niman

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Human infection with avian influenza A(H7N9) virus – China Disease outbreak news 17 November 2016 On 11 November 2016, the National Health and Family Planning Commission (NHFPC) of China notified WHO of two additional cases of laboratory-confirmed human infection with avian influenza A(H7N9) virus. Details of the cases A 77-year-old female who lived in Zhejiang Province developed symptoms on 6 October 2016. She had an exposure history to live poultry before the onset of symptoms. She was reported to be in a severe condition. An 89-year-old male who lived in Jiangsu Province developed symptoms on 20 October 2016. He had no known exposure history to live poultry. He was reported to be in a severe condition. A total of 800 laboratory-confirmed human cases with avian influenza A (H7N9) virus infection have been reported through IHR notification since early 2013. Public health response The Chinese Government has taken the following surveillance and control measures: Strengthen surveillance and assessment analysis. Further enhance medical care of the cases. Conduct public risk communication. WHO risk assessment Most human cases had history of exposure to the A(H7N9) virus through contact with infected poultry or contaminated environments, including live poultry markets. As long as the virus continues to be detected in animals and environments, further human cases can be expected. Although small clusters of human cases with influenza A(H7N9) viruses have been reported including those involving healthcare workers, current epidemiological and virological evidence suggests that this virus has not acquired the ability of sustained transmission among humans. Therefore further community level spread is considered unlikely. Human infections with the A(H7N9) virus are unusual and should be monitored closely in order to identify changes in the virus and/or its transmissibility in humans which may have a serious public health impact. WHO advice WHO advises that travellers to countries with known outbreaks of avian influenza should avoid, if possible, poultry farms, contact with animals in live bird markets, entering areas where poultry may be slaughtered, or contact with any surfaces that appear to be contaminated with faeces from poultry or other animals. Travellers should also wash their hands often with soap and water, and follow good food safety and good food hygiene practices. WHO does not advise special screening at points of entry with regard to this event, nor does it currently recommend any travel or trade restrictions. As always, a diagnosis of infection with an avian influenza virus should be considered in individuals who develop severe acute respiratory symptoms while travelling in or soon after returning from an area where avian influenza is a concern. WHO encourages countries to continue strengthening influenza surveillance, including surveillance for severe acute respiratory infections (SARI) and influenza-like illness (ILI) and to carefully review any unusual patterns, ensure reporting of human infections under the IHR (2005), and continue national health preparedness actions.

A 77-year-old female who lived in Zhejiang Province developed symptoms on 6 October 2016. She had an exposure history to live poultry before the onset of symptoms. She was reported to be in a severe condition. http://www.who.int/csr/don/17-november-2016-ah7n9-china/en/

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Name of sender of the report Dr Nicholas Kauta Telephone (256-414) 320 627 Position Director Animal Resources Fax (256- 414) 321 255 Address P.O. Box 513 Entebbe Entebbe Email [email protected] Date submitted to OIE 16/01/2017 Animal type Terrestrial Date of report 15/01/2017 Disease Highly pathogenic avian influenza Date of start of the event 02/01/2017 Causal Agent Highly pathogenic avian influenza virus Date of confirmation of the event 14/01/2017 Serotype(s) H5 Diagnosis Laboratory (advanced) Reason First occurrence of a listed disease in the country Clinical signs Yes Country or zone a zone or compartment Number of reported outbreaks submitted= 1, Draft= 0 Outbreak details District Number of outbreaks Sub county Parish Unit Type Location Latitude Longitude Start Date End Date: Masaka- (this report - submitted) - Bukakata Bukibanga Village Kachanga -0.31173552 32.0024871 02/01/2017 Species Measuring units Susceptible Cases Deaths Destroyed Slaughtered Birds Animals 30000 20 7 0 0 Affected Population Outbreak summary: Total outbreaks = 1 (Submitted) Species Susceptible Cases Deaths Destroyed Slaughtered Birds 30000 20 7 0 0 Epidemiology Epidemiological comments There are still continuous deaths of wild ducks and birds along the shores and islands of Lake Victoria in Masaka and Wakiso districts. In Masaka alone, wild and domestic birds are dying at alarming numbers and in Lutembe wetland white-winged terns are the ones dying. This is already a big threat to over thirty million domestic poultry in Uganda which calls for an urgent response to control the spread of the disease from wild birds to domestic birds. http://www.oie.int/wahis_2/temp/reports/en_imm_0000022359_20170116_184503.pdf

There are still continuous deaths of wild ducks and birds along the shores and islands of Lake Victoria in Masaka and Wakiso districts. In Masaka alone, wild and domestic birds are dying at alarming numbers and in Lutembe wetland white-winged terns are the ones dying. This is already a big threat to over thirty million domestic poultry in Uganda which calls for an urgent response to control the spread of the disease from wild birds to domestic birds. http://www.oie.int/wahis_2/temp/reports/en_imm_0000022378_20170116_184824.pdf

Align Segment-ID Name Score E-Value Identity EPI872952 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI657580 A/chicken/Jiangxi/12.05 NCDZT0040/2014(H5N6) (A/H5N6) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI657548 A/chicken/Jiangxi/12.05 NCDZT0020/2014(H5N6) (A/H5N6) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI656900 A/environment/Jiangxi/02.10 NCDZT009/2015(H5N6) (A/H5N6) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI593578 A/chicken/Jiangxi/18523/2014 (A/H0) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI593515 A/chicken/Jiangxi/18491/2014 (A/H0) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI593455 A/chicken/Jiangxi/18470/2014 (A/H0) segment 8 (NS) 1520.9 0.000000e+00 833/838 (99%) EPI838185 A/chicken/Guangdong/SIC18/2014 (A/H9N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI838182 A/chicken/Guangxi/SIC19/2014 (A/H9N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI736589 A/Anser fabalis/Anhui/L139/2014 (A/H9N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI690482 A/Zhongshan/201501/2015 (A/H9N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI661081 A/chicken/Jiangxi/01.14 NCJD181-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI658073 A/environment/Jiangxi/05.07 NCJD0022D/2015(H5N6) (A/H5N6) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI657980 A/duck/Jiangxi/04.01 NCDZT0334-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI657964 A/duck/Jiangxi/04.01 NCDZT0312-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI657596 A/chicken/Jiangxi/12.05 NCDZT009/2014(H5N6) (A/H5N6) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI657588 A/chicken/Jiangxi/12.05 NCDZT007/2014(H5N6) (A/H5N6) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI593628 A/chicken/Jiangxi/19426/2014 (A/H0) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI593432 A/chicken/Jiangxi/18466/2014 (A/H0) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI578202 A/chicken/Dongguan/1674/2014 (A/H9N2) segment 8 (NS) 1515.4 0.000000e+00 832/838 (99%) EPI838197 A/chicken/Sichuan/SIC36/2014 (A/H9N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI661545 A/chicken/Jiangxi/02.05 YGYXG035-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI658489 A/chicken/Jiangxi/12.05 NCNP006/2014(H5N6) (A/H5N6) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI657564 A/chicken/Jiangxi/12.05 NCDZT0031/2014(H5N6) (A/H5N6) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI657556 A/chicken/Jiangxi/12.05 NCDZT0021/2014(H5N6) (A/H5N6) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI657540 A/chicken/Jiangxi/12.05 NCDZT0012/2014(H5N6) (A/H5N6) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI656564 A/chicken/Jiangxi/04.01 NCJD131-1-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI654203 A/GD-ZS_167/H9N2/2014-01 (A/H9N2) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI838166 A/chicken/Hubei/SIC3/2012 (A/H9N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI749715 A/Environment/Guangdong/40113/2015 (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI664567 A/environment/Yunnan/03.17 DQJT0015-Z/2015(Mixed) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI664495 A/chicken/Jiangxi/04.01 NCDZT0048-O/2015(Mixed) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI664463 A/chicken/Hunan/12.17 YYGK0048/2014(Mixed) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI661521 A/chicken/Jiangxi/01.14 NCJD125-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI660857 A/environment/Jiangxi/01.14 NCJD005/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658457 A/environment/Jiangxi/05.07 NCJD0095C/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658337 A/duck/Jiangxi/05.07 NCJD0067A-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658329 A/chicken/Jiangxi/04.01 NCNP0065-Z-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658257 A/environment/Jiangxi/05.07 NCJD0052C/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658225 A/chicken/Jiangxi/05.06 NCDZT0043B-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658217 A/chicken/Jiangxi/04.01 NCDZT0042-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658185 A/chicken/Jiangxi/05.06 NCDZT0003C-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658153 A/Pigeon/Jiangxi/04.01 NCDZT0353-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658145 A/Pigeon/Jiangxi/04.01 NCDZT0352-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658121 A/Pigeon/Jiangxi/04.01 NCDZT0348-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658105 A/Pigeon/Jiangxi/04.01 NCDZT0347-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI658057 A/environment/Jiangxi/05.07 NCJD0017D/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657948 A/chicken/Jiangxi/04.01 NCDZT0292-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657932 A/chicken/Jiangxi/04.01 NCDZT0285-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657924 A/chicken/Jiangxi/04.01 NCDZT0279-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657860 A/chicken/Jiangxi/04.01 NCDZT0175-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657852 A/chicken/Jiangxi/04.01 NCDZT0173-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657820 A/chicken/Jiangxi/04.01 NCJD0010-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657620 A/environment/Jiangxi/02.10 NCDZT16/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI657188 A/environment/Jiangxi/02.10 NCDZT018/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI656892 A/Pigeon/Jiangxi/02.10 NCDZT0017-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI656884 A/environment/Jiangxi/02.10 NCDZT023/2015(H5N6) (A/H5N6) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI578221 A/chicken/Dongguan/1693/2014 (A/H0) segment 8 (NS) 1502.4 0.000000e+00 829/838 (98%) EPI692043 A/pigeon/Hubei/269/2012 (A/H9N2) segment 8 (NS) 1500.6 0.000000e+00 829/838 (98%) EPI593529 A/chicken/Jiangxi/18500/2014 (A/H0) segment 8 (NS) 1500.6 0.000000e+00 828/838 (98%) EPI838176 A/chicken/Guangxi/SIC15/2013 (A/H9N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI658289 A/chicken/Jiangxi/05.06 NCDZT0058B-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI658089 A/environment/Jiangxi/05.07 NCJD0027D/2015(H5N6) (A/H5N6) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI657900 A/chicken/Jiangxi/04.01 NCDZT0206-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI657876 A/chicken/Jiangxi/04.01 NCDZT0192-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI657204 A/environment/JiangXi/02.10 NCNP0019/2015(H5N6) (A/H5N6) segment 8 (NS) 1498.8 0.000000e+00 830/839 (98%) EPI838188 A/chicken/Guangdong/SIC27/2014 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI692041 A/pigeon/Hubei/228/2012 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI683110 A/duck/Wuhan/WHYF14/2014 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI683109 A/chicken/Wuhan/JXQL01/2015 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI658465 A/environment/Jiangxi/05.07 NCJD0098C/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI658041 A/environment/Jiangxi/05.07 NCJD0012D/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI657940 A/chicken/Jiangxi/04.01 NCDZT0291-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI657908 A/chicken/Jiangxi/04.01 NCDZT0238-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI657884 A/chicken/Jiangxi/04.01 NCDZT0203-P/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI657836 A/chicken/Jiangxi/04.01 NCJD0146-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI657316 A/chicken/Jiangxi/04.01 NCDZT0040-O/2015(H5N6) (A/H5N6) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI654120 A/Chicken/GD-ZS_720/H7N9/2014 (A/H7N9) segment 8 (NS) 1493.2 0.000000e+00 826/835 (98%) EPI628714 A/Environment/Guangxi/06891/2014 (A/H7N9) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI602474 A/chicken/Jiangxi/5195/2014 (A/H10N8) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI602142 A/chicken/Jiangxi/18955/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI602124 A/chicken/Jiangxi/18474/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI602090 A/chicken/Jiangxi/20471/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601956 A/chicken/Jiangxi/1208/2014 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601928 A/chicken/Jiangxi/23786/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601919 A/chicken/Jiangxi/23241/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601891 A/chicken/Jiangxi/1271/2014 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601880 A/chicken/Jiangxi/36242/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601813 A/chicken/Jiangxi/36266/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601580 A/chicken/Jiangxi/1206/2014 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601552 A/chicken/Jiangxi/36240/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601526 A/chicken/Jiangxi/20420/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601506 A/chicken/Jiangxi/36278/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601310 A/chicken/Jiangxi/1247/2014 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI601235 A/duck/Jiangxi/36477/2013 (A/H0) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI600086 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI600079 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI600072 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI599820 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI599746 A/chicken/Jiangxi/30772/2013 (A/H9N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%)

Align Segment-ID Name Score E-Value Identity EPI872951 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI628609 A/Hubei/34007/2015 (A/H7N9) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI683067 A/duck/Wuhan/WHYF14/2014 (A/H9N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI683065 A/chicken/Wuhan/JXQL01/2015 (A/H9N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI593596 A/chicken/Jiangxi/18526/2014 (A/H0) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI593449 A/chicken/Jiangxi/18470/2014 (A/H0) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI593439 A/chicken/Jiangxi/18468/2014 (A/H0) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI578215 A/chicken/Dongguan/1693/2014 (A/H0) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI593523 A/chicken/Jiangxi/18500/2014 (A/H0) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI593508 A/chicken/Jiangxi/18491/2014 (A/H0) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI578199 A/chicken/Dongguan/1674/2014 (A/H9N2) segment 5 (NP) 2676.9 0.000000e+00 1481/1497 (98%) EPI838113 A/chicken/Sichuan/SIC36/2014 (A/H9N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593635 A/chicken/Jiangxi/19463/2014 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593572 A/chicken/Jiangxi/18523/2014 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593561 A/chicken/Jiangxi/18517/2014 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593534 A/chicken/Jiangxi/18502/2014 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593461 A/chicken/Jiangxi/18476/2014 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593426 A/chicken/Jiangxi/18466/2014 (A/H0) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI593610 A/chicken/Jiangxi/18527/2014 (A/H0) segment 5 (NP) 2669.5 0.000000e+00 1478/1495 (98%) EPI593623 A/chicken/Jiangxi/19426/2014 (A/H0) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI691696 A/pigeon/Hubei/269/2012 (A/H9N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI594446 A/chicken/Jinan/3925/2013 (A/H9N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI557814 A/Anser fabalis/China/HuBS428/2014 (A/H9N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI691974 A/pigeon/Hubei/227/2012 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI602139 A/chicken/Jiangxi/18955/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI602087 A/chicken/Jiangxi/20471/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI602007 A/chicken/Jiangxi/23786/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI601926 A/chicken/Jiangxi/23273/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI601916 A/chicken/Jiangxi/23241/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI601480 A/chicken/Jiangxi/36256/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI601306 A/chicken/Jiangxi/1247/2014 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI601044 A/chicken/Jiangxi/36263/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600104 A/chicken/Jiangxi/21468/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600097 A/chicken/Jiangxi/20927/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600083 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600076 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600069 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600062 A/chicken/Jiangxi/17913/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI600055 A/chicken/Jiangxi/17403/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599817 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599729 A/chicken/Jiangxi/28113/2013 (A/H10N8) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599707 A/chicken/Jiangxi/23274/2013 (A/H10N8) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599692 A/chicken/Jiangxi/23252/2013 (A/H10N8) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599531 A/chicken/Jiangxi/21984/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599524 A/chicken/Jiangxi/21481/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599517 A/chicken/Jiangxi/20976/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599510 A/chicken/Jiangxi/20935/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599496 A/chicken/Jiangxi/20489/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599489 A/chicken/Jiangxi/20482/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599461 A/chicken/Jiangxi/20443/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599447 A/chicken/Jiangxi/19934/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599426 A/chicken/Jiangxi/18980/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599419 A/chicken/Jiangxi/18957/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599404 A/chicken/Jiangxi/18946/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI599397 A/chicken/Jiangxi/18922/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI594467 A/chicken/Jinan/4261/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI594460 A/chicken/Jinan/4225/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI589860 A/chicken/Jiangxi/18933/2013 (A/H10N8) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI584141 A/chicken/Jiangxi/S3581/2013 (A/H10N8) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI578052 A/chicken/Jiangxi/33583/2013 (A/H0) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI497526 A/environment/Jiangxi/00452/2013 (A/H9N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI736586 A/Anser fabalis/Anhui/L139/2014 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1478/1499 (98%) EPI691975 A/pigeon/Hubei/228/2012 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI691694 A/pigeon/Hubei/230/2012 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI602121 A/chicken/Jiangxi/18474/2013 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI602068 A/chicken/Jiangxi/19967/2013 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601876 A/chicken/Jiangxi/36242/2013 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601846 A/chicken/Jiangxi/31860/2013 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601798 A/chicken/Jiangxi/36257/2013 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601531 A/chicken/Jiangxi/23772/2013 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601357 A/chicken/Jiangxi/1226/2014 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601326 A/chicken/Jiangxi/1255/2014 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI601316 A/chicken/Jiangxi/1250/2014 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI600289 A/chicken/Jiangxi/1270/2014 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI600111 A/chicken/Jiangxi/21978/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599764 A/chicken/Jiangxi/33542/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599700 A/chicken/Jiangxi/23259/2013 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599685 A/chicken/Jiangxi/1204/2014 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599580 A/chicken/Jiangxi/29099/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599566 A/chicken/Jiangxi/29075/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599552 A/chicken/Jiangxi/25970/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1477/1498 (98%) EPI599545 A/chicken/Jiangxi/23797/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599503 A/chicken/Jiangxi/20506/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599482 A/chicken/Jiangxi/20478/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599468 A/chicken/Jiangxi/20446/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599412 A/chicken/Jiangxi/18952/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599390 A/chicken/Jiangxi/18913/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599376 A/duck/Jiangxi/36505/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599190 A/chicken/Jiangxi/19960/2013 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI599182 A/chicken/Jiangxi/19924/2013 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI596883 A/silkie chicken/Dongguan/959/2014 (A/H0) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI584149 A/chicken/Jiangxi/S3612/2013 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI578044 A/chicken/Jiangxi/33552/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530517 A/Environment/Jiangxi/20934/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530463 A/Environment/Jiangxi/03470/2013 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530457 A/Environment/Jiangxi/03365/2014 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530451 A/Environment/Jiangxi/03355/2014 (A/H9N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530419 A/Environment/Jiangxi/10721/2014 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530403 A/Environment/Jiangxi/03489/2013 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI530379 A/Environment/Jiangxi/03366/2013 (A/H10N8) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%)

Align Segment-ID Name Score E-Value Identity EPI872954 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI681080 A/pigeon/Zhejiang/727044/2014 (A/H9N2) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%) EPI681079 A/pigeon/Zhejiang/77037/2014 (A/H9N2) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%) EPI683235 A/duck/Wenzhou/YHQL64/2014 (A/H9N2) segment 3 (PA) 3812.6 0.000000e+00 2122/2151 (98%) EPI681091 A/chicken/Zhejiang/925117/2014 (A/H9N2) segment 3 (PA) 3812.6 0.000000e+00 2122/2151 (98%) EPI838075 A/chicken/Zhejiang/SIC40/2015 (A/H9N2) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%) EPI627509 A/Environment/Jiangsu/98337/2014 (A/H7N9) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%) EPI566135 A/Jiangsu/06307/2014 (A/H7N9) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%) EPI846038 A/chicken/Jiangsu/JS4539/2014 (A/H9N2) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%) EPI627149 A/Zhejiang/34/2014 (A/H7N9) segment 3 (PA) 3790.4 0.000000e+00 2118/2151 (98%) EPI599272 A/chicken/Jiangxi/19436/2013 (A/H9N2) segment 3 (PA) 3790.4 0.000000e+00 2118/2151 (98%) EPI681089 A/chicken/Zhejiang/925018/2014 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI652791 A/chicken/Qingdao/011/2014 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI652790 A/chicken/Qingdao/010/2014 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI599274 A/chicken/Jiangxi/19934/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI599268 A/chicken/Jiangxi/18946/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI599266 A/chicken/Jiangxi/18913/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI599225 A/chicken/Jiangxi/21481/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI599220 A/chicken/Jiangxi/20489/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI598714 A/chicken/Jiangxi/36266/2013 (A/H0) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI598458 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI598452 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI598441 A/chicken/Jiangxi/17913/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI598347 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI568385 A/chicken/Jiangxi/19912/2013 (A/H0) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI683242 A/chicken/Wenzhou/RAQL01/2015 (A/H7N9) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI683241 A/chicken/Wenzhou/RAQL18/2015 (A/H7N9) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI652789 A/chicken/Qingdao/009/2014 (A/H9N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI652787 A/chicken/Qingdao/007/2014 (A/H9N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI628556 A/Anhui/40094/2015 (A/H7N9) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI628404 A/environment/Jiangsu/03174/2013 (A/H7N9) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI628020 A/Environment/Jiangsu/09386/2013 (A/H7N9) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI599278 A/chicken/Jiangxi/20457/2013 (A/H9N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI599276 A/chicken/Jiangxi/20443/2013 (A/H9N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI599202 A/chicken/Jiangxi/19960/2013 (A/H10N8) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI599196 A/chicken/Jiangxi/18933/2013 (A/H10N8) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI599062 A/environment/Jiangxi/36468/2013 (A/H0) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI598694 A/chicken/Jiangxi/31860/2013 (A/H0) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI598659 A/chicken/Jiangxi/18474/2013 (A/H0) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI598466 A/chicken/Jiangxi/19898/2013 (A/H9N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI577183 A/chicken/Suzhou/4960/2013 (A/H9N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI568453 A/chicken/Jiangxi/23241/2013 (A/H0) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI568452 A/chicken/Jiangxi/1287/2014 (A/H0) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI568443 A/chicken/Jiangxi/23252/2013 (A/H10N8) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI568442 A/chicken/Jiangxi/1204/2014 (A/H10N8) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI568383 A/chicken/Jiangxi/18926/2013 (A/H0) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI683240 A/duck/Wenzhou/RAQL10/2015 (A/H7N9) segment 3 (PA) 3775.7 0.000000e+00 2115/2151 (98%) EPI599271 A/chicken/Jiangxi/18980/2013 (A/H9N2) segment 3 (PA) 3775.7 0.000000e+00 2115/2151 (98%) EPI729794 A/chicken/Shanghai/15/2015 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2116/2152 (98%) EPI681086 A/chicken/Zhejiang/727063/2014 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI652786 A/chicken/Qingdao/006/2014 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI627141 A/Zhejiang/35/2014 (A/H7N9) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599275 A/chicken/Jiangxi/19981/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599273 A/chicken/Jiangxi/19448/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599270 A/chicken/Jiangxi/18957/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599269 A/chicken/Jiangxi/18952/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599267 A/chicken/Jiangxi/18922/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599226 A/chicken/Jiangxi/21984/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599224 A/chicken/Jiangxi/20976/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599223 A/chicken/Jiangxi/20482/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599207 A/chicken/Jiangxi/23773/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599193 A/chicken/Jiangxi/18399/2013 (A/H10N8) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599052 A/chicken/Jiangxi/1247/2014 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI598795 A/chicken/Jiangxi/36240/2013 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI598791 A/chicken/Jiangxi/20420/2013 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI598622 A/chicken/Jiangxi/1279/2014 (A/H10N8) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI598442 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI598440 A/chicken/Jiangxi/17403/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI577891 A/chicken/Jiangxi/33583/2013 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI573371 A/chicken/Shanghai/015/2014 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI568448 A/chicken/Jiangxi/28113/2013 (A/H10N8) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI568445 A/chicken/Jiangxi/23274/2013 (A/H10N8) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI568434 A/chicken/Jiangxi/29099/2013 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI568401 A/chicken/Jiangxi/23786/2013 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI568386 A/chicken/Jiangxi/19967/2013 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI568384 A/chicken/Jiangxi/18955/2013 (A/H0) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI530454 A/Environment/Jiangxi/03355/2014 (A/H9N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI599054 A/chicken/Jiangxi/1255/2014 (A/H0) segment 3 (PA) 3772.0 0.000000e+00 2114/2151 (98%) EPI683236 A/chicken/Taizhou/TZJF05/2015 (A/H9N2) segment 3 (PA) 3770.1 0.000000e+00 2114/2151 (98%) EPI599060 A/chicken/Jiangxi/36291/2013 (A/H0) segment 3 (PA) 3770.1 0.000000e+00 2114/2151 (98%) EPI838045 A/chicken/Fujian/SIC16/2014 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI729793 A/chicken/Shanghai/06/2015 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI652799 A/chicken/Qingdao/019/2014 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI652788 A/chicken/Qingdao/008/2014 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI627029 A/Zhejiang/6/2015 (A/H7N9) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI599277 A/chicken/Jiangxi/20446/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI599222 A/chicken/Jiangxi/20935/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI599210 A/chicken/Jiangxi/23797/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI599208 A/chicken/Jiangxi/25970/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI599107 A/chicken/Jiangxi/36263/2013 (A/H0) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598796 A/chicken/Jiangxi/36247/2013 (A/H0) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598697 A/chicken/Jiangxi/36242/2013 (A/H0) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598693 A/chicken/Jiangxi/23273/2013 (A/H0) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598660 A/chicken/Jiangxi/19982/2013 (A/H0) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598647 A/duck/Jiangxi/36489/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598646 A/duck/Jiangxi/36487/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598645 A/duck/Jiangxi/36485/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598623 A/chicken/Jiangxi/3152/2014 (A/H10N8) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI598492 A/chicken/Jiangxi/21468/2013 (A/H9N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI577376 A/silkie chicken/Dongguan/959/2014 (A/H0) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%)

Align Segment-ID Name Score E-Value Identity EPI872956 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI844500 A/environment/Zhongshan/ZS201601/2016 (A/H9N2) segment 2 (PB1) 4087.8 0.000000e+00 2253/2273 (99%) EPI874336 A/Hong Kong/VB17002884/2017 (A/H7N9) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI535129 A/Jiaxing/20/2014 (A/H7N9) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI627591 A/Zhejiang/13/2014 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI576593 A/chicken/Guangdong/SD1/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI576592 A/chicken/Guangdong/G3/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI576591 A/chicken/Guangdong/G2/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI568751 A/goose/Jiangsu/1027/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI545787 A/chicken/Suzhou/040201H/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI542310 A/Shanghai/MH01/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI509077 A/Beijing/02/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI508925 A/tree sparrow/Shanghai/01/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI504720 A/Shanghai/5190T/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI498096 A/Xuzhou/1/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI497916 A/Nanjing/7/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI497908 A/Suzhou/5/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI497871 A/Wuxi/4/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI469192 A/chicken/Rizhao/515/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI467303 A/Wuxi/1/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI460773 A/Nanjing/5/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457883 A/chicken/Guangdong/SD641/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457875 A/chicken/Jiangsu/S002/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457851 A/chicken/Jiangsu/SC537/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457779 A/chicken/Shanghai/S1410/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457747 A/chicken/Zhejiang/SD033/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457675 A/environment/Shanghai/S1436/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457659 A/environment/Shanghai/S1438/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457643 A/homing pigeon/Jiangsu/SD184/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI457627 A/pigeon/Shanghai/S1423/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI447960 A/Shanghai/3/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI447950 A/Shanghai/4/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI447876 A/Jiangsu/02/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI447777 A/Shanghai/14/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI447762 A/Shanghai/8/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI447636 A/Anhui/03/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI440691 A/Environment/Shanghai/S1088/2013 (A/H7N9) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%) EPI663470 A/pigeon/Wuxi/0405007/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI663469 A/duck/Wuxi/0405006/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI663465 A/chicken/Wuxi/04030201/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI663464 A/chicken/Wuxi/0405005/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636949 A/Anhui/1-YK_RG39/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636942 A/Anhui/1-YK_RG38/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636935 A/Anhui/1-YK_RG37/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636927 A/Anhui/1-YK_RG36/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636919 A/Anhui/1-YK_RG35/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636912 A/Anhui/1-YK_RG34/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636882 A/Anhui/1-YK_RG30/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636875 A/Anhui/1-YK_RG29/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636868 A/Anhui/1-YK_RG28/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636861 A/Anhui/1-YK_RG27/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636854 A/Anhui/1-YK_RG26/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636845 A/Anhui/1-YK_RG25/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636838 A/Anhui/1-YK_RG24/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636831 A/Anhui/1-YK_RG23/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636824 A/Anhui/1-YK_RG22/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636817 A/Anhui/1-YK_RG21/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636810 A/Anhui/1-YK_RG20/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636802 A/Anhui/1-YK_RG19/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636792 A/Anhui/1-YK_RG18/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636785 A/Anhui/1-YK_RG17/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636778 A/Anhui/1-YK_RG16/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636771 A/Anhui/1-YK_RG15/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636764 A/Anhui/1-YK_RG14/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636757 A/Anhui/1-YK_RG13/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636750 A/Anhui/1-YK_RG12/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636743 A/Anhui/1-YK_RG10/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636735 A/Anhui/1-YK_RG09/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636727 A/Anhui/1-YK_RG08/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636720 A/Anhui/1-YK_RG07/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636713 A/Anhui/1-YK_RG06/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636706 A/Anhui/1-YK_RG05/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636699 A/Anhui/1-YK_RG04/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636692 A/Anhui/1-YK_RG03/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636685 A/Anhui/1-YK_RG02/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI636678 A/Anhui/1-YK_RG01/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620197 A/Anhui/1-JCVI1_RG3/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620190 A/Anhui/1-JCVI1_RG2/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620183 A/Anhui/1-JCVI1_RG1/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620172 A/Anhui/1-BALF_RG9/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620165 A/Anhui/1-BALF_RG8/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620158 A/Anhui/1-BALF_RG7/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620151 A/Anhui/1-BALF_RG6/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620140 A/Anhui/1-BALF_RG19/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620133 A/Anhui/1-BALF_RG18/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620126 A/Anhui/1-BALF_RG17/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620123 A/Anhui/1-BALF_RG32/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620116 A/Anhui/1-BALF_RG31/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620109 A/Anhui/1-BALF_RG29/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620102 A/Anhui/1-BALF_RG21/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620097 A/Anhui/1-BALF_RG44/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620090 A/Anhui/1-BALF_RG43/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620083 A/Anhui/1-BALF_RG42/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620076 A/Anhui/1-BALF_RG41/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620069 A/Anhui/1-BALF_RG40/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620058 A/Anhui/1-BALF_RG1/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620051 A/Anhui/1-BALF_RG45/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620044 A/Anhui/1-BALF_RG5/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620037 A/Anhui/1-BALF_RG4/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%) EPI620030 A/Anhui/1-BALF_RG3/2013 (A/H7N9) segment 2 (PB1) 4028.7 0.000000e+00 2243/2274 (98%)

Align Segment-ID Name Score E-Value Identity EPI872955 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI578196 A/chicken/Dongguan/1674/2014 (A/H9N2) segment 1 (PB2) 4056.4 0.000000e+00 2253/2281 (98%) EPI601321 A/chicken/Jiangxi/1255/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI600087 A/chicken/Jiangxi/19898/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI600080 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI600052 A/chicken/Jiangxi/17403/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI599814 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI599500 A/chicken/Jiangxi/20506/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI599458 A/chicken/Jiangxi/20443/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI599430 A/chicken/Jiangxi/19436/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI599423 A/chicken/Jiangxi/18980/2013 (A/H9N2) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI593590 A/chicken/Jiangxi/18526/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI593568 A/chicken/Jiangxi/18523/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI593518 A/chicken/Jiangxi/18500/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI593502 A/chicken/Jiangxi/18491/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI593482 A/chicken/Jiangxi/18486/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI593420 A/chicken/Jiangxi/18466/2014 (A/H0) segment 1 (PB2) 4039.7 0.000000e+00 2250/2281 (98%) EPI623615 A/chicken/Hubei/2014 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI602117 A/chicken/Jiangxi/18474/2013 (A/H0) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI602083 A/chicken/Jiangxi/20471/2013 (A/H0) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI600101 A/chicken/Jiangxi/21468/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI600073 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599528 A/chicken/Jiangxi/21984/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599493 A/chicken/Jiangxi/20489/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599472 A/chicken/Jiangxi/20457/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599465 A/chicken/Jiangxi/20446/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599444 A/chicken/Jiangxi/19934/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599416 A/chicken/Jiangxi/18957/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599408 A/chicken/Jiangxi/18952/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599394 A/chicken/Jiangxi/18922/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI599387 A/chicken/Jiangxi/18913/2013 (A/H9N2) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI593443 A/chicken/Jiangxi/18470/2014 (A/H0) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI593394 A/chicken/Jiangxi/18035/2014 (A/H0) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI589864 A/chicken/Jiangxi/19924/2013 (A/H10N8) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI578056 A/chicken/Jiangxi/33621/2013 (A/H0) segment 1 (PB2) 4034.2 0.000000e+00 2249/2281 (98%) EPI837987 A/chicken/Sichuan/SIC36/2014 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI736582 A/Anser fabalis/Anhui/L139/2014 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI602064 A/chicken/Jiangxi/19967/2013 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601970 A/chicken/Jiangxi/1271/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601930 A/chicken/Jiangxi/25941/2013 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601920 A/chicken/Jiangxi/23273/2013 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601892 A/chicken/Jiangxi/1286/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601604 A/chicken/Jiangxi/1288/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601363 A/chicken/Jiangxi/1242/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601354 A/chicken/Jiangxi/1226/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601262 A/chicken/Jiangxi/1269/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI600108 A/chicken/Jiangxi/21978/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI600066 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599747 A/chicken/Jiangxi/31856/2013 (A/H10N8) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599521 A/chicken/Jiangxi/21481/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599514 A/chicken/Jiangxi/20976/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599507 A/chicken/Jiangxi/20935/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599486 A/chicken/Jiangxi/20482/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599479 A/chicken/Jiangxi/20478/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599437 A/chicken/Jiangxi/19448/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI599401 A/chicken/Jiangxi/18946/2013 (A/H9N2) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI593410 A/chicken/Jiangxi/18457/2014 (A/H0) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI537478 A/chicken/B15/Jiangxi/2014 (A/H10N8) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI537469 A/chicken/77/Jiangxi/2014 (A/H10N8) segment 1 (PB2) 4028.7 0.000000e+00 2248/2281 (98%) EPI601486 A/chicken/Jiangxi/36274/2013 (A/H0) segment 1 (PB2) 4025.0 0.000000e+00 2247/2281 (98%) EPI601332 A/chicken/Jiangxi/1257/2014 (A/H0) segment 1 (PB2) 4025.0 0.000000e+00 2247/2281 (98%) EPI683196 A/duck/Wuhan/WHYF14/2014 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI602461 A/chicken/Jiangxi/3152/2014 (A/H10N8) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI602354 A/duck/Jiangxi/36485/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI601804 A/chicken/Jiangxi/36266/2013 (A/H0) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI601593 A/chicken/Jiangxi/1218/2014 (A/H0) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI601024 A/chicken/Jiangxi/1289/2014 (A/H0) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI600293 A/chicken/Jiangxi/1279/2014 (A/H10N8) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI600279 A/chicken/Jiangxi/1232/2014 (A/H10N8) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI600094 A/chicken/Jiangxi/20927/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI600059 A/chicken/Jiangxi/17913/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI599786 A/chicken/Jiangxi/36226/2013 (A/H0) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI599733 A/chicken/Jiangxi/28563/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI599577 A/chicken/Jiangxi/29099/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI599451 A/chicken/Jiangxi/19981/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI593629 A/chicken/Jiangxi/19463/2014 (A/H0) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI593346 A/chicken/Shantou/4832/2014 (A/H7N9) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI591968 A/chicken/Suzhou/4833/2013 (A/H0) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI583824 A/chicken/Suzhou/4954/2013 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI557811 A/Anser fabalis/China/HuBS428/2014 (A/H9N2) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI530391 A/Environment/Jiangxi/03367/2013 (A/H10N8) segment 1 (PB2) 4023.1 0.000000e+00 2247/2281 (98%) EPI601871 A/chicken/Jiangxi/36242/2013 (A/H0) segment 1 (PB2) 4021.3 0.000000e+00 2246/2281 (98%) EPI601475 A/chicken/Jiangxi/36256/2013 (A/H0) segment 1 (PB2) 4021.3 0.000000e+00 2246/2281 (98%) EPI596740 A/chicken/Jiangxi/30801/2013 (A/H0) segment 1 (PB2) 4019.4 0.000000e+00 2246/2281 (98%) EPI601911 A/chicken/Jiangxi/23241/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601862 A/chicken/Jiangxi/36227/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601852 A/chicken/Jiangxi/36223/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601571 A/chicken/Jiangxi/1206/2014 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601543 A/chicken/Jiangxi/36240/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601535 A/chicken/Jiangxi/36225/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601301 A/chicken/Jiangxi/1247/2014 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI601211 A/chicken/Jiangxi/36293/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI599570 A/chicken/Jiangxi/29086/2013 (A/H9N2) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI599373 A/duck/Jiangxi/36505/2013 (A/H9N2) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI596731 A/chicken/Jiangxi/29132/2013 (A/H0) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI593353 A/chicken/Shantou/4833/2014 (A/H7N9) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI583817 A/chicken/Suzhou/4837/2013 (A/H9N2) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI583810 A/chicken/Suzhou/4822/2013 (A/H9N2) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI578065 A/chicken/Jiangxi/36277/2013 (A/H9N2) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%) EPI530485 A/Environment/Jiangxi/03501/2013 (A/H9N2) segment 1 (PB2) 4017.6 0.000000e+00 2246/2281 (98%)

Align Segment-ID Name Score E-Value Identity EPI872953 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI583836 A/chicken/Suzhou/4957/2013 (A/H9N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI578219 A/chicken/Dongguan/1693/2014 (A/H0) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI578201 A/chicken/Dongguan/1674/2014 (A/H9N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI838129 A/chicken/Fujian/SIC16/2014 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI623621 A/chicken/Hubei/2014 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI602131 A/chicken/Jiangxi/18926/2013 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI602123 A/chicken/Jiangxi/18474/2013 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI602081 A/chicken/Jiangxi/19982/2013 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI602070 A/chicken/Jiangxi/19967/2013 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI602062 A/chicken/Jiangxi/19912/2013 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI601359 A/chicken/Jiangxi/1226/2014 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI600106 A/chicken/Jiangxi/21468/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI600092 A/chicken/Jiangxi/19898/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI600085 A/chicken/Jiangxi/19407/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI600078 A/chicken/Jiangxi/18901/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI600071 A/chicken/Jiangxi/18445/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI600057 A/chicken/Jiangxi/17403/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599819 A/duck/Jiangxi/20147/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599540 A/chicken/Jiangxi/23773/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599526 A/chicken/Jiangxi/21481/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599498 A/chicken/Jiangxi/20489/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599477 A/chicken/Jiangxi/20457/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599449 A/chicken/Jiangxi/19934/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599392 A/chicken/Jiangxi/18913/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI599184 A/chicken/Jiangxi/19924/2013 (A/H10N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI593599 A/chicken/Jiangxi/18526/2014 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI593527 A/chicken/Jiangxi/18500/2014 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI593514 A/chicken/Jiangxi/18491/2014 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI591974 A/chicken/Suzhou/4833/2013 (A/H0) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI589862 A/chicken/Jiangxi/18933/2013 (A/H10N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI589854 A/chicken/Jiangxi/18399/2013 (A/H10N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI583829 A/chicken/Suzhou/4954/2013 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI557786 A/Anser fabalis/China/HuBS428/2014 (A/H9N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI652908 A/chicken/Qingdao/017/2014 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI602141 A/chicken/Jiangxi/18955/2013 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI601918 A/chicken/Jiangxi/23241/2013 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI601812 A/chicken/Jiangxi/36266/2013 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI601562 A/chicken/Jiangxi/36247/2013 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI601525 A/chicken/Jiangxi/20420/2013 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI601379 A/chicken/Jiangxi/1243/2014 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599777 A/chicken/Jiangxi/34609/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599766 A/chicken/Jiangxi/33542/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599702 A/chicken/Jiangxi/23259/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599561 A/chicken/Jiangxi/28601/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599547 A/chicken/Jiangxi/23797/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599505 A/chicken/Jiangxi/20506/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599484 A/chicken/Jiangxi/20478/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599470 A/chicken/Jiangxi/20446/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599456 A/chicken/Jiangxi/19981/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599428 A/chicken/Jiangxi/18980/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599421 A/chicken/Jiangxi/18957/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599414 A/chicken/Jiangxi/18952/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599406 A/chicken/Jiangxi/18946/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599399 A/chicken/Jiangxi/18922/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI599281 A/chicken/Jiangxi/19960/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI593431 A/chicken/Jiangxi/18466/2014 (A/H0) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI591945 A/chicken/Jiaxing/4376/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI584372 A/chicken/Jiangxi/S3735/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI583822 A/chicken/Suzhou/4837/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI578046 A/chicken/Jiangxi/33552/2013 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI572723 A/Jiangxi/1/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI530537 A/Jiangxi-Donghu/346-2/2013(H10N8) (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI530529 A/Jiangxi-Donghu/346-1/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI530495 A/Environment/Jiangxi/10623/2014 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI530445 A/Jiangxi/09037/2014 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI530397 A/Environment/Jiangxi/03413/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI497543 A/environment/Jiangxi/02899/2012 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI497530 A/environment/Jiangxi/02895/2012 (A/H9N2) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI497478 A/Jiangxi-Donghu/346/2013 (A/H10N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI838143 A/chicken/Guangdong/SIC18/2014 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI838124 A/chicken/Hubei/SIC3/2012 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI682980 A/duck/Wuhan/WHYF14/2014 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI680983 A/chicken/Zhejiang/3C19/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI664544 A/duck/Hunan/03.09 YYFQH0036-P/2015(Mixed) (A/H5N6) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601936 A/chicken/Jiangxi/25941/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601899 A/chicken/Jiangxi/1286/2014 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601879 A/chicken/Jiangxi/36242/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601869 A/chicken/Jiangxi/36227/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601859 A/chicken/Jiangxi/36223/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601839 A/chicken/Jiangxi/23273/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601541 A/chicken/Jiangxi/36225/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601351 A/chicken/Jiangxi/1225/2014 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601277 A/chicken/Jiangxi/3119/2014 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI601217 A/chicken/Jiangxi/36293/2013 (A/H0) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI600284 A/chicken/Jiangxi/1232/2014 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI600120 A/chicken/Jiangxi/36229/2013 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI600113 A/chicken/Jiangxi/21978/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI600099 A/chicken/Jiangxi/20927/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI600064 A/chicken/Jiangxi/17913/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599738 A/chicken/Jiangxi/28563/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599731 A/chicken/Jiangxi/28113/2013 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599723 A/chicken/Jiangxi/27604/2013 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599716 A/chicken/Jiangxi/27600/2013 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599709 A/chicken/Jiangxi/23274/2013 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599694 A/chicken/Jiangxi/23252/2013 (A/H10N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599533 A/chicken/Jiangxi/21984/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599519 A/chicken/Jiangxi/20976/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599512 A/chicken/Jiangxi/20935/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI599491 A/chicken/Jiangxi/20482/2013 (A/H9N2) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%)

Descriptions Align Segment-ID Name Score E-Value Identity EPI872957 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 6 (NA) 2582.7 0.000000e+00 1398/1398 (100%) EPI730494 A/Hong Kong/VB16049808/2016 (A/H7N9) segment 6 (NA) 2510.7 0.000000e+00 1385/1398 (99%) EPI626992 A/Guangdong/15SF082/2015 (A/H7N9) segment 6 (NA) 2510.7 0.000000e+00 1385/1398 (99%) EPI628647 A/Environment/Guangdong/21123/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1383/1398 (98%) EPI627208 A/Guangdong/15SF002/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1383/1398 (98%) EPI627056 A/Guangdong/15SF051/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1383/1398 (98%) EPI580365 A/Chicken/Guangdong/GZ068/2015 (A/H7N9) segment 6 (NA) 2499.6 0.000000e+00 1383/1398 (98%) EPI601943 A/chicken/Dongguan/1100/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597586 A/chicken/Dongguan/1421/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597455 A/chicken/Dongguan/1124/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597429 A/silkie chicken/Dongguan/986/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597423 A/silkie chicken/Dongguan/981/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597401 A/silkie chicken/Dongguan/979/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597169 A/chicken/Dongguan/1108/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597148 A/chicken/Dongguan/1670/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597134 A/silkie chicken/Dongguan/1644/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597079 A/chicken/Dongguan/1506/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597072 A/chicken/Dongguan/1505/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597035 A/silkie chicken/Dongguan/1451/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI597023 A/silkie chicken/Dongguan/1449/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI596921 A/chicken/Dongguan/1051/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI596886 A/silkie chicken/Dongguan/959/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI596805 A/chicken/Dongguan/536/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI596761 A/chicken/Dongguan/169/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593357 A/chicken/Shantou/4833/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593350 A/chicken/Shantou/4832/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593329 A/chicken/Shantou/4329/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593321 A/chicken/Shantou/4325/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593232 A/chicken/Shantou/2556/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593225 A/chicken/Shantou/2550/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI593197 A/chicken/Shantou/2537/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI592203 A/chicken/Dongguan/1096/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI592195 A/Shenzhen/SP139/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI592188 A/Shenzhen/SP126/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI578226 A/chicken/Dongguan/1697/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI578218 A/chicken/Dongguan/1693/2014 (A/H0) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI578141 A/silkie chicken/Dongguan/997/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI578114 A/chicken/Shantou/1554/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI578107 A/chicken/Shantou/1552/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI578100 A/chicken/Shantou/1550/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI509879 A/Hong Kong/4495/2014 (A/H7N9) segment 6 (NA) 2483.0 0.000000e+00 1380/1398 (98%) EPI628535 A/Environment/Guangdong/47403/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI628527 A/environment/Guangdong/25003/2013 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI628015 A/Guangdong/0075/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627983 A/Environmental/Guangdong/00329/2013 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627855 A/Hunan/26938/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627847 A/Hunan/26937/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627760 A/Guangdong-Guangzhou/XN00429/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627720 A/Guangdong-Guangzhou/XN08664/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627696 A/Guangdong-Guangzhou/XN13392/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627648 A/Guangdong-Guangzhou/XN08423/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627632 A/Guangdong-Guangzhou/XN14050/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627064 A/Guangdong/15SF053/2015 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI597535 A/chicken/Dongguan/1348/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI597448 A/chicken/Dongguan/1022/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI597183 A/chicken/Dongguan/191/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI597162 A/chicken/Dongguan/1091/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI597155 A/chicken/Dongguan/1673/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI597008 A/chicken/Dongguan/1424/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI596988 A/chicken/Dongguan/1374/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI593308 A/silkie chicken/Shantou/2056/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI593302 A/silkie chicken/Shantou/2054/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI593296 A/silkie chicken/Shantou/2050/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI593239 A/chicken/Shantou/2562/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI593204 A/chicken/Shantou/2538/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI580277 A/Chicken/Guangdong/DG479/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI578165 A/chicken/Dongguan/1445/2014 (A/H0) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI578121 A/chicken/Shantou/1556/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI566091 A/Guangdong/02496/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI516597 A/Hong Kong/5581/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI505123 A/silky_chicken/Hong_Kong/1772-3/2014 (A/H7N9) segment 6 (NA) 2477.5 0.000000e+00 1379/1398 (98%) EPI627664 A/Guangdong-Guangzhou/XN00509/2014 (A/H7N9) segment 6 (NA) 2475.6 0.000000e+00 1378/1398 (98%) EPI628711 A/Environment/Guangdong/22351/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI597545 A/chicken/Dongguan/1373/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI597521 A/chicken/Dongguan/1314/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI597504 A/chicken/Dongguan/1303/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI597056 A/silkie chicken/Dongguan/1473/2014 (A/H0) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI597048 A/chicken/Dongguan/1459/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI597041 A/chicken/Dongguan/1456/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI596974 A/chicken/Dongguan/1297/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI596856 A/chicken/Dongguan/856/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI593314 A/chicken/Shantou/3057/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI593211 A/chicken/Shantou/2539/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI583279 A/Shenzhen/SP48/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI580339 A/Environment/Guangdong/DG104/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI580329 A/Duck/Guangdong/DG103/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI580301 A/Chicken/Guangdong/DG593/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI580293 A/Chicken/Guangdong/DG592/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI580285 A/Duck/Guangdong/DG527/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI578207 A/chicken/Dongguan/1690/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI578187 A/chicken/Dongguan/1548/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI578010 A/Shenzhen/SP62/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI578003 A/Shenzhen/SP75/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI566035 A/Guangdong/15SF018/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI559416 A/Hong Kong/2550/2015 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI520863 A/Hong Kong/5731/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI516605 A/Hong Kong/8122430/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI507086 A/Hong Kong/3263/2014 (A/H7N9) segment 6 (NA) 2471.9 0.000000e+00 1378/1398 (98%) EPI578235 A/silkie chicken/Dongguan/1002/2014 (A/H0) segment 6 (NA) 2468.2 0.000000e+00 1377/1398 (98%) EPI656289 A/GD-10/2015/H7N9/2015-01-06 (A/H7N9) segment 6 (NA) 2466.4 0.000000e+00 1361/1374 (99%)

Align Segment-ID Name Score E-Value Identity EPI872958 A/Hong Kong/VB16189623/2016 (A/H7N9) segment 4 (HA) 3109.0 0.000000e+00 1683/1683 (100%) EPI730495 A/Hong Kong/VB16049808/2016 (A/H7N9) segment 4 (HA) 3020.4 0.000000e+00 1668/1684 (99%) EPI627209 A/Guangdong/15SF002/2015 (A/H7N9) segment 4 (HA) 3011.2 0.000000e+00 1665/1683 (98%) EPI580363 A/Chicken/Guangdong/GZ068/2015 (A/H7N9) segment 4 (HA) 2998.2 0.000000e+00 1663/1683 (98%) EPI628648 A/Environment/Guangdong/21123/2015 (A/H7N9) segment 4 (HA) 2992.7 0.000000e+00 1663/1684 (98%) EPI627057 A/Guangdong/15SF051/2015 (A/H7N9) segment 4 (HA) 2992.7 0.000000e+00 1662/1683 (98%) EPI626993 A/Guangdong/15SF082/2015 (A/H7N9) segment 4 (HA) 2992.7 0.000000e+00 1663/1684 (98%) EPI601940 A/chicken/Dongguan/1100/2014 (A/H0) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI597584 A/chicken/Dongguan/1421/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI597453 A/chicken/Dongguan/1124/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI597446 A/chicken/Dongguan/1022/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI597427 A/silkie chicken/Dongguan/986/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI597421 A/silkie chicken/Dongguan/981/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI597160 A/chicken/Dongguan/1091/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI592201 A/chicken/Dongguan/1096/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI592186 A/Shenzhen/SP126/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI509880 A/Hong Kong/4495/2014 (A/H7N9) segment 4 (HA) 2981.6 0.000000e+00 1660/1683 (98%) EPI627721 A/Guangdong-Guangzhou/XN08664/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI627665 A/Guangdong-Guangzhou/XN00509/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI627649 A/Guangdong-Guangzhou/XN08423/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI597399 A/silkie chicken/Dongguan/979/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI597181 A/chicken/Dongguan/191/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI597167 A/chicken/Dongguan/1108/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI597077 A/chicken/Dongguan/1506/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI596907 A/silkie chicken/Dongguan/988/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI596803 A/chicken/Dongguan/536/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI593237 A/chicken/Shantou/2562/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI593216 A/chicken/Shantou/2546/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI593202 A/chicken/Shantou/2538/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI593195 A/chicken/Shantou/2537/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI578139 A/silkie chicken/Dongguan/997/2014 (A/H7N9) segment 4 (HA) 2976.1 0.000000e+00 1659/1683 (98%) EPI628536 A/Environment/Guangdong/47403/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI597146 A/chicken/Dongguan/1670/2014 (A/H0) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI597132 A/silkie chicken/Dongguan/1644/2014 (A/H0) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI597067 A/chicken/Dongguan/1505/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI596881 A/silkie chicken/Dongguan/959/2014 (A/H0) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI596759 A/chicken/Dongguan/169/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI593230 A/chicken/Shantou/2556/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI593223 A/chicken/Shantou/2550/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578224 A/chicken/Dongguan/1697/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578213 A/chicken/Dongguan/1693/2014 (A/H0) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578205 A/chicken/Dongguan/1690/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578119 A/chicken/Shantou/1556/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578112 A/chicken/Shantou/1554/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578105 A/chicken/Shantou/1552/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI578098 A/chicken/Shantou/1550/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI516606 A/Hong Kong/8122430/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI516598 A/Hong Kong/5581/2014 (A/H7N9) segment 4 (HA) 2970.5 0.000000e+00 1658/1683 (98%) EPI627761 A/Guangdong-Guangzhou/XN00429/2014 (A/H7N9) segment 4 (HA) 2966.8 0.000000e+00 1656/1683 (98%) EPI627856 A/Hunan/26938/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI627848 A/Hunan/26937/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI627689 A/Guangdong-Guangzhou/XN15122/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI627625 A/Guangdong-Guangzhou/XN14670/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI597033 A/silkie chicken/Dongguan/1451/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI593306 A/silkie chicken/Shantou/2056/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI593300 A/silkie chicken/Shantou/2054/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI593294 A/silkie chicken/Shantou/2050/2014 (A/H7N9) segment 4 (HA) 2965.0 0.000000e+00 1657/1683 (98%) EPI656282 A/GD-2/2015/H7N9/2015-01-06 (A/H7N9) segment 4 (HA) 2961.3 0.000000e+00 1637/1654 (98%) EPI597021 A/silkie chicken/Dongguan/1449/2014 (A/H0) segment 4 (HA) 2959.5 0.000000e+00 1654/1683 (98%) EPI593312 A/chicken/Shantou/3057/2014 (A/H7N9) segment 4 (HA) 2959.5 0.000000e+00 1656/1683 (98%) EPI593209 A/chicken/Shantou/2539/2014 (A/H7N9) segment 4 (HA) 2959.5 0.000000e+00 1656/1683 (98%) EPI520864 A/Hong Kong/5731/2014 (A/H7N9) segment 4 (HA) 2959.5 0.000000e+00 1656/1683 (98%) EPI656330 A/GD-44/2015/H7N9/2015-01-19 (A/H7N9) segment 4 (HA) 2955.8 0.000000e+00 1636/1654 (98%) EPI656290 A/GD-10/2015/H7N9/2015-01-06 (A/H7N9) segment 4 (HA) 2955.8 0.000000e+00 1636/1654 (98%) EPI596919 A/chicken/Dongguan/1051/2014 (A/H7N9) segment 4 (HA) 2955.8 0.000000e+00 1653/1683 (98%) EPI627633 A/Guangdong-Guangzhou/XN14050/2014 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI627273 A/Guangdong/15SF001/2015 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI627201 A/Guangdong/15SF017/2015 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1656/1684 (98%) EPI592193 A/Shenzhen/SP139/2014 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI542311 A/Shanghai/MH01/2013 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI467305 A/Wuxi/1/2013 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI447625 A/Jiangsu/07/2013 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI447601 A/Jiangsu/02/2013 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI443025 A/Shanghai/4/2013 (A/H7N9) segment 4 (HA) 2953.9 0.000000e+00 1655/1683 (98%) EPI708036 A/chicken/Guangdong/G1392/2014 (A/H7N9) segment 4 (HA) 2950.2 0.000000e+00 1647/1672 (98%) EPI663440 A/duck/Wuxi/0405006/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI638039 A/Anhui/1-YK_RG193/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI638032 A/Anhui/1-YK_RG192/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI638025 A/Anhui/1-YK_RG191/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI638018 A/Anhui/1-YK_RG190/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI638011 A/Anhui/1-YK_RG189/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI638004 A/Anhui/1-YK_RG188/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637997 A/Anhui/1-YK_RG187/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637990 A/Anhui/1-YK_RG186/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637983 A/Anhui/1-YK_RG185/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637976 A/Anhui/1-YK_RG184/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637969 A/Anhui/1-YK_RG183/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637962 A/Anhui/1-YK_RG182/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637955 A/Anhui/1-YK_RG181/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637948 A/Anhui/1-YK_RG180/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637934 A/Anhui/1-YK_RG178/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI637829 A/Anhui/1-YK_RG162/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636840 A/Anhui/1-YK_RG25/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636833 A/Anhui/1-YK_RG24/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636826 A/Anhui/1-YK_RG23/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636819 A/Anhui/1-YK_RG22/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636812 A/Anhui/1-YK_RG21/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636804 A/Anhui/1-YK_RG20/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636794 A/Anhui/1-YK_RG19/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%) EPI636787 A/Anhui/1-YK_RG18/2013 (A/H7N9) segment 4 (HA) 2948.4 0.000000e+00 1654/1683 (98%)

Isolate name: A/Hong Kong/VB16189623/2016 Isolate ID: EPI_ISL_240520 Passage details/history: Original Type: A / H7N9 Lineage: Sample information Collection date: 2016-12-28 Host Human Additional host information: Zip code: Patient status: In-patient Last vaccinated: In-vivo pathogenicity test: Location: Hong Kong (SAR) Additional location information: Patient age: 70 Year(s) Gender: Male Outbreak: Treatment: Specimen source: Sputum Institute information Originating lab: Public Health Laboratory Services Branch, Centre for Health Protection Sample ID given by the sample provider: Address: Public Health Laboratory Services Branch, Centre for Health Protection Virology Division Kowloon Hong Kong Hong Kong (SAR) Submitting lab: Public Health Laboratory Services Branch, Centre for Health Protection Sample ID given by the submitting laboratory: VB16189623 Authors: Mak,G.C.; Lo,J.Y.C. Address: Public Health Laboratory Services Branch, Centre for Health Protection Virology Division Kowloon Hong Kong Hong Kong (SAR) Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/Hong Kong/VB16189623/2016_s1 2280 EPI872955 PB1 A/Hong Kong/VB16189623/2016_s2 2274 EPI872956 PA A/Hong Kong/VB16189623/2016_s3 2151 EPI872954 HA A/Hong Kong/VB16189623/2016_s4 1683 EPI872958 NP A/Hong Kong/VB16189623/2016_s5 1497 EPI872951 NA A/Hong Kong/VB16189623/2016_s6 1398 EPI872957 MP A/Hong Kong/VB16189623/2016_s7 982 EPI872953 NS A/Hong Kong/VB16189623/2016_s8 838 EPI872952 Submitter information Submitter: Mak, Gannon Submission Date: 2017-01-04 Last modifier: Mak, Gannon Last modified: 2017-01-04 Address: Public Health Laboratory Services Branch, Centre for Health Protection Virology Division Kowloon Hong Kong

CHP has released full H7N9 sequences (at GISAID) from 70M case in Hong Kong, A/Hong Kong/VB16189623/2016

Sun Jan 15, 2017 | 12:48pm EST Uganda detects bird flu in wild, domestic birds Uganda's ministry for agriculture said on Sunday it had detected bird flu in two locations, one affecting wild birds and another hitting domestic birds, but it did not say whether it was a strain that has spread across Europe and the Middle East. The H5N8 strain, which is deadly for poultry but has not been found in humans, has spread in Europe and the Middle East since late last year, leading to the slaughter of hundreds of thousands of farmed birds and the confinement of flocks indoors. China has reported human infections of the H7N9 strain of the virus, resulting in fatalities. Uganda's Agriculture, Industry and Fisheries Ministry said in a statement that in-country tests had identified "the highly pathogenic avian influenza (HPAI), that affects both humans and animals and which causes (a) high number of deaths in both species." But the statement did not indentify the strain. Fishermen on Jan. 2 had reported the "mass death of wild birds" on the shores of Lake Victoria, near Entebbe, which lies near the capital. Tests proved positive. On Jan. 13 five domestic ducks and a hen in Masaka, to the west of Kampala, were also found to be infected. (Writing by Edmund Blair; Editing by Greg Mahlich) http://www.reuters.com/article/us-health-birdflu-uganda-idUSKBN14Z0SZ?feedType=RSS&feedName=environmentNews&utm_source=dlvr.it&utm_medium=twitter

Sun Jan 15, 2017 | 12:48pm EST Uganda detects bird flu in wild, domestic birds Uganda's ministry for agriculture said on Sunday it had detected bird flu in two locations, one affecting wild birds and another hitting domestic birds, but it did not say whether it was a strain that has spread across Europe and the Middle East. The H5N8 strain, which is deadly for poultry but has not been found in humans, has spread in Europe and the Middle East since late last year, leading to the slaughter of hundreds of thousands of farmed birds and the confinement of flocks indoors. China has reported human infections of the H7N9 strain of the virus, resulting in fatalities. Uganda's Agriculture, Industry and Fisheries Ministry said in a statement that in-country tests had identified "the highly pathogenic avian influenza (HPAI), that affects both humans and animals and which causes (a) high number of deaths in both species." But the statement did not indentify the strain. Fishermen on Jan. 2 had reported the "mass death of wild birds" on the shores of Lake Victoria, near Entebbe, which lies near the capital. Tests proved positive. On Jan. 13 five domestic ducks and a hen in Masaka, to the west of Kampala, were also found to be infected. (Writing by Edmund Blair; Editing by Greg Mahlich) http://www.reuters.com/article/us-health-birdflu-uganda-idUSKBN14Z0SZ?feedType=RSS&feedName=environmentNews&utm_source=dlvr.it&utm_medium=twitter

anuary 15, 2017 Outbreak of the Highly Pathogenic Avian Influenza in wild and domestic birds Speech for the Honorable Minister of Agriculture Animal Industry and Fisheries during communication of outbreak of the Highly Pathogenic Avian Influenza (HPAI) outbreak in wild and domestic bird in Uganda 15th January 2017. Ladies and Gentlemen I am honoured to have this opportunity to inform you of an eminent catastrophe faces the people of our country. My Ministry was on the 2nd January 2017 informed by Uganda Wildlife Education Center (UWEC) of a report of mass death of wild birds seen by fishermen at Lutembe beach at the shores of Lake Victoria near Entebbe. Another report was also received on 13th January 2017 from Masaka district. UWEC communicated to Uganda Government Chemist and the Commissioner of Animal Health (CAH) of my Ministry. My Ministry immediately sent a team to investigate the mass bird death together with a team from government chemist and UWEC. The specimen unfortunately have turned positive to the very serious disease The Highly Pathogenic Avian Influenza (HPAI), that affects both humans and animals and which causes high number of deaths in both species. Things that the public needs to immediately know are: • The Highly Pathogenic Avian Influenza (HPAI) is commonly referred to as AVIAN FLU or AVIAN INFLUENZA; • This is the first time AVIAN FLU or AVIAN INFLUENZA breaks out in Uganda; • HPAI affects humans, birds and animals; • However, the species that are so far affected are white winged black tern birds and domestic ducks and chicken; • 7 specimen of the white winged black tern birds have been collected from Lutembe beach and all the 7 are positive for the deadly disease; • 2 specimen of feaces picked from the ground just dropped by birds flying away from Lutembe beach were also positive for HPAI; • 5 domestic duck and 1 hen specimen were brought in from Masaka district were too are positive to HPAI; • Diagnosis was undertaken by the National Animal Disease Diagnostics and Epidemiology Centre (NADDEC) MAAIF; • Diagnosis was confirmed by the Uganda Virus Research Institute (UVRI) MOH; • There is a National Task Force (NTF) which is multi disciplinary with human and animal experts from government, agencies and NGO that is usually called upon to handle outbreaks of diseases that affect both humans and animals. The NTF is anchored at OPM and is co-chaired by MAAIF and MOH; • The NTF has experience and has competence to handle such outbreaks, and therefore the situation is under control; Advice to the people: • Report any cases of mass birds, animal, both domestic and wild to any government authority nearest to you, but especially the veterinary authorities; • Report any cases of sickness or death of humans to the nearest human health facility (Hospital, clinic) or to the MOH; • Bird owners MUST house them, avoiding interaction between domestic and wild birds and animals; • People MUST not touch or eat wild birds or other wild animals that are found dead, they should instead report to the nearest veterinary authority. What my Ministry is going to do • Together with MOH, UWEC, UWA, Districts and all other stakeholders will; o Immediately inform the public to avert any human catastrophe from human infections; o Calm the population through providing accurate information and facts about HPAI; o Intensify meetings and actions of the National Task Force on disease; • Continues with further investigations and prevention of spread of HPAI to domestic animals and possibly to humans; • Continue providing information to the public; • Plan to control HPAI in domestic animals and humans. Dear Ladies and Gentlemen, This country is faced by looming catastrophe of an outbreak of HPAI currently in wild birds and has already affected some domestic birds in Masaka district; I am calling up on all of us to actively participate by being alert of the situation and sharing this information. I also ask you to follow instructions as provided by professionals to save our people, poultry, animals and wild life. TOGETHER WE WIN I SAY ALL THIS FOR GOD AND MY COUTRY https://ugandamediacentreblog.wordpress.com/2017/01/15/outbreak-of-the-highly-pathogenic-avian-influenza-in-wild-and-domestic-birds/

January 15, 2017 Outbreak of the Highly Pathogenic Avian Influenza in wild and domestic birds Speech for the Honorable Minister of Agriculture Animal Industry and Fisheries during communication of outbreak of the Highly Pathogenic Avian Influenza (HPAI) outbreak in wild and domestic bird in Uganda 15th January 2017. Ladies and Gentlemen I am honoured to have this opportunity to inform you of an eminent catastrophe faces the people of our country. My Ministry was on the 2nd January 2017 informed by Uganda Wildlife Education Center (UWEC) of a report of mass death of wild birds seen by fishermen at Lutembe beach at the shores of Lake Victoria near Entebbe. Another report was also received on 13th January 2017 from Masaka district. UWEC communicated to Uganda Government Chemist and the Commissioner of Animal Health (CAH) of my Ministry. My Ministry immediately sent a team to investigate the mass bird death together with a team from government chemist and UWEC. The specimen unfortunately have turned positive to the very serious disease The Highly Pathogenic Avian Influenza (HPAI), that affects both humans and animals and which causes high number of deaths in both species. Things that the public needs to immediately know are: • The Highly Pathogenic Avian Influenza (HPAI) is commonly referred to as AVIAN FLU or AVIAN INFLUENZA; • This is the first time AVIAN FLU or AVIAN INFLUENZA breaks out in Uganda; • HPAI affects humans, birds and animals; • However, the species that are so far affected are white winged black tern birds and domestic ducks and chicken; • 7 specimen of the white winged black tern birds have been collected from Lutembe beach and all the 7 are positive for the deadly disease; • 2 specimen of feaces picked from the ground just dropped by birds flying away from Lutembe beach were also positive for HPAI; • 5 domestic duck and 1 hen specimen were brought in from Masaka district were too are positive to HPAI; • Diagnosis was undertaken by the National Animal Disease Diagnostics and Epidemiology Centre (NADDEC) MAAIF; • Diagnosis was confirmed by the Uganda Virus Research Institute (UVRI) MOH; • There is a National Task Force (NTF) which is multi disciplinary with human and animal experts from government, agencies and NGO that is usually called upon to handle outbreaks of diseases that affect both humans and animals. The NTF is anchored at OPM and is co-chaired by MAAIF and MOH; • The NTF has experience and has competence to handle such outbreaks, and therefore the situation is under control; Advice to the people: • Report any cases of mass birds, animal, both domestic and wild to any government authority nearest to you, but especially the veterinary authorities; • Report any cases of sickness or death of humans to the nearest human health facility (Hospital, clinic) or to the MOH; • Bird owners MUST house them, avoiding interaction between domestic and wild birds and animals; • People MUST not touch or eat wild birds or other wild animals that are found dead, they should instead report to the nearest veterinary authority. What my Ministry is going to do • Together with MOH, UWEC, UWA, Districts and all other stakeholders will; o Immediately inform the public to avert any human catastrophe from human infections; o Calm the population through providing accurate information and facts about HPAI; o Intensify meetings and actions of the National Task Force on disease; • Continues with further investigations and prevention of spread of HPAI to domestic animals and possibly to humans; • Continue providing information to the public; • Plan to control HPAI in domestic animals and humans. Dear Ladies and Gentlemen, This country is faced by looming catastrophe of an outbreak of HPAI currently in wild birds and has already affected some domestic birds in Masaka district; I am calling up on all of us to actively participate by being alert of the situation and sharing this information. I also ask you to follow instructions as provided by professionals to save our people, poultry, animals and wild life. TOGETHER WE WIN I SAY ALL THIS FOR GOD AND MY COUTRY https://ugandamediacentreblog.wordpress.com/2017/01/15/outbreak-of-the-highly-pathogenic-avian-influenza-in-wild-and-domestic-birds/

Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1aNOepBDPUd0zdRnQE1UbSW8djsk&ll=-0.317722030119445%2C31.732640757519448&z=13