) segment 3 (PA) 3557.8 0.000000e+00 2078/2153 (96%) EPI704363 A/duck/Mongolia/208/2015 (A/H3N8) segment 3 (PA) 3557.8 0.000000e+00 2078/2153 (96%) EPI704314 A/duck/Mongolia/167/2015 (A/H3N8) segment 3 (PA) 3557.8 0.000000e+00 2078/2153 (96%) EPI693705 A/duck/Mongolia/83/2015 (A/H3N8) segment 3 (PA) 3557.8 0.000000e+00 2078/2153 (96%) EPI614279 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 3 (PA) 3557.8 0.000000e+00 2076/2151 (96%) EPI704258 A/duck/Mongolia/30/2015 (A/H3N8) segment 3 (PA) 3552.2 0.000000e+00 2077/2153 (96%) EPI683216 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 3 (PA) 3552.2 0.000000e+00 2076/2152 (96%) EPI511081 A/mallard/Sweden/52405/2006 (A/H0) segment 3 (PA) 3546.7 0.000000e+00 2075/2152 (96%) EPI704437 A/duck/Mongolia/777/2015 (A/H3N8) segment 3 (PA) 3541.1 0.000000e+00 2075/2153 (96%) EPI401787 A/spot-billed duck/Xianghai/427/2011 (A/H5N2) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%)
  2. niman
    Align Segment-ID Name Score E-Value Identity EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4194.9 0.000000e+00 2273/2274 (99%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4183.8 0.000000e+00 2271/2274 (99%) EPI909466 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 2 (PB1) 4172.7 0.000000e+00 2269/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4169.0 0.000000e+00 2268/2274 (99%) EPI909442 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI909426 A/turkey/Rostov/11/2017 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI869807 A/duck/France/161108h/2016 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4165.3 0.000000e+00 2267/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4165.3 0.000000e+00 2267/2274 (99%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4163.5 0.000000e+00 2267/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2266/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4161.6 0.000000e+00 2267/2274 (99%) EPI909418 A/chicken/Voronezh/20/2017 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI909410 A/chicken/Voronezh/19/2017 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI909402 A/chicken/Voronezh/18/2017 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI909394 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI909386 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI909378 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2264/2271 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI909434 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2262/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI869943 A/herring gull/Poland/84/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2226/2229 (99%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4082.2 0.000000e+00 2252/2275 (98%) EPI888086 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 2 (PB1) 4047.1 0.000000e+00 2199/2203 (99%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI891216 A/mallard duck/Netherlands/30/2011 (A/H6N4) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%)
  3. niman
    Align Segment-ID Name Score E-Value Identity EPI909457 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 1 (PB2) 4239.2 0.000000e+00 2295/2295 (100%) EPI909449 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 1 (PB2) 4239.2 0.000000e+00 2295/2295 (100%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4196.7 0.000000e+00 2287/2295 (99%) EPI909433 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 1 (PB2) 4194.9 0.000000e+00 2287/2295 (99%) EPI909417 A/chicken/Voronezh/20/2017 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI909409 A/chicken/Voronezh/19/2017 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI909401 A/chicken/Voronezh/18/2017 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI909385 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI909377 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI860399 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI859660 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2282/2295 (99%) EPI909441 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2281/2295 (99%) EPI909425 A/turkey/Rostov/11/2017 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2281/2295 (99%) EPI909393 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2281/2295 (99%) EPI881279 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2275/2286 (99%) EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI860391 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2281/2295 (99%) EPI869942 A/herring gull/Poland/84/2016 (A/H5N8) segment 1 (PB2) 4152.4 0.000000e+00 2274/2287 (99%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4146.8 0.000000e+00 2268/2280 (99%) EPI860494 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 1 (PB2) 4132.1 0.000000e+00 2263/2276 (99%) EPI909361 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 1 (PB2) 4130.2 0.000000e+00 2265/2280 (99%) EPI888085 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI863862 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 1 (PB2) 4119.1 0.000000e+00 2263/2280 (99%) EPI704280 A/duck/Mongolia/118/2015 (A/H4N6) segment 1 (PB2) 3978.8 0.000000e+00 2248/2295 (97%) EPI704256 A/duck/Mongolia/30/2015 (A/H3N8) segment 1 (PB2) 3962.2 0.000000e+00 2245/2295 (97%) EPI704541 A/duck/Mongolia/742/2015 (A/H10N7) segment 1 (PB2) 3956.6 0.000000e+00 2244/2295 (97%) EPI704419 A/duck/Mongolia/655/2015 (A/H2N3) segment 1 (PB2) 3956.6 0.000000e+00 2244/2295 (97%) EPI704385 A/duck/Mongolia/482/2015 (A/H2N3) segment 1 (PB2) 3951.1 0.000000e+00 2243/2295 (97%) EPI704403 A/duck/Mongolia/521/2015 (A/H3N8) segment 1 (PB2) 3928.9 0.000000e+00 2239/2295 (97%) EPI773754 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 1 (PB2) 3906.8 0.000000e+00 2235/2295 (97%) EPI774332 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 1 (PB2) 3901.2 0.000000e+00 2234/2295 (97%) EPI774315 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 1 (PB2) 3895.7 0.000000e+00 2233/2295 (97%) EPI774198 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 1 (PB2) 3895.7 0.000000e+00 2233/2295 (97%) EPI836611 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI823745 A/wild duck/Tyva/35/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774495 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774455 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774447 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774439 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774349 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774323 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774274 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774215 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774207 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774190 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI774127 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 1 (PB2) 3890.2 0.000000e+00 2232/2295 (97%) EPI836603 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI823753 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774487 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774480 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774431 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774416 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774407 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774399 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774375 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774366 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774358 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774341 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774291 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774264 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774248 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI774139 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2231/2295 (97%) EPI823457 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774463 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774423 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774307 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774299 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774283 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774256 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774239 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774231 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774223 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774173 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774110 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2230/2295 (97%) EPI774503 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2229/2295 (97%) EPI774472 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2229/2295 (97%) EPI774383 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2229/2295 (97%) EPI774182 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2229/2295 (97%) EPI774147 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2229/2295 (97%) EPI774118 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2229/2295 (97%) EPI469157 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI774391 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2228/2295 (97%) EPI774165 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2229/2296 (97%) EPI774156 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2228/2295 (97%) EPI823896 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 1 (PB2) 3862.5 0.000000e+00 2228/2296 (97%) EPI858841 A/painted stork/India/10CA03/2016 (A/H5N8) segment 1 (PB2) 3860.6 0.000000e+00 2218/2282 (97%) EPI858833 A/duck/India/10CA01/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2225/2295 (96%) EPI806627 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 1 (PB2) 3840.3 0.000000e+00 2214/2281 (97%) EPI704288 A/duck/Mongolia/127/2015 (A/H4N6) segment 1 (PB2) 3840.3 0.000000e+00 2224/2296 (96%) EPI704264 A/duck/Mongolia/101/2015 (A/H4N6) segment 1 (PB2) 3840.3 0.000000e+00 2224/2296 (96%) EPI909465 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 1 (PB2) 3834.8 0.000000e+00 2224/2297 (96%) EPI704394 A/duck/Mongolia/520/2015 (A/H1N1) segment 1 (PB2) 3823.7 0.000000e+00 2220/2295 (96%) EPI683169 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%) EPI683168 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%) EPI617754 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI845251 A/environment/Sichuan/315069/2015 (A/H6N2) segment 1 (PB2) 3796.0 0.000000e+00 2215/2295 (96%
  4. niman
    Align Segment-ID Name Score E-Value Identity EPI909463 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI909455 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI860404 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI859654 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 7 (MP) 1809.0 0.000000e+00 981/982 (99%) EPI909447 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI909439 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI909367 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI881282 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 978/979 (99%) EPI881277 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 978/979 (99%) EPI869946 A/herring gull/Poland/84/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI860498 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI860396 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1799.8 0.000000e+00 979/982 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1799.8 0.000000e+00 979/982 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1799.8 0.000000e+00 979/982 (99%) EPI909431 A/turkey/Rostov/11/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI888091 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI888279 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 7 (MP) 1794.2 0.000000e+00 977/981 (99%) EPI909423 A/chicken/Voronezh/20/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI909415 A/chicken/Voronezh/19/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI909407 A/chicken/Voronezh/18/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI909399 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI909391 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI909383 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI887471 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 7 (MP) 1790.5 0.000000e+00 977/981 (99%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1790.5 0.000000e+00 975/978 (99%) EPI909469 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI890598 A/mallard duck/Netherlands/2/2015 (A/H7N7) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%)
  5. niman
    Align Segment-ID Name Score E-Value Identity EPI909462 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI909454 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI869939 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI909438 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI909430 A/turkey/Rostov/11/2017 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI909406 A/chicken/Voronezh/18/2017 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI909398 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 6 (NA) 2575.3 0.000000e+00 1402/1406 (99%) EPI909422 A/chicken/Voronezh/20/2017 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI909414 A/chicken/Voronezh/19/2017 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI909390 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI909382 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI909446 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI869935 A/mute swan/Poland/108/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI869933 A/chicken/Poland/79A/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI861014 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI861010 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI860510 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI860403 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI860395 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI859655 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI888278 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI881900 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI909366 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 6 (NA) 2551.3 0.000000e+00 1397/1406 (99%) EPI888090 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 6 (NA) 2551.3 0.000000e+00 1397/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1397/1406 (99%) EPI887470 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI881902 A/mute swan/Croatia/15/2017 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI873213 A/chicken/Croatia/103/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI869934 A/chicken/Poland/85A/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI861013 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1395/1406 (99%) EPI873627 A/mute swan/Croatia/104/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI861015 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1395/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI873625 A/mute swan/Croatia/9/2017 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI869937 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1393/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI869932 A/domestic goose/Poland/72/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%) EPI869925 A/domestic goose/Poland/33/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1394/1406 (99%)
  6. niman
    Align Segment-ID Name Score E-Value Identity EPI909460 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI909412 A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI869938 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3109.0 0.000000e+00 1697/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3105.3 0.000000e+00 1696/1704 (99%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI861012 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI860509 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI861222 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 4 (HA) 3085.0 0.000000e+00 1691/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI887468 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI881901 A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI869929 A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI873624 A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI888277 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI869926 A/domestic goose/Poland/72/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI881899 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1689/1705 (99%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1675/1686 (99%) EPI869927 A/chicken/Poland/79A/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI869928 A/chicken/Poland/85A/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI873626 A/mute swan/Croatia/104/2016 (A/H5N8) segment 4 (HA) 3040.7 0.000000e+00 1682/1700 (98%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%)
  7. niman
    Vector labs has released full H5N8 sequence from chicken in Kalmykia Russia, A/chicken/Kalmykia/2643/201.
  8. niman
  9. niman
    Highly pathogenic influenza A viruses (infection with) (non-poultry including wild birds), Uganda Information received on 27/01/2017 from Dr Nicholas Kauta, Director Animal Resources, Department of Livestock Health Health and Entomology , Ministry of Agriculture, Animal Industry and Fisheries, Entebbe, Uganda Summary Report type Follow-up report No. 1 Date of start of the event 02/01/2017 Date of confirmation of the event 14/01/2017 Report date 27/01/2017 Date submitted to OIE 27/01/2017 Reason for notification First occurrence of a listed disease in the country Causal agent Highly pathogenic influenza A virus Serotype H5N8 Nature of diagnosis Laboratory (advanced) This event pertains to a defined zone within the country Related reports Immediate notification (15/01/2017) Follow-up report No. 1 (27/01/2017) Outbreaks There are no new outbreaks in this report Epidemiology Source of the outbreak(s) or origin of infection Unknown or inconclusive Epidemiological comments Avian influenza (H5N8 strain) was detected and reported for the first time on 15 January 2017 in migratory birds, white-winged terns (Chlidonias leucopterus) at Lutembe beach, Kajjansi town council (Wakiso district) and in Kachanga village, Bukakata sub-county (Masaka district). An unconfirmed number of migratory birds have since then been reported to have died in Lutembe and Ddewe landing sites around Lake Victoria shores. In addition, white-winged terns, domestic ducks and chickens have been reported dead in different places in Bukakata (Masaka district) and Kalangala district. The Ministry of Agriculture, Animal Industry and Fisheries has informed the public that the risk to public health from the event is very low. All poultry farmers have been advised to take biosecurity and biosafety measures to control the outbreaks. In addition, the Ministry of Agriculture, Animal Industry and Fisheries has embarked on sensitizing, educating and training the high risk communities on the safety measures for limiting and controlling the outbreaks and a 3km (1.8 mile) quarantine/protection zone and 10 km (6.2 miles) surveillance zones have been put in place to prevent the spread of disease. A multi-spectral one health/eco health approach has been put in place to undertake investigations. Control measures Measures applied Disinfection / Disinfestation Quarantine Surveillance outside containment and/or protection zone Surveillance within containment and/or protection zone Vaccination permitted (if a vaccine exists) No treatment of affected animals Measures to be applied No other measures Diagnostic test results Laboratory name and type Species Test Test date Result National Animal Disease Diagnostic and Epidemiology Center (National laboratory) White-winged Tern reverse transcription - polymerase chain reaction (RT-PCR) 25/01/2017 Positive Future Reporting The event is continuing. Weekly follow-up reports will be submitted. http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapFullEventReport&reportid=22483
  10. niman
    Bird Flu: Strain found in Uganda is less lethal By Gerald Tenywa Added 30th January 2017 06:16 PM 0 Google +0 0 0 Print AAA Fill in your Name and Email Address to receive a Free Newsletter Slaughtering sick birds is one of the main ways how the bird flu passed from the birds to the human population The strain of Avian Influenza that is behind the massive death of wild migratory birds along the shores of Lake Victoria is not as lethal as earlier thought. According to Dr. Anthony Mbonye, Director Health Service (Clinical and Community Health), the strain of Avian Influenza also known as bird flu is H5N8 and not H5N1. Mbonye stated that the Ministry of Health and the Ministry of Agriculture, Animal Industry and Fisheries had earlier confirmed the outbreak of bird flu and previously stated that it was H5N1. “Laboratory results from the Uganda Virus Institute confirmed presence of H5N8 of Avian Influenza in all the samples collected, both domestic and wild migratory birds from Lutembe shores in Wakiso, and Bukakata in Masaka districts,” stated Mbonye. He added, “The H5N8 is a sub-type of Influenza A (called bird flu virus). H5N8 is considered as less pathogenic sub types for humans and no human cases have been confirmed in the past.” Mbonye warned the public to be alert and to report any likely transmission from wild birds to humans. He warned against handling dead birds or slaughtering sick birds pointing out that is one of the main ways how the bird flu caught pass from the birds to the human population. The virus, according to Mbonye’s statement does not survive at high temperatures and that poultry products should be thoroughly cooked. He also advised that if anybody gets a fever after slaughtering birds should report to health unit for further management of the condition. Any sudden death of birds whether wild or domestic and suspicious signs among human beings should be reported to the district veterinary Officer and district health Officer and the village health team. Other signs are lack of coordination, discoloration of wattles, combs and legs, soft shelled eggs, lack of appetite, diarrhoea, swelling of the head and eyelids, according to Mbonye’s statement. As a team of experts works tirelessly to contain the disease, according to Mbonye, the farmers as well as tourists should stay calm. He also appealed to the public to report any suspected cases to the nearest health facility. Three weeks ago, Christopher Kibazanga, the State Minister for Agriculture confirmed the outbreak of Avian Influenza in Uganda. He said migratory birds; the white winged black terns which migrate from Europe to escape winter could have come with the disease. What is it? Bird flu, is a contagious disease caused by a virus related to human influenza. Some strains of the disease have been passed to humans but this is very rare, and usually only occurs after very close contact with infected birds. While all bird species susceptible, domestic poultry are vulnerable to infection. Outbreaks can turn into epidemics among bird populations in short time. Symptoms According to Dr. Mbonye, the Director Health Service (Clinical and Community Health) said the disease has similar symptoms with the common flu and has an incubation period of three to four days and is accompanied by sneezing as well as coughing, high temperature, chest pain, difficulty in breathing, muscle aches but it does not spread through air. The keepers of birds should watch out for symptoms such as swollen head, discoloration of the neck, throat and loss of appetite. Respiratory distress, diarrhoea and when birds lay fewer eggs, according a statement from the Ministry of Health. - See more at: http://www.newvision.co.ug/new_vision/news/1445191/bird-flu-strain-uganda-lethal#sthash.kvyooEo8.dpuf
  11. niman
    PRESS RELEASE: Update on Avian Influenza. MAAIF, PHEOC, Diana Atwine and 7 others
  12. niman
    Uganda MoH confirms H5 is H5N8 https://twitter.com/MinofHealthUG
  13. niman
    Andrew G. Seguya‏@Andrewseguya Follow More Ministry of Agriculture reports that strain H5N8 identified in Uganda is mild with little effect in humans
  14. niman
    Align Segment-ID Name Score E-Value Identity EPI888601 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 6 (NA) 2608.6 0.000000e+00 1412/1412 (100%) EPI873621 A/mute swan/Croatia/102/2016 (A/H5N5) segment 6 (NA) 2597.5 0.000000e+00 1410/1412 (99%) EPI680489 A/common redshank/Singapore/F83-2/2015(H9N5) (A/H9N5) segment 6 (NA) 2508.9 0.000000e+00 1394/1412 (98%) EPI680487 A/common redshank/Singapore/F83-1/2015(H9N5) (A/H9N5) segment 6 (NA) 2508.9 0.000000e+00 1394/1412 (98%) EPI678380 A/common redshank/Singapore/F83-2/2015 (A/H9N5) segment 6 (NA) 2508.9 0.000000e+00 1394/1412 (98%) EPI678379 A/common redshank/Singapore/F83-1/2015 (A/H9N5) segment 6 (NA) 2508.9 0.000000e+00 1394/1412 (98%) EPI600154 A/migratory duck/Jiangxi/31577/2013 (A/H10N5) segment 6 (NA) 2459.0 0.000000e+00 1385/1412 (98%) EPI399897 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 6 (NA) 2381.5 0.000000e+00 1371/1412 (97%) EPI314739 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 6 (NA) 2381.5 0.000000e+00 1371/1412 (97%) EPI461090 A/duck/Guangxi/GXd-1/2009 (A/H6N5) segment 6 (NA) 2370.4 0.000000e+00 1369/1412 (96%) EPI268287 A/duck/Hunan/5613/2003 (A/H6N5) segment 6 (NA) 2309.4 0.000000e+00 1358/1412 (96%) EPI600798 A/migratory duck/Jiangxi/7231/2003 (A/H10N5) segment 6 (NA) 2298.4 0.000000e+00 1356/1412 (96%) EPI600792 A/migratory duck/Jiangxi/6847/2003 (A/H10N5) segment 6 (NA) 2281.7 0.000000e+00 1353/1412 (95%) EPI618625 A/mallard/Sweden/343/2002 (A/H12N5) segment 6 (NA) 2254.0 0.000000e+00 1348/1412 (95%) EPI377768 A/mallard/Sweden/30/2002 (A/H2N5) segment 6 (NA) 2248.5 0.000000e+00 1347/1412 (95%) EPI296546 A/Bewicks swan/Netherlands/1/2007 (A/H1N5) segment 6 (NA) 2220.8 0.000000e+00 1342/1412 (95%) EPI190186 A/mallard/Switzerland/WV4060167/2006 (A/H3N5) segment 6 (NA) 2220.8 0.000000e+00 1342/1412 (95%) EPI618665 A/mallard/Sweden/2213/2003 (A/H12N5) segment 6 (NA) 2215.3 0.000000e+00 1341/1412 (94%) EPI618645 A/mallard/Sweden/69794/2007 (A/H12N5) segment 6 (NA) 2215.3 0.000000e+00 1342/1413 (94%) EPI618630 A/mallard/Sweden/68529/2007 (A/H12N5) segment 6 (NA) 2215.3 0.000000e+00 1342/1413 (94%) EPI514607 A/mallard/Sweden/50709/2006 (A/H4N5) segment 6 (NA) 2215.3 0.000000e+00 1341/1412 (94%) EPI251818 A/mallard/Sweden/86/2003 (A/H12N5) segment 6 (NA) 2215.3 0.000000e+00 1341/1412 (94%) EPI618616 A/mallard/Sweden/60069/2007 (A/H12N5) segment 6 (NA) 2209.7 0.000000e+00 1341/1413 (94%) EPI618602 A/mallard/Sweden/50968/2006 (A/H12N5) segment 6 (NA) 2193.1 0.000000e+00 1337/1412 (94%) EPI296562 A/black-headed gull/Netherlands/1/2006 (A/H4N5) segment 6 (NA) 2193.1 0.000000e+00 1337/1412 (94%) EPI760593 A/wigeon/Italy/6127-23/2007 (A/H6N5) segment 6 (NA) 2187.6 0.000000e+00 1336/1412 (94%) EPI618810 A/mallard/Sweden/69773/2007 (A/H10N5) segment 6 (NA) 2187.6 0.000000e+00 1337/1413 (94%) EPI618769 A/mallard/Sweden/69792/2007 (A/H10N5) segment 6 (NA) 2187.6 0.000000e+00 1337/1413 (94%) EPI463356 A/mallard/Sweden/100127/2009 (A/H12N5) segment 6 (NA) 2182.0 0.000000e+00 1336/1413 (94%) EPI463355 A/mallard/Sweden/100117/2009 (A/H12N5) segment 6 (NA) 2182.0 0.000000e+00 1336/1413 (94%) EPI463353 A/mallard/Sweden/100103/2009 (A/H12N5) segment 6 (NA) 2182.0 0.000000e+00 1336/1413 (94%) EPI251663 A/mallard/Netherlands/2/1999 (A/H3N5) segment 6 (NA) 2182.0 0.000000e+00 1336/1413 (94%) EPI345387 A/Arenaria interpres/Belgium/02936pcs1/2010 (A/H12N5) segment 6 (NA) 2165.4 0.000000e+00 1333/1413 (94%) EPI476025 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 6 (NA) 2159.9 0.000000e+00 1332/1413 (94%) EPI295953 A/duck/Yangzhou/013/2008 (A/H6N5) segment 6 (NA) 2159.9 0.000000e+00 1331/1412 (94%) EPI174859 A/mallard/Denmark/77-64590-5/2005 (A/H7N5) segment 6 (NA) 2159.9 0.000000e+00 1327/1405 (94%) EPI397609 A/sentinel mallard/Germany/sum156/2007 (A/H6N5) segment 6 (NA) 2154.3 0.000000e+00 1331/1413 (94%) EPI259429 A/duck/Hokkaido/111/2009 (A/H1N5) segment 6 (NA) 2154.3 0.000000e+00 1330/1412 (94%) EPI476092 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 6 (NA) 2148.8 0.000000e+00 1330/1413 (94%) EPI476074 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 6 (NA) 2148.8 0.000000e+00 1330/1413 (94%) EPI328876 A/duck/Eastern China/031/2009 (A/H5N5) segment 6 (NA) 2148.8 0.000000e+00 1330/1413 (94%) EPI328868 A/duck/Eastern China/008/2008 (A/H5N5) segment 6 (NA) 2148.8 0.000000e+00 1329/1412 (94%) EPI160652 A/duck/Hokkaido/24/04 (A/H10N5) segment 6 (NA) 2148.8 0.000000e+00 1331/1414 (94%) EPI160651 A/duck/Mongolia/149/03 (A/H10N5) segment 6 (NA) 2148.8 0.000000e+00 1331/1414 (94%) EPI1871 A/duck/Hokkaido/1058/01 (A/H4N5) segment 6 (NA) 2143.2 0.000000e+00 1330/1414 (94%) EPI476059 A/black-headed gull/Iceland/1298/2011 (A/H10N5) segment 6 (NA) 2137.7 0.000000e+00 1329/1414 (93%) EPI181656 A/duck/Tsukuba/255/2005 (A/H8N5) segment 6 (NA) 2132.2 0.000000e+00 1329/1415 (93%) EPI363513 A/duck/Guizhou/888/2006 (A/H6N5) segment 6 (NA) 2126.6 0.000000e+00 1327/1414 (93%) EPI534745 A/mallard/Finland/10952/2008 (A/H4N5) segment 6 (NA) 2124.8 0.000000e+00 1322/1408 (93%) EPI357827 A/duck/Mongolia/OIE-7457/2011 (A/H3N5) segment 6 (NA) 2121.1 0.000000e+00 1325/1413 (93%) EPI268286 A/duck/Guangxi/1455/2004 (A/H6N5) segment 6 (NA) 2121.1 0.000000e+00 1326/1414 (93%) EPI1887 A/duck/Hokkaido/66/01 (A/H12N5) segment 6 (NA) 2121.1 0.000000e+00 1326/1414 (93%) EPI316866 A/mallard/Czech Republic/14924-1/2007 (A/H6N5) segment 6 (NA) 2117.4 0.000000e+00 1308/1389 (94%) EPI102207 A/duck/Taiwan/WB459/04 (A/H6N5) segment 6 (NA) 2115.5 0.000000e+00 1325/1414 (93%) EPI299316 A/avian/Japan/8KI0040/2008 (A/H3N5) segment 6 (NA) 2110.0 0.000000e+00 1325/1415 (93%) EPI442027 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 6 (NA) 2104.5 0.000000e+00 1321/1412 (93%) EPI268283 A/duck/Guangxi/585/2005 (A/H6N5) segment 6 (NA) 2104.5 0.000000e+00 1323/1414 (93%) EPI493827 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 6 (NA) 2098.9 0.000000e+00 1321/1413 (93%) EPI493819 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 6 (NA) 2098.9 0.000000e+00 1321/1413 (93%) EPI338864 A/aquatic bird/Korea/W69/2005 (A/H6N5) segment 6 (NA) 2098.9 0.000000e+00 1322/1414 (93%) EPI299284 A/avian/Japan/8KI0135/2008 (A/H6N5) segment 6 (NA) 2098.9 0.000000e+00 1323/1415 (93%) EPI181654 A/duck/Tsukuba/11/2005 (A/H6N5) segment 6 (NA) 2098.9 0.000000e+00 1322/1414 (93%) EPI268285 A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 6 (NA) 2093.4 0.000000e+00 1322/1415 (93%) EPI181655 A/duck/Shiga/69/2006 (A/H6N5) segment 6 (NA) 2093.4 0.000000e+00 1322/1415 (93%) EPI268284 A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 6 (NA) 2087.8 0.000000e+00 1321/1415 (93%) EPI268282 A/duck/Hunan/748/2005 (A/H6N5) segment 6 (NA) 2087.8 0.000000e+00 1320/1414 (93%) EPI764880 A/duck/Bangladesh/18-C/2013 (A/H1N5) segment 6 (NA) 2082.3 0.000000e+00 1304/1392 (93%) EPI493835 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 6 (NA) 2071.2 0.000000e+00 1316/1413 (93%) EPI764882 A/duck/Bangladesh/33-O/2013 (A/H2N5) segment 6 (NA) 2065.7 0.000000e+00 1302/1393 (93%) EPI618588 A/mallard/Sweden/3328/2003 (A/H12N5) segment 6 (NA) 2065.7 0.000000e+00 1314/1412 (93%) EPI182107 A/mallard/Netherlands/11/2007 (A/H6N5) segment 6 (NA) 2049.1 0.000000e+00 1314/1415 (92%) EPI442003 A/goose/Shandong/k1204/2009 (A/H5N5) segment 6 (NA) 2047.2 0.000000e+00 1289/1379 (93%) EPI408363 A/wild duck/Korea/SH12-7/2008 (A/H10N5) segment 6 (NA) 2043.5 0.000000e+00 1312/1414 (92%) EPI221527 A/Anas plathyrhynchos/Spain/1252/2007 (A/H6N5) segment 6 (NA) 2043.5 0.000000e+00 1313/1415 (92%) EPI454768 A/ruddy turnstone/Delaware/AI03-162/2003 (A/H0) segment 6 (NA) 2038.0 0.000000e+00 1312/1415 (92%) EPI454761 A/ruddy turnstone/Delaware/AI03-165/2003 (A/H9N5) segment 6 (NA) 2038.0 0.000000e+00 1312/1415 (92%) EPI343733 A/shorebird/Delaware Bay/246/2003 (A/H9N5) segment 6 (NA) 2032.4 0.000000e+00 1311/1415 (92%) EPI574266 A/mule duck/Bulgaria/674/2010 (A/H6N5) segment 6 (NA) 2026.9 0.000000e+00 1311/1416 (92%) EPI454689 A/ruddy turnstone/Delaware/AI03-193/2003 (A/H9N5) segment 6 (NA) 2026.9 0.000000e+00 1311/1416 (92%) EPI617866 A/black-headed gull/Republic of Georgia/9/2012 (A/H2N5) segment 6 (NA) 2021.4 0.000000e+00 1312/1418 (92%) EPI315149 A/duck/Vietnam/G18/2009 (A/H12N5) segment 6 (NA) 2010.3 0.000000e+00 1308/1416 (92%) EPI399888 A/duck/HuBei/03/2010 (A/H5N5) segment 6 (NA) 1949.3 0.000000e+00 1296/1415 (91%) EPI395082 A/swine/Hubei/10/2008 (A/H10N5) segment 6 (NA) 1949.3 0.000000e+00 1295/1414 (91%) EPI816852 A/chinstrap penguin/Antarctica/B04/2015 (A/H5N5) segment 6 (NA) 1938.3 0.000000e+00 1293/1414 (91%) EPI316499 A/chicken/Hubei/119/1983 (A/H10N5) segment 6 (NA) 1938.3 0.000000e+00 1294/1415 (91%) EPI534755 A/mallard/Finland/13016/2008 (A/H12N5) segment 6 (NA) 1927.2 0.000000e+00 1204/1284 (93%) EPI704456 A/duck/Hong Kong/934/1980 (A/H10N5) segment 6 (NA) 1916.1 0.000000e+00 1290/1415 (91%) EPI407981 A/mallard/Astrakhan/263/1982 (A/H14N5) segment 6 (NA) 1916.1 0.000000e+00 1289/1414 (91%) EPI3007 A/mallard/Astrakhan/263/1982 (A/H14N5) segment 6 (NA) 1916.1 0.000000e+00 1289/1414 (91%) EPI774536 A/Chinstrap penguin/Antarctica/15459/2015 (A/H5N5) segment 6 (NA) 1910.6 0.000000e+00 1281/1403 (91%) EPI442011 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 6 (NA) 1905.0 0.000000e+00 1287/1414 (91%) EPI290489 A/common murre/Oregon/19497-004/2005 (A/H9N5) segment 6 (NA) 1833.0 0.000000e+00 1276/1416 (90%) EPI418314 A/duck/Vietnam/OIE-707/2011 (A/H11N5) segment 6 (NA) 1825.6 0.000000e+00 1261/1395 (90%) EPI184639 A/mallard/Gurjev/263/1982 (A/H14N5) segment 6 (NA) 1797.9 0.000000e+00 1226/1351 (90%) EPI407910 A/shearwater/Australia/1/1973 (A/H6N5) segment 6 (NA) 1511.7 0.000000e+00 1227/1423 (86%) EPI242559 A/shearwater/Australia/1/1972 (A/H6N5) segment 6 (NA) 1511.7 0.000000e+00 1227/1423 (86%) EPI42204 A/shearwater/Australia/1/1973 (A/H6N5) segment 6 (NA) 1511.7 0.000000e+00 1227/1423 (86%) EPI1891 A/chicken/Taiwan/4801/90 (A/H6N5) segment 6 (NA) 1502.4 0.000000e+00 1225/1423 (86%) EPI243128 A/shearwater/Australia/1/1972 (A/H6N5) segment 6 (NA) 1495.1 0.000000e+00 1223/1422 (86%) EPI243127 A/shearwater/Australia/1/1972 (A/H6N5) segment 6 (NA) 1489.5 0.000000e+00 1224/1424 (85%)
  15. niman
    Align Segment-ID Name Score E-Value Identity EPI888600 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI873619 A/mute swan/Croatia/102/2016 (A/H5N5) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1688/1705 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI887468 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI881901 A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI869929 A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI869926 A/domestic goose/Poland/72/2016 (A/H5N8) segment 4 (HA) 3038.9 0.000000e+00 1684/1704 (98%) EPI873624 A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI869938 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI888277 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1683/1704 (98%) EPI881899 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 3027.8 0.000000e+00 1670/1686 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1683/1705 (98%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI869927 A/chicken/Poland/79A/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI860509 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI869928 A/chicken/Poland/85A/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI873626 A/mute swan/Croatia/104/2016 (A/H5N8) segment 4 (HA) 3013.0 0.000000e+00 1677/1700 (98%) EPI861012 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 4 (HA) 3009.3 0.000000e+00 1679/1704 (98%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3005.6 0.000000e+00 1678/1704 (98%) EPI861222 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 4 (HA) 3001.9 0.000000e+00 1676/1704 (98%) EPI873212 A/chicken/Croatia/103/2016 (A/H5N8) segment 4 (HA) 3000.1 0.000000e+00 1676/1702 (98%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1668/1704 (97%
  16. niman
    Isolate name: A/wigeon/Italy/16VIR9616-3/2016 Isolate ID: EPI_ISL_243085 Passage details/history: Type: A / H5N5 Lineage: Sample information Collection date: 2016-12-29 Host Other avian Additional host information: Domestic status: Wild Is vaccinated: Location: Italy / Friuli-Venezia Giulia / Province of Gorizia Additional location information: Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Istituto Zooprofilattico Sperimentale Delle Venezie Sample ID given by the sample provider: Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy Submitting lab: Istituto Zooprofilattico Sperimentale Delle Venezie Sample ID given by the submitting laboratory: Authors: Silvia,Ormelli; Sabrina,Marciano; Alessia,Schivo; Annalisa,Salviato; Adelaide,Milani; Gianpiero,Zamperini; Bianca,Zecchin; Alice,Fusaro; Calogero,Terregino; Isabella,Monne Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/wigeon/Italy/16VIR9616-3/2016 1704 EPI888600 NA A/wigeon/Italy/16VIR9616-3/2016 1418 EPI888601 Submitter information Submitter: Fusaro, Alice Submission Date: 2017-01-27 Last modifier: Fusaro, Alice Last modified: 2017-01-27 Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy
  17. niman
    Istituto Zooprofilattico Sperimentale Delle Venezie has released H5 and N5 sequences, A/wigeon/Italy/16VIR9616-3/2016, (at GISAID) from a wigeon at Grado Lagoon Italy
  18. niman
    H5N5 map update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1sCuerlmBTcpi1QLzYCES_Nkv-nw&ll=44.84461253959618%2C14.73848172500152&z=7
  19. niman
    Align Segment-ID Name Score E-Value Identity EPI873621 A/mute swan/Croatia/102/2016 (A/H5N5) segment 6 (NA) 2608.6 0.000000e+00 1412/1412 (100%) EPI888601 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 6 (NA) 2597.5 0.000000e+00 1410/1412 (99%) EPI680489 A/common redshank/Singapore/F83-2/2015(H9N5) (A/H9N5) segment 6 (NA) 2497.8 0.000000e+00 1392/1412 (98%) EPI680487 A/common redshank/Singapore/F83-1/2015(H9N5) (A/H9N5) segment 6 (NA) 2497.8 0.000000e+00 1392/1412 (98%) EPI678380 A/common redshank/Singapore/F83-2/2015 (A/H9N5) segment 6 (NA) 2497.8 0.000000e+00 1392/1412 (98%) EPI678379 A/common redshank/Singapore/F83-1/2015 (A/H9N5) segment 6 (NA) 2497.8 0.000000e+00 1392/1412 (98%) EPI600154 A/migratory duck/Jiangxi/31577/2013 (A/H10N5) segment 6 (NA) 2447.9 0.000000e+00 1383/1412 (97%) EPI399897 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 6 (NA) 2370.4 0.000000e+00 1369/1412 (96%) EPI314739 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 6 (NA) 2370.4 0.000000e+00 1369/1412 (96%) EPI461090 A/duck/Guangxi/GXd-1/2009 (A/H6N5) segment 6 (NA) 2359.3 0.000000e+00 1367/1412 (96%) EPI268287 A/duck/Hunan/5613/2003 (A/H6N5) segment 6 (NA) 2298.4 0.000000e+00 1356/1412 (96%) EPI600798 A/migratory duck/Jiangxi/7231/2003 (A/H10N5) segment 6 (NA) 2287.3 0.000000e+00 1354/1412 (95%) EPI600792 A/migratory duck/Jiangxi/6847/2003 (A/H10N5) segment 6 (NA) 2270.7 0.000000e+00 1351/1412 (95%) EPI618625 A/mallard/Sweden/343/2002 (A/H12N5) segment 6 (NA) 2243.0 0.000000e+00 1346/1412 (95%) EPI377768 A/mallard/Sweden/30/2002 (A/H2N5) segment 6 (NA) 2237.4 0.000000e+00 1345/1412 (95%) EPI296546 A/Bewicks swan/Netherlands/1/2007 (A/H1N5) segment 6 (NA) 2209.7 0.000000e+00 1340/1412 (94%) EPI190186 A/mallard/Switzerland/WV4060167/2006 (A/H3N5) segment 6 (NA) 2209.7 0.000000e+00 1340/1412 (94%) EPI618665 A/mallard/Sweden/2213/2003 (A/H12N5) segment 6 (NA) 2204.2 0.000000e+00 1339/1412 (94%) EPI618645 A/mallard/Sweden/69794/2007 (A/H12N5) segment 6 (NA) 2204.2 0.000000e+00 1340/1413 (94%) EPI618630 A/mallard/Sweden/68529/2007 (A/H12N5) segment 6 (NA) 2204.2 0.000000e+00 1340/1413 (94%) EPI514607 A/mallard/Sweden/50709/2006 (A/H4N5) segment 6 (NA) 2204.2 0.000000e+00 1339/1412 (94%) EPI251818 A/mallard/Sweden/86/2003 (A/H12N5) segment 6 (NA) 2204.2 0.000000e+00 1339/1412 (94%) EPI618616 A/mallard/Sweden/60069/2007 (A/H12N5) segment 6 (NA) 2198.6 0.000000e+00 1339/1413 (94%) EPI618602 A/mallard/Sweden/50968/2006 (A/H12N5) segment 6 (NA) 2182.0 0.000000e+00 1335/1412 (94%) EPI296562 A/black-headed gull/Netherlands/1/2006 (A/H4N5) segment 6 (NA) 2182.0 0.000000e+00 1335/1412 (94%) EPI760593 A/wigeon/Italy/6127-23/2007 (A/H6N5) segment 6 (NA) 2176.5 0.000000e+00 1334/1412 (94%) EPI618810 A/mallard/Sweden/69773/2007 (A/H10N5) segment 6 (NA) 2176.5 0.000000e+00 1335/1413 (94%) EPI618769 A/mallard/Sweden/69792/2007 (A/H10N5) segment 6 (NA) 2176.5 0.000000e+00 1335/1413 (94%) EPI463356 A/mallard/Sweden/100127/2009 (A/H12N5) segment 6 (NA) 2170.9 0.000000e+00 1334/1413 (94%) EPI463355 A/mallard/Sweden/100117/2009 (A/H12N5) segment 6 (NA) 2170.9 0.000000e+00 1334/1413 (94%) EPI463353 A/mallard/Sweden/100103/2009 (A/H12N5) segment 6 (NA) 2170.9 0.000000e+00 1334/1413 (94%) EPI251663 A/mallard/Netherlands/2/1999 (A/H3N5) segment 6 (NA) 2170.9 0.000000e+00 1334/1413 (94%) EPI345387 A/Arenaria interpres/Belgium/02936pcs1/2010 (A/H12N5) segment 6 (NA) 2154.3 0.000000e+00 1331/1413 (94%) EPI476025 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 6 (NA) 2148.8 0.000000e+00 1330/1413 (94%) EPI295953 A/duck/Yangzhou/013/2008 (A/H6N5) segment 6 (NA) 2148.8 0.000000e+00 1329/1412 (94%) EPI174859 A/mallard/Denmark/77-64590-5/2005 (A/H7N5) segment 6 (NA) 2148.8 0.000000e+00 1325/1405 (94%) EPI397609 A/sentinel mallard/Germany/sum156/2007 (A/H6N5) segment 6 (NA) 2143.2 0.000000e+00 1329/1413 (94%) EPI259429 A/duck/Hokkaido/111/2009 (A/H1N5) segment 6 (NA) 2143.2 0.000000e+00 1328/1412 (94%) EPI476092 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 6 (NA) 2137.7 0.000000e+00 1328/1413 (93%) EPI476074 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 6 (NA) 2137.7 0.000000e+00 1328/1413 (93%) EPI328876 A/duck/Eastern China/031/2009 (A/H5N5) segment 6 (NA) 2137.7 0.000000e+00 1328/1413 (93%) EPI328868 A/duck/Eastern China/008/2008 (A/H5N5) segment 6 (NA) 2137.7 0.000000e+00 1327/1412 (93%) EPI160652 A/duck/Hokkaido/24/04 (A/H10N5) segment 6 (NA) 2137.7 0.000000e+00 1329/1414 (93%) EPI160651 A/duck/Mongolia/149/03 (A/H10N5) segment 6 (NA) 2137.7 0.000000e+00 1329/1414 (93%) EPI1871 A/duck/Hokkaido/1058/01 (A/H4N5) segment 6 (NA) 2132.2 0.000000e+00 1328/1414 (93%) EPI476059 A/black-headed gull/Iceland/1298/2011 (A/H10N5) segment 6 (NA) 2126.6 0.000000e+00 1327/1414 (93%) EPI181656 A/duck/Tsukuba/255/2005 (A/H8N5) segment 6 (NA) 2121.1 0.000000e+00 1327/1415 (93%) EPI363513 A/duck/Guizhou/888/2006 (A/H6N5) segment 6 (NA) 2115.5 0.000000e+00 1325/1414 (93%) EPI534745 A/mallard/Finland/10952/2008 (A/H4N5) segment 6 (NA) 2113.7 0.000000e+00 1320/1408 (93%) EPI357827 A/duck/Mongolia/OIE-7457/2011 (A/H3N5) segment 6 (NA) 2110.0 0.000000e+00 1323/1413 (93%) EPI268286 A/duck/Guangxi/1455/2004 (A/H6N5) segment 6 (NA) 2110.0 0.000000e+00 1324/1414 (93%) EPI1887 A/duck/Hokkaido/66/01 (A/H12N5) segment 6 (NA) 2110.0 0.000000e+00 1324/1414 (93%) EPI316866 A/mallard/Czech Republic/14924-1/2007 (A/H6N5) segment 6 (NA) 2106.3 0.000000e+00 1306/1389 (94%) EPI102207 A/duck/Taiwan/WB459/04 (A/H6N5) segment 6 (NA) 2104.5 0.000000e+00 1323/1414 (93%) EPI299316 A/avian/Japan/8KI0040/2008 (A/H3N5) segment 6 (NA) 2098.9 0.000000e+00 1323/1415 (93%) EPI442027 A/quail/Jiangsu/k0104/2010 (A/H5N5) segment 6 (NA) 2093.4 0.000000e+00 1319/1412 (93%) EPI268283 A/duck/Guangxi/585/2005 (A/H6N5) segment 6 (NA) 2093.4 0.000000e+00 1321/1414 (93%) EPI493827 A/duck/Guangdong/wy19/2008 (A/H5N5) segment 6 (NA) 2087.8 0.000000e+00 1319/1413 (93%) EPI493819 A/duck/Guangdong/wy11/2008 (A/H5N5) segment 6 (NA) 2087.8 0.000000e+00 1319/1413 (93%) EPI338864 A/aquatic bird/Korea/W69/2005 (A/H6N5) segment 6 (NA) 2087.8 0.000000e+00 1320/1414 (93%) EPI299284 A/avian/Japan/8KI0135/2008 (A/H6N5) segment 6 (NA) 2087.8 0.000000e+00 1321/1415 (93%) EPI181654 A/duck/Tsukuba/11/2005 (A/H6N5) segment 6 (NA) 2087.8 0.000000e+00 1320/1414 (93%) EPI268285 A/mallard/Jiangxi/8341/2004 (A/H6N5) segment 6 (NA) 2082.3 0.000000e+00 1320/1415 (93%) EPI181655 A/duck/Shiga/69/2006 (A/H6N5) segment 6 (NA) 2082.3 0.000000e+00 1320/1415 (93%) EPI268284 A/mallard/Jiangxi/8346/2004 (A/H6N5) segment 6 (NA) 2076.8 0.000000e+00 1319/1415 (93%) EPI268282 A/duck/Hunan/748/2005 (A/H6N5) segment 6 (NA) 2076.8 0.000000e+00 1318/1414 (93%) EPI764880 A/duck/Bangladesh/18-C/2013 (A/H1N5) segment 6 (NA) 2071.2 0.000000e+00 1302/1392 (93%) EPI493835 A/duck/Guangdong/wy24/2008 (A/H5N5) segment 6 (NA) 2060.1 0.000000e+00 1314/1413 (92%) EPI764882 A/duck/Bangladesh/33-O/2013 (A/H2N5) segment 6 (NA) 2054.6 0.000000e+00 1300/1393 (93%) EPI618588 A/mallard/Sweden/3328/2003 (A/H12N5) segment 6 (NA) 2054.6 0.000000e+00 1312/1412 (92%) EPI182107 A/mallard/Netherlands/11/2007 (A/H6N5) segment 6 (NA) 2038.0 0.000000e+00 1312/1415 (92%) EPI442003 A/goose/Shandong/k1204/2009 (A/H5N5) segment 6 (NA) 2036.1 0.000000e+00 1287/1379 (93%) EPI408363 A/wild duck/Korea/SH12-7/2008 (A/H10N5) segment 6 (NA) 2032.4 0.000000e+00 1310/1414 (92%) EPI221527 A/Anas plathyrhynchos/Spain/1252/2007 (A/H6N5) segment 6 (NA) 2032.4 0.000000e+00 1311/1415 (92%) EPI454768 A/ruddy turnstone/Delaware/AI03-162/2003 (A/H0) segment 6 (NA) 2026.9 0.000000e+00 1310/1415 (92%) EPI454761 A/ruddy turnstone/Delaware/AI03-165/2003 (A/H9N5) segment 6 (NA) 2026.9 0.000000e+00 1310/1415 (92%) EPI343733 A/shorebird/Delaware Bay/246/2003 (A/H9N5) segment 6 (NA) 2021.4 0.000000e+00 1309/1415 (92%) EPI574266 A/mule duck/Bulgaria/674/2010 (A/H6N5) segment 6 (NA) 2015.8 0.000000e+00 1309/1416 (92%) EPI454689 A/ruddy turnstone/Delaware/AI03-193/2003 (A/H9N5) segment 6 (NA) 2015.8 0.000000e+00 1309/1416 (92%) EPI617866 A/black-headed gull/Republic of Georgia/9/2012 (A/H2N5) segment 6 (NA) 2010.3 0.000000e+00 1310/1418 (92%) EPI315149 A/duck/Vietnam/G18/2009 (A/H12N5) segment 6 (NA) 1999.2 0.000000e+00 1306/1416 (92%) EPI399888 A/duck/HuBei/03/2010 (A/H5N5) segment 6 (NA) 1938.3 0.000000e+00 1294/1415 (91%) EPI395082 A/swine/Hubei/10/2008 (A/H10N5) segment 6 (NA) 1938.3 0.000000e+00 1293/1414 (91%) EPI816852 A/chinstrap penguin/Antarctica/B04/2015 (A/H5N5) segment 6 (NA) 1927.2 0.000000e+00 1292/1415 (91%) EPI316499 A/chicken/Hubei/119/1983 (A/H10N5) segment 6 (NA) 1927.2 0.000000e+00 1292/1415 (91%) EPI534755 A/mallard/Finland/13016/2008 (A/H12N5) segment 6 (NA) 1916.1 0.000000e+00 1202/1284 (93%) EPI704456 A/duck/Hong Kong/934/1980 (A/H10N5) segment 6 (NA) 1905.0 0.000000e+00 1288/1415 (91%) EPI407981 A/mallard/Astrakhan/263/1982 (A/H14N5) segment 6 (NA) 1905.0 0.000000e+00 1287/1414 (91%) EPI3007 A/mallard/Astrakhan/263/1982 (A/H14N5) segment 6 (NA) 1905.0 0.000000e+00 1287/1414 (91%) EPI774536 A/Chinstrap penguin/Antarctica/15459/2015 (A/H5N5) segment 6 (NA) 1899.5 0.000000e+00 1280/1404 (91%) EPI442011 A/goose/Guangdong/k0103/2010 (A/H5N5) segment 6 (NA) 1893.9 0.000000e+00 1285/1414 (90%) EPI290489 A/common murre/Oregon/19497-004/2005 (A/H9N5) segment 6 (NA) 1821.9 0.000000e+00 1274/1416 (89%) EPI418314 A/duck/Vietnam/OIE-707/2011 (A/H11N5) segment 6 (NA) 1814.5 0.000000e+00 1259/1395 (90%) EPI184639 A/mallard/Gurjev/263/1982 (A/H14N5) segment 6 (NA) 1786.8 0.000000e+00 1224/1351 (90%) EPI407910 A/shearwater/Australia/1/1973 (A/H6N5) segment 6 (NA) 1500.6 0.000000e+00 1225/1423 (86%) EPI242559 A/shearwater/Australia/1/1972 (A/H6N5) segment 6 (NA) 1500.6 0.000000e+00 1225/1423 (86%) EPI42204 A/shearwater/Australia/1/1973 (A/H6N5) segment 6 (NA) 1500.6 0.000000e+00 1225/1423 (86%) EPI1891 A/chicken/Taiwan/4801/90 (A/H6N5) segment 6 (NA) 1491.4 0.000000e+00 1223/1423 (85%) EPI243128 A/shearwater/Australia/1/1972 (A/H6N5) segment 6 (NA) 1484.0 0.000000e+00 1221/1422 (85%) EPI243127 A/shearwater/Australia/1/1972 (A/H6N5) segment 6 (NA) 1478.4 0.000000e+00 1222/1424 (85%)
  20. niman
    Align Segment-ID Name Score E-Value Identity EPI873619 A/mute swan/Croatia/102/2016 (A/H5N5) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI888600 A/wigeon/Italy/16VIR9616-3/2016 (A/H5N5) segment 4 (HA) 3120.1 0.000000e+00 1699/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1685/1705 (98%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI869924 A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA) 3027.8 0.000000e+00 1682/1704 (98%) EPI887468 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI881901 A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI869929 A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI869926 A/domestic goose/Poland/72/2016 (A/H5N8) segment 4 (HA) 3022.2 0.000000e+00 1681/1704 (98%) EPI873624 A/mute swan/Croatia/9/2017 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI869938 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3020.4 0.000000e+00 1681/1704 (98%) EPI888277 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 4 (HA) 3016.7 0.000000e+00 1680/1704 (98%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3016.7 0.000000e+00 1680/1704 (98%) EPI881899 A/breeder duck/Croatia/21/2017 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI873659 A/Eurasian wigeon/Netherlands/1/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1668/1686 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3014.9 0.000000e+00 1680/1704 (98%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3009.3 0.000000e+00 1679/1704 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3009.3 0.000000e+00 1679/1704 (98%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3009.3 0.000000e+00 1679/1704 (98%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3009.3 0.000000e+00 1680/1705 (98%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3009.3 0.000000e+00 1679/1704 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI869927 A/chicken/Poland/79A/2016 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI860509 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3003.8 0.000000e+00 1678/1704 (98%) EPI869928 A/chicken/Poland/85A/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 2998.2 0.000000e+00 1677/1704 (98%) EPI873626 A/mute swan/Croatia/104/2016 (A/H5N8) segment 4 (HA) 2996.4 0.000000e+00 1674/1700 (98%) EPI861012 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 4 (HA) 2992.7 0.000000e+00 1676/1704 (98%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 2989.0 0.000000e+00 1675/1704 (98%) EPI861222 A/tufted duck/Germany-SN/R8795/2016 (A/H5N8) segment 4 (HA) 2985.3 0.000000e+00 1673/1704 (98%) EPI873212 A/chicken/Croatia/103/2016 (A/H5N8) segment 4 (HA) 2983.5 0.000000e+00 1673/1702 (98%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%
  21. niman
    Isolate name: A/mute swan/Croatia/102/2016 Isolate ID: EPI_ISL_240101 Passage details/history: 0 Type: A / H5N5 Lineage: Sample information Collection date: 2016-12-27 Host Cygnus olor Additional host information: Domestic status: Wild Is vaccinated: Location: Croatia / Sisacko-Moslavacka Zupanija Additional location information: Crkveni Bok Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Croatian Veterinary Institute Sample ID given by the submitting laboratory: Authors: Savić, Vladimir Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence HA A/mute swan/Croatia/102/2016 1732 EPI873619 NA A/mute swan/Croatia/102/2016 1430 EPI873621 Submitter information Submitter: Savić, Vladimir Submission Date: 2017-01-02 Last modifier: Savić, Vladimir Last modified: 2017-01-11 Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia
  22. niman
    Croatian Veterinary Institute Poultry Centre has released H5 and N5 sequences, A/mute swan/Croatia/102/2016, (at GISAID) from a mute swan jn Crkveni Bok Croatia.
  23. niman
    Avian extends out - Steinburg triggers disaster alarm from January 26, 2017 18,400 animals have already been killed. Now the bird flu has broken out in a third stable with 15,300 turkeys. Share1.2k Twittern divide 0 enlarge The district administration has called for a disaster alarm in order to be able to provide additional staff at the police, fire brigade and other auxiliary staff in the near future. Photo: Daniel Friederichs 1 of 2 KIEL / GREVENKOP | Although 18,400 animals have been killed, the avian influenza spreads on the turkey operation in Steinburg further. Meanwhile, all four positions of operation in Steinburg are affected, as Agriculture Minister Robert Habeck (Green) on Thursday said on the sidelines of the parliament session. According to the Avian Influenza Regulation, the killing of the remaining 15,300 animals of the plant would be initiated as soon as possible. It is still unclear how the virus can spread despite numerous protective measures. The two attitudes in Grevenkop and Elskop were closed off early in the morning. To protect against the spread of animal disease is prohibited from strangers, to enter the premises . The Kreis Steinburg extended the Sperrzzirk and the observation area around the enterprise. He also triggered catastrophic alarms in order to be able to approach additional staff at the police, fire brigade and other auxiliary staff in the short term. All holdings of Schleswig-Holstein's largest turkey mast farm in the district of Steinburg are affected by bird flu. Photo: Kristina Röhrs How the virus got there is unclear. Habeck pointed out that the turkeys are open on the side. "We have a new virus," Habeck said. He is concerned that "we are at the beginning of a new wave". In the plant the avian influenza had broken out at the weekend. A mutated bird flu pathogen (H5N5) was detected at two sites of a turkey mast farm in the district of Steinburg. "The new attitudes are spatially removed from the first two," explains the ministry. MORE ON THE SUBJECT AVIAN INFLUENZA:H5N5 in Schleswig-Holstein: What is behind the subtypes? To clarify the cause, the FLI has sent an expert team on epidemiological inquiry at the request of the country. In doing so, all possible entry and dissemination routes - including interlacing, feed, trade and transport routes as well as management of the farms or possible entries by wild birds - are examined. http://www.shz.de/lokales/norddeutsche-rundschau/gefluegelpest-weitet-sich-aus-kreis-steinburg-loest-katastrophenalarm-aus-id15938851.html
  24. niman
    H5N8 map update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1aNOepBDPUd0zdRnQE1UbSW8djsk&ll=53.82762663079905%2C9.513855553205872&z=13
  25. niman
    date 26/01/2017 The avian influenza in a turkey factory in the district of Steinburg has expanded. About 15,300 animals in two other poses have to be killed. The plant in the district of Steinburg was closed off.© dpa After the poultry pester of the subtype H5N5 was detected in a poultry keeping in the district of Steinburg on Monday, further holdings of the same plant are affected. The National Reference Laboratory for Avian Influenza, the Friedrich Löffler Institute, also showed the virus in the night to Thursday in the sites of Grevenkop and Elskop. Attitudes were blocked The avian influenza regulation prescribes that the remaining 15,300 animals of the plant have to be killed. Previously, 18,400 animals of the Steinburg factory had already been killed or died. The two sites were closed off. In order to protect the animals from being carried over, third parties are prohibited from entering the site. The Kreis Steinburg extended the Sperrzzirk and the observation area around the enterprise. He also triggered a catastrophe alarm in order to be able to approach additional staff at the police, fire brigade and other auxiliary staff in the short term. First detection of H5N5 in poultry farming The Friedrich-Löffler-Institut has, at the request of the country, sent an expert team to the district of Steinburg to clarify the cause of the outbreak. All possible entry and dissemination routes are examined. The virus is the subtype H5N5, which has not yet occurred in any European animal husbandry up to the occurrence in the poultry keeping in Steinburg. It is highly aggressive, as is the case with the H5N8 exciter responsible for the avian influenza outbreaks. In the first turkeys, more than half of the 3,400 animals died of the disease within 48 hours, all others having disease symptoms.
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