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LOCUS KU926326 231 bp RNA linear VRL 17-MAR-2016 DEFINITION Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds. ACCESSION KU926326 VERSION KU926326.1 GI:1006592949 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 231) AUTHORS Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M., Mendelson,E. and Schwartz,E. TITLE Zika virus in Israeli travelers: Asia, Central and South America JOURNAL Unpublished REFERENCE 2 (bases 1 to 231) AUTHORS Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M., Mendelson,E. and Schwartz,E. TITLE Direct Submission JOURNAL Submitted (16-MAR-2016) Central Virology Laboratory, Ministry of Health, Sheba Way, Ramat-Gan 5262100, Israel COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..231 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika 2235 Israel ex Colombia 2015" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Israel" /collection_date="27-Dec-2015"

Israel MoH releases partial Zika sequence from Israel traveler infected in Colombia (Zika 2235 collected Dec 27 2015) http://www.ncbi.nlm.nih.gov/nuccore/KU926326

Newborn with microcephaly becomes the first fatality of zika in Panama NEWS | LATIN AMERICAGetty ImagesSaturday, March 19, 2016Share on:A newborn with microcephaly associated zika became the first death from the virus in Panama, reported Saturday the health authorities. "There was no history that she (the mother) was sick , " he acknowledged at a press conference director health Itza Barahona de Mosca. the baby was born Thursday at a hospital in Panama city with a "severe malformation incompatible with life" had been detected a few days before. Interested: US scientists locate in mice neurons that tell them when to stop eating Newborn barely survived four hours and the first analysis of umbilical cord have shown that was infected with zika, although evidence of the mother have been negative, he said Barahona de Mosca. "the fact that the child is infected means that probably the mother was at some point during pregnancy, although it should not have symptoms, since 80% of those infected are asymptomatic , " said the official. the woman according to the calculations of the authorities, it had become infected in August 2015, which shows that "the virus was circulating in the country before we detect the outbreak" last December, recognized the director of the Ministry of Health. "it was matter of time before there was any birth affected by microcephaly or neurological disorder in our country , "he admitted. at present, there are 134 cases of zika in the country, among which is a pregnant whose fetus has no symptoms of microcephaly. also, 2 people suffering from Guillain-Barre syndrome, with mild symptoms, according to the Panamanian ministry. "for zika no vaccines, no medicines. The best way to avoid this is to eliminate mosquito breeding sites , "Barahona de Mosca recommended. The zika transmits the Aedes aegypti mosquito, which also transmits dengue fever chikungunya and in other countries there is also evidence of transmission through sex. http://www.ntn24.com/noticia/recien-nacido-con-microcefalia-se-convierte-en-la-primera-victima-mortal-del-zika-en-panama-93869?utm_source=dlvr.it&utm_medium=twitter

Panama reports Zika baby brain caseBy Reuters, Citizen DigitalPublished on 19 March 2016 Panama has registered a baby born with a brain disorder believed linked to the Zika virus, in what is thought to be the first such case outside Brazil in the current outbreak. Traces of the mosquito-born virus were found in the baby’s umbilical cord. Also Read: Italy rescues 910 boat migrants The baby had been born with an underdeveloped brain, a condition known as microcephaly, which health experts suspect is linked to the virus. Brazil suspects most of its 860 cases of microcephaly are related to Zika. The Panamanian baby’s mother had not reported any symptoms of Zika during her pregnancy. Her baby died four hours after being born. The World Health Organization (WHO) has declared a global public health emergency over the possible connection between the mosquito-born virus and microcephaly. The current Zika outbreak began almost a year ago in Brazil. Microcephaly cases have been centred in north-east Brazil, but the outbreak has affected people in more than 20 countries in the Americas. Some governments have advised women to delay getting pregnant, but before now no infants with microcephaly have tested positive for Zika outside Brazil in the current outbreak. https://citizentv.co.ke/news/panama-reports-zika-baby-brain-case-118944/ Some cases of the brain condition were reported in an outbreak in French Polynesia in 2013.

Sequence map update https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en

Sequence map updated https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1852518525100%0.0100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1850718507100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1850718507100%0.099%KU761564.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1839318393100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1839318393100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1839018390100%0.099%KU365778.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1838118381100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1838118381100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1838118381100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1837518375100%0.099%KU365777.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1836318363100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1835718357100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1834818348100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1833918339100%0.099%KU729218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833018330100%0.099%KU647676.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1832718327100%0.099%KU820897.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1832718327100%0.099%KU501217.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183231832399%0.099%KU497555.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1832118321100%0.099%KU729217.2Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1832118321100%0.099%KU501216.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1831218312100%0.099%KU922960.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1831218312100%0.099%KU527068.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1830918309100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1829118291100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1828918289100%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1825418254100%0.099%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1816818168100%0.099%KU744693.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1814618146100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1801518015100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177081770899%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176671766798%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1755317553100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1741617416100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1330813308100%0.089%KU720415.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1330213302100%0.089%KF268949.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133021330299%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1329713297100%0.089%KF383115.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1329313293100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1328613286100%0.089%LC002520.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1328613286100%0.089%KF268950.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328113281100%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1327913279100%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1326613266100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132411324199%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1322713227100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1319613196100%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131741317499%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1296713035100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128791287997%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108991089997%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4980498027%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4953495327%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4637463725%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4628462825%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3449344918%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3247324717%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2879422995%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2686268614%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2057205711%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2012201211%0.099%KU179098.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174317439%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds173917399%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds173717379%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173617369%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173617369%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173617369%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173417349%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159315938%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141114117%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds137913797%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134213427%0.098%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds133713377%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1310131010%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds123612366%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232294.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121312136%0.099%KU232292.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120412046%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118011806%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113911396%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds106810688%0.088%KF270886.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101210125%0.099%KU867812.1

Zika sequence map updated https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en

LOCUS KU820898 10272 bp RNA linear VRL 15-MAR-2016 DEFINITION Zika virus isolate GZ01 polyprotein gene, complete cds. ACCESSION KU820898 VERSION KU820898.1 GI:1001904408 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10272) AUTHORS Deng,Y.-Q., Li,X.-F., Wang,H.-J., Ye,Q., Han,J.-F., Zhang,N.-N., Yang,X.-D., Zhang,F.-C. and Qin,C.-F. TITLE Complete genome of Zika virus GZ01 isolate from China JOURNAL Unpublished REFERENCE 2 (bases 1 to 10272) AUTHORS Deng,Y.-Q., Li,X.-F., Wang,H.-J., Ye,Q., Jiang,T., Zhang,F.-C. and Qin,C.-F. TITLE Direct Submission JOURNAL Submitted (27-FEB-2016) Department of Virology, Beijing Institute of Microbiology and Epidemiology, No. 20 Dongda Street, Fengtai District, Beijing, Beijing 10071, China COMMENT ##Assembly-Data-START## Assembly Method :: SeqMan v. 7.1.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10272 /organism="Zika virus" /mol_type="genomic RNA" /isolate="GZ01" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="China" /collection_date="14-Feb-2016" /note="type: Asia" CDS 1..10272 /codon_start=1 /product="polyprotein" /protein_id="AMM39805.1" /db_xref="GI:1001904409" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAVRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNIIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVASCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 atgaaaaacc caaaaaagaa atccggagga ttccggattg tcaatatgct aaaacgcgga 61 gtagcccgtg tgagcccctt tgggggcttg aagaggctgc cagccggact tctgctgggt 121 catgggccca tcaggatggt cttggcgatt ctagcctttt tgagattcac ggcaatcaag 181 ccatcactgg gtctcatcaa tagatggggt tcagtgggga aaaaagaggc tatggaaata 241 ataaagaagt tcaagaaaga tctggctgcc atgctgagaa taatcaatgc taggaaggag 301 aagaagagac gaggcgcaga aactagtgtc ggaattgttg gcctcctgct gaccacagct 361 atggcagcgg aggtcactag acgtgggagt gcatactata tgtacttgga cagaaacgat 421 gctggggagg ccatatcttt tccaaccaca ttggggatga ataagtgtta tatacagatc 481 atggatcttg gacacatgtg tgatgccacc atgagctatg aatgccctat gctggatgag 541 ggggtggaac cagatgacgt cgattgttgg tgcaacacga cgtcaacttg ggttgtgtac 601 ggaacctgcc atcacaaaaa aggtgaagca cggagatcta gaagagctgt gacgctccct 661 tcccattcca ctaggaagct gcaaacgcgg tcgcaaacct ggttggaatc aagagaatac 721 acaaagcact tgattagagt cgaaaattgg atattcagga accctggctt cgcgttagca 781 gcagctgcta tcgcttggct tttgggaagc tcaacgagcc aaaaagtcat atacttggtc 841 atgatactgc tgattgcccc ggcatacagc atcaggtgca taggagtcag caatagggac 901 tttgtggaag gtatgtcagg tgggacttgg gttgatgttg tcttggaaca tggaggttgt 961 gtcaccgtaa tggcacagga caaaccgact gtcgacatag agctggttac aacaacagtc 1021 agcaacatgg cggaggtaag atcctactgc tatgaggcat caatatcaga catggcttcg 1081 gacagccgct gcccaacaca aggtgaagcc taccttgaca agcaatcaga cactcaatat 1141 gtctgcaaaa gaacgttagt ggacagaggc tggggaaatg gatgtggact ttttggcaaa 1201 gggagcctgg tgacatgcgc taagtttgca tgctccaaga aaatgaccgg gaaaagcatc 1261 cagccagaga atctggagta ccggataatg ctgtcagttc atggctccca gcacagtggg 1321 atgatcgtta atgacacagg acatgaaact gatgagaata gagcgaaagt tgagataacg 1381 cccaattcac caagagccga agccaccctg gggggttttg gaagcctagg acttgattgt 1441 gaaccgagga caggccttga cttttcagat ttgtattact tgactatgaa taacaagcac 1501 tggttggttc acaaggagtg gttccacgac attccattac cttggcacgc tggggcagac 1561 accggaactc cacactggaa caacaaagaa gcactggtag agttcaagga cgcacatgcc 1621 aaaaggcaaa ctgtcgtggt tctagggagt caagaaggag cagttcacac ggcccttgct 1681 ggagctctgg aggctgagat ggatggagca aagggaaggc tgtcctctgg ccacttgaaa 1741 tgtcgcctga aaatggataa acttagattg aagggcgtgt catactcctt gtgtactgca 1801 gcgttcacat tcaccaagat cccggctgaa acactgcacg ggacagtcac agtggaggta 1861 cagtacgcag ggacagatgg accttgcaag gttccagctc agatggcggt ggacatgcaa 1921 actctgaccc cagttgggag gttgataacc gctaaccccg taatcactga aagcactgag 1981 aactctaaga tgatgctgga acttgatcca ccatttgggg actcttacat tgtcatagga 2041 gtcggggaga agaagatcac ccaccactgg cacaggagtg gcagcaccat tggaaaagca 2101 tttgaagcca ctgtgagagg tgccaagaga atggcagtct tgggagacac agcctgggac 2161 tttggatcag ttggaggcgc tctcaactca ttgggcaagg gcatccatca aatttttgga 2221 gcagctttca aatcattgtt tggaggaatg tcctggttct cacaaattct cattggaacg 2281 ttgctgatgt ggttgggtct gaacacaaag aatggatcta tttcccttat gtgcttggcc 2341 ttagggggag tgttgatctt cttatccaca gccgtctctg ctgatgtggg gtgctcggtg 2401 gacttctcaa agaaggagac gagatgcggt acaggggtgt ttgtctataa cgacgttgaa 2461 gcctggaggg acaggtacaa gtaccatcct gactcccccc gtagattggc agcagcagtc 2521 aagcaagcct gggaagatgg tatctgcggg atctcctctg tttcaagaat ggaaaacatc 2581 atgtggagat cagtagaagg ggagctcaac gcaatcctgg aagagaatgg agttcaactg 2641 acggtcgttg tgggatctgt aaaaaacccc atgtggagag gtccacagag attgcccgtg 2701 cctgtgaacg agctgcccca cggctggaag gcttggggga aatcgtactt cgtcagagca 2761 gcaaagacaa ataacagctt tgtcgtggat ggtgacacac tgaaggaatg cccactcaaa 2821 catagagcat ggaacagctt tcttgtggag gatcatgggt tcggggtatt tcacactagt 2881 gtctggctca aggttagaga agactattca ttagagtgtg atccagccgt tattggaaca 2941 gctgttaagg gaaaggaggc tgtacacagt gatctaggct actggattga gagtgagaag 3001 aatgacacat ggaggctgaa gagggcccat ctgatcgaga tgaaaacatg tgaatggcca 3061 aagtcccaca cattgtggac agatggaata gaagagagtg atctgatcat acccaagtct 3121 ttagctgggc cactcagcca tcacaatacc agagagggct acaggaccca aatgaaaggg 3181 ccatggcaca gtgaggagct tgaaattcgg tttgaggaat gcccaggcac taaggtccac 3241 gtggaggaaa catgtggaac aagaggacca tctctgagat caaccactgc aagcggaagg 3301 gtgatcgagg aatggtgctg cagggagtgc acaatgcccc cactgtcgtt ccgggctaaa 3361 gatggctgtt ggtatggaat ggagataagg cccaggaaag aaccagaaag caacttagta 3421 aggtcaatgg tgactgcagg atcaactgat cacatggacc acttctccct tggagtgctt 3481 gtgatcctgc tcatggtgca ggaagggctg aagaagagaa tgaccacaaa gatcatcata 3541 agcacatcaa tggcagtgct ggtagctatg atcctgggag gattttcaat gagtgacctg 3601 gctaagcttg caattttgat gggtgccacc ttcgcggaaa tgaacactgg aggagatgta 3661 gctcatctgg cgctgatagc ggcattcaaa gtcagaccag cgttgctggt atctttcatc 3721 ttcagagcta attggacacc ccgtgaaagc atgctgctgg ccttggcctc gtgtcttttg 3781 caaactgcga tctccgcctt ggaaggcgac ctgatggttc tcatcaatgg ttttgctttg 3841 gcctggttgg cagtacgagc gatggttgtt ccacgcactg ataacatcac cttagcaatc 3901 ctggctgctc tgacaccact ggcccggggc acactgcttg tggcgtggag agcaggcctt 3961 gctacttgcg gggggtttat gctcctctct ctgaagggaa aaggcagtgt gaagaagaac 4021 ttaccatttg tcatggccct gggactaacc gctgtgaggc tggtcgaccc catcaacgtg 4081 gtgggactgc tgttgctcac aaggagtggg aagcggagct ggccccctag cgaagtactc 4141 acagctgttg gcctgatatg cgcattggct ggagggttcg ccaaggcaga tatagagatg 4201 gctgggccca tggccgcggt cggtctgcta attgtcagtt acgtggtctc aggaaagagt 4261 gtggacatgt acattgaaag agcaggtgac atcacatggg aaaaagatgc ggaagtcact 4321 ggaaacagtc cccggctcga tgtggcgcta gatgagagtg gtgatttctc cctggtggag 4381 gatgacggtc cccccatgag agagatcata ctcaaggtgg tcctgatgac catctgtggc 4441 atgaacccaa tagccatacc ctttgcagct ggagcgtggt acgtatacgt gaagactgga 4501 aaaaggagtg gtgctctatg ggatgtgcct gctcccaagg aagtaaaaaa gggggagacc 4561 acagatggag tgtacagagt aatgactcgc agactgctag gttcaacaca agttggagtg 4621 ggagttatgc aagagggggt ctttcacact atgtggcacg tcacaaaagg atccgcgctg 4681 agaagcggtg aagggagact tgatccatac tggggagatg tcaagcagga tctggtgtca 4741 tactgtggtc catggaagct agatgccgcc tgggacgggc acagcgaggt gcagctcttg 4801 gccgtgcccc ccggagagag agcgaggaac atccagactc tgcccggaat atttaagaca 4861 aaggatgggg acattggagc ggttgcgctg gattacccag caggaacttc aggatctcca 4921 atcctagaca agtgtgggag agtgatagga ctttatggca atggggtcgt gatcaaaaat 4981 gggagttatg ttagtgccat cacccaaggg aggagggagg aagagactcc tgttgagtgc 5041 ttcgagcctt cgatgctgaa gaagaagcag ctaactgtct tagacttgca tcctggagct 5101 gggaaaacca ggagagttct tcctgaaata gtccgtgaag ccataaaaac aagactccgt 5161 actgtgatct tagctccaac cagggttgtc gctgctgaaa tggaggaggc ccttagaggg 5221 cttccagtgc gttatatgac aacagcagtc aatgtcaccc actctggaac agaaatcgtc 5281 gacttaatgt gccatgccac cttcacttca cgtctactac agccaattag agtccccaac 5341 tataatctgt atattatgga tgaggcccac ttcacagatc cctcaagtat agcagcaaga 5401 ggatacattt caacaagggt tgagatgggc gaggcggctg ccatcttcat gaccgccacg 5461 ccaccaggaa cccgtgacgc atttccggac tccaactcac caattatgga caccgaagtg 5521 gaagtcccag agagagcctg gagctcaggc tttgattggg tgacggatca ttctggaaaa 5581 acagtttggt ttgttccaag cgtgaggaac ggcaatgaga tcgcagcttg tctgacaaag 5641 gctggaaaac gggtcataca gctcagcaga aagacttttg agacagagtt ccagaaaaca 5701 aaacatcaag agtgggactt tgtcgtgaca actgacattt cagagatggg cgccaacttt 5761 aaagctgacc gtgtcataga ttccaggaga tgcctaaagc cggtcatact tgatggcgag 5821 agagtcattc tggctggacc catgcctgtc acacatgcca gcgctgccca gaggaggggg 5881 cgcataggca ggaatcccaa caaacctgga gatgagtatc tgtatggagg tgggtgcgca 5941 gagactgacg aagaccatgc acactggctt gaagcaagaa tgctccttga caatatttac 6001 ctccaagatg gcctcatagc ctcgctctat cgacctgagg ccgacaaagt agcagccatt 6061 gagggagagt tcaagcttag gacggagcaa aggaagacct ttgtggaact catgaaaaga 6121 ggagatcttc ctgtttggct ggcctatcag gttgcatctg ccggaataac ctacacagat 6181 agaagatggt gctttgatgg cacgaccaac aacaccataa tggaagacag tgtgccggca 6241 gaggtgtgga ccagacacgg agagaaaaga gtgctcaaac cgaggtggat ggacgccaga 6301 gtttgttcag atcatgcggc cctgaagtca ttcaaggagt ttgccgctgg gaaaagagga 6361 gcggcttttg gagtgatgga agccctggga acactgccag gacacatgac agagagattc 6421 caggaagcca ttgacaacct cgctgtgctc atgcgggcag agactggaag caggccttac 6481 aaagccgcgg cagcccaatt gccggagacc ctagagacca ttatgctttt ggggttgctg 6541 ggaacagtct cgctgggaat cttcttcgtc ttgatgagga acaagggcat agggaagatg 6601 ggctttggaa tggtgactct tggggccagc gcatggctca tgtggctctc ggaaattgag 6661 ccagccagaa ttgcatgtgt cctcattgtt gtgttcctat tgctggtggt gctcatacct 6721 gagccagaaa agcaaagatc tccccaggac aaccaaatgg caatcatcat catggtagca 6781 gtaggtcttc tgggcttgat taccgccaat gaactcggat ggttggagag aacaaagagt 6841 gacctaagcc atctaatggg aaggagagag gagggggcaa ccataggatt ctcaatggac 6901 attgacctgc ggccagcctc agcttgggcc atctatgctg ccttgacaac tttcattacc 6961 ccagccgtcc aacatgcagt gaccacctca tacaacaact actccttaat ggcgatggcc 7021 acgcaagctg gagtgttgtt tggtatgggc aaagggatgc cattctacgc atgggacttt 7081 ggagtcccgc tgctaatgat aggctgctac tcacaattaa cacccctgac cctaatagtg 7141 gccatcattt tgctcgtggc gcactacatg tacttgatcc cagggctgca ggcagcagct 7201 gcgcgtgctg cccagaagag aacggcagct ggcatcatga agaaccctgt tgtggatgga 7261 atagtggtga ctgacattga cacaatgaca attgaccccc aagtggagaa aaagatggga 7321 caggtgctac tcatagcagt agccgtctcc agcgccatac tgtcgcggac cgcctggggg 7381 tggggggagg ctggggccct gatcacagcc gcaacttcca ctttgtggga aggctctccg 7441 aacaagtact ggaactcctc tacagccact tcactgtgta acatttttag gggaagttac 7501 ttggctggag cttctctaat ctacacagta acaagaaacg ctggcttggt caagagacgt 7561 gggggtggaa caggagagac cctgggagag aaatggaagg cccgcttgaa ccagatgtcg 7621 gccctggagt tctactccta caaaaagtca ggcatcaccg aggtgtgcag agaagaggcc 7681 cgccgcgccc tcaaggacgg tgtggcaacg ggaggccatg ctgtgtcccg aggaagtgca 7741 aagctgagat ggttggtgga gcggggatac ctgcagccct atggaaaggt cattgatctt 7801 ggatgtggca gagggggctg gagttactac gccgccacca tccgcaaagt tcaagaagtg 7861 aaaggataca caaaaggagg ccctggtcat gaagaacccg tgttggtgca aagctatggg 7921 tggaacatag tccgtcttaa gagtggggtg gacgtctttc atatggcggc tgagccgtgt 7981 gacacgttgc tgtgtgacat aggtgagtca tcatctagtc ctgaagtgga agaagcacgg 8041 acgctcagag tcctctccat ggtgggggat tggcttgaaa aaagaccagg agccttttgc 8101 ataaaagtgt tgtgcccata caccagcact atgatggaaa ccctggagcg actgcagcgt 8161 aggtatgggg gaggactggt cagagtgcca ctctcccgca actctacaca tgagatgtac 8221 tgggtctctg gagcgaaaag caacatcata aaaagtgtgt ccaccacgag ccagctcctc 8281 ttggggcgca tggacgggcc taggaggcca gtgaaatatg aggaggatgt gaatctcggc 8341 tctggcacgc gggctgtggc aagctgcgct gaagctccca acatgaagat cattggtaac 8401 cgcattgaaa ggatccgcag tgagcacgcg gaaacgtggt tctttgacga gaaccaccca 8461 tataggacat gggcttacca tggaagctat gaggccccca cacaagggtc agcgtcctct 8521 ctaataaacg gggttgtcag gctcctgtca aaaccctggg atgtggtgac tggagtcaca 8581 ggaatagcca tgaccgacac cacaccgtat ggtcagcaaa gagttttcaa ggaaaaagtg 8641 gacactaggg tgccagaccc ccaagaaggc actcgtcagg ttatgagcat ggtctcttcc 8701 tggttgtgga aagagctagg caaacacaaa cggccacgag tctgtaccaa agaagagttc 8761 atcaacaagg ttcgtagcaa tgcagcatta ggggcaatat ttgaagagga aaaagagtgg 8821 aagactgcag tggaagctgt gaacgatcca aggttctggg ctctagtgga caaggaaaga 8881 gagcaccacc tgagaggaga gtgccagagt tgtgtgtaca acatgatggg aaaaagagaa 8941 aagaaacaag gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta 9001 ggggctagat ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg 9061 agagagaact caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta 9121 gaagagatga gtcgtatacc aggaggaagg atgtatgcag atgacactgc tggctgggac 9181 acccgcatta gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa 9241 gggcacaggg ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag 9301 gtccttagac cagctgaaaa agggaaaaca gttatggaca ttatttcgag acaagaccaa 9361 agggggagcg gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa 9421 ctcattcgga atatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg 9481 aggtcagaga aagtgaccaa ctggttgcag agcaacggat gggataggct caaacgaatg 9541 gcagtcagtg gagatgattg cgttgtgaag ccaattgatg ataggtttgc acatgccctc 9601 aggttcttga atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact 9661 ggatgggaca actgggaaga agttccgttt tgctcccacc atttcaacaa gctccatctc 9721 aaggacggga ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc 9781 cgcgtctctc caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat 9841 gcgcaaatgt ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc 9901 atttgttcat ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat 9961 ggaaagggag aatggatgac cactgaagac atgcttgtgg tgtggaacag agtgtggatt 10021 gaggagaacg accacatgga agacaagacc ccagttacga aatggacaga cattccctat 10081 ttgggaaaaa gggaagactt gtggtgtgga tctctcatag ggcacagacc gcgcaccacc 10141 tgggctgaga acattaaaaa cacagtcaac atggtgcgca ggatcatagg tgatgaagaa 10201 aagtacatgg actacctatc cacccaagtt cgctacttgg gtgaagaagg gtctacacct 10261 ggagtgctgt aa

Beijing Institute of Microbiology and Epidemiology has released a full Zika sequence,GZ01 from urine collected Feb 14,2016. http://www.ncbi.nlm.nih.gov/nuccore/KU820898.1

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1852518525100%0.0100%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1839018390100%0.099%KU820899.2Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1828218282100%0.099%KJ776791.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1823618236100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1821318213100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1820418204100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1820418204100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1820418204100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1819118191100%0.099%KU365780.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1818618186100%0.099%KU647676.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1818618186100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1818218182100%0.099%KU501217.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1818218182100%0.099%KU312312.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome181791817999%0.099%KU497555.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1817718177100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1817718177100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1817718177100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1817718177100%0.099%KU365778.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1817318173100%0.099%KU820897.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1816818168100%0.099%KU922960.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1816818168100%0.099%KU501215.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1816418164100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1815518155100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1815318153100%0.099%KU853012.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1814618146100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1814618146100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1814618146100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1799717997100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1796117961100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds178401784099%0.099%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176221762298%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758917589100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1741617416100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164291642999%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1323213232100%0.089%KU720415.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1323013230100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1323013230100%0.089%KF268948.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132301323099%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1322513225100%0.089%KF383115.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1322513225100%0.089%DQ859059.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1322313223100%0.089%KF268950.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1321413214100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1320913209100%0.089%LC002520.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds131941319499%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1318013180100%0.088%KF383116.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1315113151100%0.088%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1310913109100%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds130881308899%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1289712965100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128341283497%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108351083597%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496227%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4935493527%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4632463225%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4623462325%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3431343118%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3202320217%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2823416895%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2042204211%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1990199011%0.098%KU179098.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds171917199%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds171817189%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds171617169%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds171217129%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds171217129%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds171217129%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds171017109%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds157015708%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds138813887%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds135213527%0.098%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds133313337%0.097%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds132413247%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1292129210%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds123612366%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds119811986%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232298.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds118911896%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds117311736%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds116911696%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds116611666%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds116211626%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113011306%0.098%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds108110818%0.089%KF270886.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds9919917%0.088%KF270887.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9849847%0.089%KF383022.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds9829825%0.099%KU867812.1

LOCUS KU866423 10272 bp RNA linear VRL 15-MAR-2016 DEFINITION Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds. ACCESSION KU866423 VERSION KU866423.1 GI:1003097085 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10272) AUTHORS Li,X.-F., Deng,Y.-Q., Wang,H.-J., Zhang,N.-N., Xie,D.-Y., Cao,W.-C. and Qin,C.-F. TITLE Direct Submission JOURNAL Submitted (04-MAR-2016) Department of Virology, Beijing Institute of Microbiology and Epidemiology, No.20 Dongda Street, Fengtai District, Beijing, Beijing 10071, China COMMENT ##Assembly-Data-START## Assembly Method :: DNAStar v. 7.0 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10272 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika virus/SZ01/2016" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="China: Shenzhen" /collection_date="2016" /note="patient had travelled to American Samoa; genotype: Asian" CDS 1..10272 /codon_start=1 /product="polyprotein" /protein_id="AMO03410.1" /db_xref="GI:1003097086" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTNVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGARRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFQAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLKTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIIRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRSMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVRPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMMRRIIGDEEKYVDYLST QVRYLGEEGSTPGVL" ORIGIN 1 atgaaaaacc caaaaaagaa atccggagga ttccggattg tcaatatgct aaaacgcgga 61 gtagcccgtg tgagcccctt tgggggcttg aagaggctgc cagccggact tctgctgggt 121 catgggccca tcaggatggt cttggcgatt ctagccttct tgagattcac ggcaatcaag 181 ccatcactgg gtctcatcaa tagatggggt tcagtgggga aaaaagaggc tatggaaata 241 ataaagaagt tcaagaaaga tctggctgcc atgctgagaa taatcaatgc taggaaggag 301 aagaagagac gaggcgcaga tactaatgtc ggaattgttg gcctcctgct gaccacagct 361 atggcagcgg aggtcactag acgtgggagt gcatactata tgtacttgga cagaaacgat 421 gctggggagg ccatatcttt tccaaccaca ttggggatga ataagtgtta tatacagatc 481 atggatcttg gacacatgtg tgatgccacc atgagctatg aatgccctat gctggatgag 541 ggggtggaac cagatgacgt cgattgttgg tgcaacacga cgtcaacttg ggttgtgtac 601 ggaacctgcc atcacaaaaa aggtgaagca cggagatcta gaagagctgt gacgctcccc 661 tcccattcca ctaggaagct gcaaacgcgg tcgcaaactt ggttggaatc aagagaatac 721 acaaagcact tgattagagt cgaaaattgg atattcagga accctggctt cgcgttagca 781 gcagctgcca tcgcttggct tttgggaagc tcaacgagcc aaaaagtcat atacttggtc 841 atgatactgc tgattgcccc ggcatacagc atcaggtgca taggagtcag caatagggac 901 tttgtggaag gtatgtcagg tgggacttgg gttgatgttg tcttggaaca tggaggttgt 961 gtcaccgtaa tggcacagga caaaccgact gtcgacatag agctggttac aacaacagtc 1021 agcaacatgg cggaggtaag atcctactgc tatgaggcat caatatcgga catggcttcg 1081 gacagccgct gcccaacaca aggtgaagcc taccttgaca agcaatcaga cactcaatat 1141 gtctgcaaaa gaacgttagt ggacagaggc tggggaaatg gatgtggact ttttggcaaa 1201 gggagcctgg tgacatgcgc taagtttgca tgctccaaga aaatgaccgg gaagagcatc 1261 cagccagaga atctggagta ccggataatg ctgtcagttc atggctccca gcacagtggg 1321 atgatcgtta atgacacagg acatgaaact gatgagaata gagcgaaggt tgagataacg 1381 cccaattcac caagagccga agccaccctg gggggttttg gaagcctagg acttgattgt 1441 gaaccgagga caggccttga cttttcagat ttgtattact tgactatgaa taacaagcac 1501 tggttggttc acaaggagtg gttccacgac attccattac cttggcacgc tggggcagac 1561 accggaactc cacactggaa caacaaagaa gcactggtag agttcaagga cgcacatgcc 1621 aaaaggcaaa ctgtcgtggt tctagggagt caagaaggag cagttcacac ggcccttgct 1681 ggagctctgg aggctgagat ggatggtgca aagggaaggc tgtcctctgg ccacttgaaa 1741 tgtcgcctga aaatggataa acttagattg aagggcgtgt catactcctt gtgtaccgca 1801 gcgttcacat tcaccaagat cccggctgaa acactgcacg ggacagtcac agtggaggta 1861 cagtacgcag ggacagatgg accttgcaag gttccagctc agatggcggt ggacatgcaa 1921 actctgaccc cagttgggag gctgataacc gctaaccccg taatcactga aagcactgag 1981 aactccaaga tgatgctgga acttgatcca ccatttgggg actcttacat tgtcatagga 2041 gtcggggaga agaagatcac ccaccactgg cacaggagtg gcagcaccat tggaaaagca 2101 tttgaagcca ctgtgagagg tgccaggaga atggcagtct tgggagacac agcctgggac 2161 tttggatcag ttggaggcgc tctcaactca ttgggcaagg gcatccatca aatttttgga 2221 gcagctttca aatcattgtt tggaggaatg tcctggttct cacaaattct cattggaacg 2281 ttgctgatgt ggttgggtct gaacacaaag aatggatcta tttcccttat gtgcttggcc 2341 ttagggggag tgttgatctt cttatccaca gccgtctctg ctgatgtggg gtgctcggtg 2401 gacttctcaa agaaggagac gagatgcggt acaggggtgt tcgtctataa cgacgttgaa 2461 gcctggaggg acaggtacaa gtaccatcct gactcccccc gtagattggc agcagcagtc 2521 aagcaagcct gggaagatgg tatctgtggg atctcctctg tttcaagaat ggaaaacatc 2581 atgtggagat cagtagaagg ggagctcaac gcaatcctgg aagagaatgg agttcaactg 2641 acggtcgttg tgggatctgt aaaaaacccc atgtggagag gtccacagag attgcccgtg 2701 cctgtgaacg agctgcccca cggctggaag gcttggggga aatcgtactt cgtcagagca 2761 gcaaagacaa ataacagctt tgtcgtggat ggtgacacac tgaaggaatg cccactcaaa 2821 catagagcat ggaacagctt tcttgtggag gatcatgggt tcggggtatt tcacactagt 2881 gtctggctca aggttagaga agattattca ttagagtgtg atccagccgt tattggaaca 2941 gctgttaagg gaaaggaggc tgtacacagt gatctaggct actggattga gagtgagaag 3001 aatgacacat ggaggctgaa gagggcccat ctgatcgaga tgaaaacatg tgaatggcca 3061 aagtcccaca cattgtggac agatggaata gaagagagtg atctgatcat acccaagtct 3121 ttagctgggc cactcagcca tcacaatacc agagagggct acaggaccca aatgaaaggg 3181 ccatggcaca gtgaagagct tgaaattcgg tttgaggaat gcccaggcac caaggtccac 3241 gtggaggaaa catgtggaac aagaggacca tctctgagat caaccacagc aagcggaagg 3301 gtgatcgagg aatggtgctg cagggagtgc acaatgcccc cactgtcgtt ccaggctaaa 3361 gatggctgtt ggtatggaat ggagataagg cccaggaaag aaccagaaag taacttagta 3421 aggtcaatgg tgactgcagg atcaactgat cacatggatc acttctccct tggagtgctt 3481 gtgattctgc tcatggtgca ggaagggctg aagaagagaa tgaccacaaa gatcatcata 3541 agcacatcaa tggcagtgct ggtagctatg atcctgggag gattttcaat gagtgacctg 3601 gctaagcttg caattttgat gggtgccacc ttcgcggaaa tgaacactgg aggagatgta 3661 gctcatctgg cgctgatagc ggcattcaaa gtcagaccag cgttgctggt atctttcatc 3721 ttcagagcta attggacacc ccgtgaaagc atgctgctgg ccttggcctc gtgtcttttg 3781 caaactgcga tctccgcctt ggaaggcgac ctgatggttc tcatcaatgg ttttgctttg 3841 gcctggttgg caatacgagc gatggttgtt ccacgcactg ataacatcac cttggcaatc 3901 ctggctgctc tgacaccact ggcccggggc acactgcttg tggcgtggag agcaggcctt 3961 gctacttgcg gggggtttat gctcctctct ctgaagggaa aaggcagtgt gaagaagaac 4021 ttaccatttg tcatggccct gggactaacc gctgtgaggc tggtcgaccc catcaacgtg 4081 gtgggactgc tgttgctcac aaggagtggg aagcggagct ggccccctag cgaagtactc 4141 acagctgttg gcctgatatg cgcattggct ggagggttcg ccaaggcaga tatagagatg 4201 gctgggccca tggccgcggt cggtctgcta attgtcagtt acgtggtctc aggaaagagt 4261 gtggacatgt acattgaaag agcaggtgac atcacatggg aaaaagatgc ggaagtcact 4321 ggaaacagtc cccggcttga tgtggcgcta gatgagagtg gtgatttctc cctggtggag 4381 gatgacggtc cccccatgag agagatcata ctcaaggtgg tcctgatgac catctgtggc 4441 atgaacccaa tagccatacc ctttgcagct ggagcgtggt acgtatacgt gaagactgga 4501 aaaaggagtg gagctctatg ggatgtgcct gctcccaagg aagtaaaaaa gggggagacc 4561 acagatggag tgtacagagt gatgactcgt agactgctag gttcaacaca agttggagtg 4621 ggagttatgc aagagggggt ctttcacacc atgtggcacg tcacaaaagg atccgcgctg 4681 agaagcggtg aagggagact tgatccatac tggggagatg tcaagcagga tctggtgtca 4741 tactgtggtc catggaagct agatgccgcc tgggacgggc acagcgaggt gcagctcttg 4801 gccgtgcccc ccggagagag agcgaggaac atccagactc tgcccggaat atttaagaca 4861 aaggatgggg acattggagc ggttgcgctg gattacccag caggaacttc aggatctcca 4921 atcctagaca agtgtgggag agtgatagga ctttatggca atggggtcgt gatcaaaaat 4981 gggagttatg ttagtgccat cacccaaggg aggagggagg aagagactcc tgttgagtgc 5041 ttcgagcctt cgatgctgaa gaagaagcag ctaactgtct tagacttgca tcctggagct 5101 gggaaaacca ggagagttct tcctgaaata gtccgtgaag ccataaaaac aagactccgt 5161 actgtgatct tagctccaac cagggttgtc gctgccgaaa tggaggaagc ccttagaggg 5221 cttccagtgc gttatatgac aacagcagtc aatgtcaccc actctggaac agaaatcgtc 5281 gacttaatgt gccatgccac cttcacttca cgtctactac agccaatcag agtccccaac 5341 tataatctgt atattatgga tgaggcccac ttcacagatc cctcaagtat agcagcaaga 5401 ggatacattt caacaagggt tgagatgggc gaggcggctg ccatcttcat gaccgccacg 5461 ccaccaggaa cccgtgacgc atttccggac tccaactcac caattatgga caccgaagtg 5521 gaagtcccag agagagcctg gagctcaggc tttgattggg tgacggatca ttctggaaaa 5581 acagtctggt ttgttccaag cgtgaggaac ggcaatgaga tcgcagcttg tctgacaaag 5641 gctggaaaac gggtcataca gctcagcaga aagacttttg agacagagtt ccagaaaaca 5701 aaacatcaag agtgggactt tgtcgtgaca actgacattt cagagatggg cgccaacttt 5761 aaagctgacc gtgtcataga ttccaggaga tgcctaaagc cggtcatact tgatggcgag 5821 agagtcattc tggctggacc catgcctgtc acacatgcca gcgctgccca gaggaggggg 5881 cgcataggca ggaatcccaa caaacctgga gatgagtatc tgtatggagg tgggtgcgca 5941 gagactgacg aagaccatgc acactggctt gaagcaagaa tgctccttga caatatttac 6001 ctccaagatg gcctcatagc ctcgctctat cgacctgagg ccgacaaagt agcagccatt 6061 gagggagagt tcaagcttaa gacggagcaa aggaagacct ttgtggaact catgaaaaga 6121 ggagatcttc ctgtttggct ggcctatcag gttgcatctg ccggaataac ctacacagat 6181 agaagatggt gctttgatgg cacgaccaac aacaccataa tggaagacag tgtgccggca 6241 gaagtgtgga ccagacacgg agagaaaaga gtgctcaaac cgaggtggat ggacgccaga 6301 gtttgttcag atcatgcggc cctgaagtca ttcaaagagt ttgccgctgg gaaaagagga 6361 gcggcctttg gagtgatgga agccctggga acactgccag gacatatgac agagagattc 6421 caggaggcca ttgacaacct cgctgtgctc atgcgggcag agactggaag caggccctac 6481 aaagccgcgg cggcccaatt accggagacc ctagagacta tcatgctttt ggggttgctg 6541 ggaacagtct cgctgggaat ctttttcgtc ttgatgcgga acaagggcat agggaagatg 6601 ggctttggaa tggtgactct tggggccagc gcatggctta tgtggctctc ggaaattgag 6661 ccagccagaa ttgcatgtgt cctcattgtt gtgttcctat tgctggtggt gctcatacct 6721 gagccagaaa agcaaagatc tccccaggac aaccaaatgg caatcatcat catggtagca 6781 gtgggtcttc tgggcttgat taccgccaat gaactcggat ggttggagag aacaaagagt 6841 gacctaagcc atctaatggg aaggagagag gagggggcaa ccataggatt ctcaatggac 6901 attgacctgc ggccagcctc agcttgggcc atctacgctg ccttgacaac tttcattacc 6961 ccagccgtcc aacatgcagt gaccacttca tacaacaact actccttaat ggcgatggcc 7021 acgcaagctg gagtgttgtt tggtatgggc aaagggatgc cattctacgc atgggacttt 7081 ggagtcccgc tgctaatgat aggttgctac tcacaattaa cacccctgac cctaatagta 7141 gccatcattt tgctcgtggc gcactacatg tacttgatcc cagggctgca ggcagcagct 7201 gcgcgtgctg cccagaagag aacggcagct ggcatcatga agaaccctgt tgtggatgga 7261 atagtggtga ctgacattga cacaatgaca attgaccccc aagtggagaa aaagatggga 7321 caggtgctac tcatagcagt agccgtctcc agcgccatac tgtcgcggac cgcctggggg 7381 tggggggagg ctggggccct gatcacagct gcaacttcca ctttgtggga aggctctccg 7441 aacaagtact ggaactcctc tacagccact tcactgtgta acatttttag gggaagttac 7501 ttggctggag cttctctaat ctacacagta acaagaaacg ctggcttggt caagagacgt 7561 gggggtggaa caggagagac cctgggagag aaatggaagg cccgcttgaa ccagatgtcg 7621 gccctggagt tctactccta caaaaagtca ggcatcaccg aggtgtgcag agaagaggcc 7681 cgccgcgccc tcaaggacgg tgtggcaacg ggaggccatg ctgtgtcccg aggaagtgca 7741 aagctgagat ggttggtgga gcggggatac ctgcagccct atggaaaggt cattgatctt 7801 ggatgtggca gagggggctg gagttactac gccgccacca tccgcaaagt tcaagaagtg 7861 aaaggataca caaaaggagg ccctggtcat gaagaaccca tgttggtgca aagctatggg 7921 tggaacataa tccgtcttaa gagtggggtg gacgtctttc atatggcggc tgagccgtgt 7981 gacacgttgc tgtgtgacat aggtgagtca tcatctagtc ctgaagtgga agaagcacgg 8041 acgctcagag tcctttccat ggtgggggat tggcttgaaa aaagaccagg agccttttgt 8101 ataaaagtgt tgtgtccata caccagcact atgatggaaa ccctggagcg actgcagcgt 8161 aggtatgggg gaggactggt cagagtgcca ctctcccgca actctacaca tgagatgtac 8221 tgggtctctg gagcgaaaag caacaccata aaaagtgtgt ccaccacgag ccagctcctc 8281 ttggggcgca tggacgggcc caggaggcca gtgaaatatg aggaggatgt gaatctcggc 8341 tctggcacgc gggctgtggt aagctgcgct gaagctccca acatgaagat cattggtaac 8401 cgcattgaaa ggatccgcag tgagcacgcg gaaacgtggt tctttgacga gaaccaccca 8461 tataggacat gggcttacca tggaagctat gaggccccca cacaagggtc agcgtcctct 8521 ctaataaacg gggttgtcag gctcctgtca aaaccctggg atgtggtgac tggagtcaca 8581 ggaatagcca tgaccgacac cacaccgtat ggtcagcaaa gagttttcaa ggaaaaagtg 8641 gacactaggg tgccagatcc ccaagaaggc actcgtcagg ttatgagcat ggtctcttcc 8701 tggttgtgga aagagctagg caaacacaaa cggccacgag tctgtaccaa agaagagttc 8761 atcaacaagg ttcgtagcaa tgcagcatta ggggcaatat ttgaagagga aaaagagtgg 8821 aagactgcag tggaagctgt gaacgatcca aggttctggg ctctagtgga caaggaaaga 8881 gagcaccacc tgagaggaga gtgccagagt tgtgtgtaca acatgatggg aaaaagagaa 8941 aagaaacaag gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta 9001 ggggctagat ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg 9061 agagagaact caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta 9121 gaagagatga gtcgcatacc aggaggaagg atgtatgcag atgacactgc tggctgggac 9181 acccgcatca gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa 9241 gggcacaggg ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag 9301 gtccttagac cagctgaaaa agggaagaca gttatggaca ttatttcgag acaagaccaa 9361 agggggagcg gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa 9421 ctcattcgga gtatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg 9481 aggtcagaga aagtgaccaa ctggctgcag agcaacggat gggataggct caaacgaatg 9541 gcagtcagtg gagatgattg cgttgtgagg ccaattgatg ataggtttgc acatgccctc 9601 aggttcttga atgatatggg gaaagttagg aaggacacac aagagtggaa accctcaact 9661 ggatgggaca actgggagga agttccgttt tgctcccacc acttcaacaa gctccatctc 9721 aaggacggga ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgagct 9781 cgcgtctcac cgggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat 9841 gcgcaaatgt ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc 9901 atttgttcat ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat 9961 ggaaagggag aatggatgac cactgaagac atgcttgtgg tgtggaacag agtgtggatt 10021 gaggagaacg accacatgga agacaagacc ccagttacga aatggacaga cattccctat 10081 ttgggaaaaa gggaagactt gtggtgtggg tctctcatag ggcacagacc gcgcaccacc 10141 tgggctgaga acattaaaaa cacagtcaac atgatgcgta ggatcatagg tgatgaagaa 10201 aagtacgtgg actacctatc cacccaagtt cgctacttgg gcgaagaagg gtccacacct 10261 ggagtgctat aa

Beijing Institute of Microbiology and Epidemiology has released a full sequence, SZ01, from a patient in Shenzhen ex-American Samoa.

Zika: Panama has 'first microcephaly case outside Brazil'1 hour ago From the sectionLatin America & CaribbeanImage copyrightAPImage captionHealth experts strongly suspect a link between the virus and microcephalyZika virusZika outbreak: What you need to knowZika outbreak: Travel adviceMothers' fears amid Zika outbreakVideo How mums-to-be are tackling ZikaPanama has registered a baby born with a brain disorder believed linked to the Zika virus, in what is thought to be the first such case outside Brazil in the current outbreak. Traces of the mosquito-born virus were found in the baby's umbilical cord. The baby had been born with an underdeveloped brain, a condition known as microcephaly, which health experts suspect is linked to the virus. Brazil suspects most of its 860 cases of microcephaly are related to Zika. The Panamanian baby's mother had not reported any symptoms of Zika during her pregnancy. Her baby died four hours after being born. The World Health Organization (WHO) has declared a global public health emergency over the possible connection between the mosquito-born virus and microcephaly. The current Zika outbreak began almost a year ago in Brazil. Microcephaly cases have been centred in north-east Brazil, but the outbreak has affected people in more than 20 countries in the Americas. Some governments have advised women to delay getting pregnant, but before now no infants with microcephaly have tested positive for Zika outside Brazil in the current outbreak. Some cases of the brain condition were reported in an outbreak in French Polynesia in 2013. http://www.bbc.com/news/world-latin-america-35850696#?utm_source=twitterfeed&utm_medium=twitter

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1852518525100%0.0100%KU922923.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1852018520100%0.099%KU922960.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1850218502100%0.099%KU647676.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1841718417100%0.099%KU820897.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1838118381100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837518375100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836618366100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835718357100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1835718357100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1835718357100%0.099%KU365779.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183501835099%0.099%KU497555.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1834518345100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1833918339100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833618336100%0.099%KU501217.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833018330100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833018330100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833018330100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1832718327100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1832718327100%0.099%KU312312.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1831818318100%0.099%KU501215.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1830918309100%0.099%KU820898.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830918309100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830718307100%0.099%KU853012.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1829118291100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1829118291100%0.099%KU761564.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1827318273100%0.099%KU820899.2Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1816418164100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814118141100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1804218042100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177031770398%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758517585100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742517425100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164111641199%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1329013290100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132841328499%0.089%HQ234498.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328113281100%0.089%KF383119.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1327513275100%0.089%KF268948.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1327013270100%0.089%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1326813268100%0.089%LC002520.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1326813268100%0.089%KF268950.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1326613266100%0.089%KF268949.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1326113261100%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1323013230100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132231322399%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1320913209100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1314213142100%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131291312999%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1295413022100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128821288297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108531085397%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4958495827%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4931493127%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4677467725%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4668466825%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3434343418%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3202320217%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2852416195%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2078207811%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2017201711%0.099%KU179098.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138813887%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds135213527%0.098%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134213427%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1301130110%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124012406%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds122512256%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122312236%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121312136%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds120912096%0.099%KU232298.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120212026%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118011806%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311336%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1

LOCUS KU922923 10617 bp RNA linear VRL 16-MAR-2016 DEFINITION Zika virus isolate MEX/InDRE/Lm/2016, complete genome. ACCESSION KU922923 VERSION KU922923.1 GI:1005883179 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10617) AUTHORS Diaz-Quinonez,J.A., Pena-Alonso,R., Garces-Ayala,F., Mendieta-Condado,E., Escobar-Escamilla,N., Vazquez-Pichardo,M., Torres-Longoria,B., Lopez-Martinez,I., Hernandez-Rivas,L., Ruiz-Matus,C., Kuri-Morales,P.A. and Ramirez-Gonzalez,J.E. TITLE Molecular characterization of Zika virus in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 10617) AUTHORS Garces-Ayala,F., Ramirez-Gonzalez,J.E., Mendieta-Condado,E.R., Escobar-Escamilla,N., Ortiz-Alcantara,J.M., Gonzalez-Duran,E., Martinez-Rivera,I.I., Mandujano-Martinez,Ad.P., Pena-Alonso,R., Vazquez-Pichardo,M., Torres-Rodriguez,Mdl.L., Nunez-Leon,A., Torres-Longoria,B., Martinez-Rojano,H., Roman-Pedroza,J.F., Lopez-Martinez,I., Hernandez-Rivas,L., Garcia-Alegria,I., Gonzalez-Cervantes,J.G., Cruz-Rodriguez,J., Luna-Guzman,N., Jimenez-Corona,M.E., Ruiz-Matus,C., Kuri-Morales,P.A. and Diaz-Quinonez,J.A. TITLE Direct Submission JOURNAL Submitted (15-MAR-2016) Biologia Molecular y Validacion de Tecnicas, Instituto de Diagnostico y Referencia Epidemiologicos (InDRE), Francisco de P. Miranda 177 Col. Lomas de Plateros, Mexico, DF 01480, Mexico COMMENT ##Assembly-Data-START## Assembly Method :: T-Map v. 4.2.18 Coverage :: 130X Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10617 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MEX/InDRE/Lm/2016" /isolation_source="cerebrospinal fluid" /host="Homo sapiens" /db_xref="taxon:64320" /country="Mexico: Chiapas" /collection_date="25-Feb-2016" 5'UTR 1..47 CDS 48..10319 /codon_start=1 /product="polyprotein" /protein_id="AMQ34003.1" /db_xref="GI:1005883180" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIALAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALTAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERERN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEQAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEVLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 48..413 /product="capsid" mat_peptide 414..692 /product="Pr" mat_peptide 693..917 /product="M" mat_peptide 918..2429 /product="Env" mat_peptide 2430..3485 /product="NS1" mat_peptide 3486..4163 /product="NS2A" mat_peptide 4164..4553 /product="NS2B" mat_peptide 4554..6404 /product="NS3" mat_peptide 6405..6785 /product="NS4A" mat_peptide 6786..6854 /product="peptide 2K" mat_peptide 6855..7607 /product="NS4B" mat_peptide 7608..10316 /product="NS5" ORIGIN 1 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa 61 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 121 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 181 ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca tcactgggtc 241 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 301 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 361 gcgcagaaac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 421 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 481 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 541 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 601 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 661 acaaaaaagg tgaagcacgg agatctagaa gagccgtgac gctcccctcc cattccacta 721 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 781 ttagagtcga aaattggata ttcaggaacc ctggtttcgc tttagcagca gctgccatcg 841 cgtggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 901 ttgccctggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 961 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1021 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1081 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1141 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1201 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1261 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1321 tggagtaccg gataatgttg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1381 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1441 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1501 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1561 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1621 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1681 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1741 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1801 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1861 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1921 cagatggacc ttgcaaggtt ccagcccaga tggcggtgga catgcaaact ctgaccccag 1981 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2041 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2101 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2161 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2221 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2281 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2341 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2401 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2461 aggagacgag atgtggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2521 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2581 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2641 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2701 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2761 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2821 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2881 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 2941 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3001 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3061 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaaa tcccacacat 3121 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3181 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3241 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3301 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3361 ggtgctgcag ggagtgcaca atgcccccac tgtcgttctg ggctaaagat ggctgttggt 3421 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3481 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3541 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3601 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3661 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3721 tgacagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3781 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3841 ctgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3901 tacgagcgat ggttgttcca cgcactgaca acatcacctt ggcaatcctg gctgctctga 3961 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg 4021 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4081 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4141 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4201 tgatatgtgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4261 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4321 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4381 ggctcgacgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4441 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4501 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4561 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4621 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4681 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4741 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4801 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4861 gagagagaga gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4921 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 4981 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5041 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5101 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5161 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5221 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5281 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5341 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5401 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5461 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5521 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5581 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5641 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5701 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5761 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5821 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5881 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 5941 atcccaataa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6001 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6061 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6121 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6181 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6241 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6301 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6361 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6421 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6481 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6541 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6601 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6661 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6721 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6781 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6841 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6901 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 6961 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7021 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7081 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccactgc 7141 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7201 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7261 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7321 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7381 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7441 gggccctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7501 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7561 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7621 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7681 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7741 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7801 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7861 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7921 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc 7981 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8041 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8101 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8161 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8221 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8281 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8341 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8401 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8461 tccgcagtga gcaagcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8521 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8581 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8641 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8701 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8761 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8821 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8881 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 8941 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9001 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9061 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9121 gaggtggtgt tgaagtgctg ggattacaga gactcggata tgtcctagaa gagatgagtc 9181 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9241 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9301 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9361 ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9421 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9481 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9541 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9601 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9661 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9721 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9781 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9841 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9901 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 9961 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10021 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10081 acatggaaga caagacccca gttgcgaaat ggacagacat tccctatttg ggaaaaaggg 10141 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10201 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10261 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10321 caccaatctt aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10381 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10441 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10501 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10561 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggag

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1850718507100%0.099%KU647676.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1842018420100%0.099%KU820897.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1838418384100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1838118381100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1837218372100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1836318363100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1836318363100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1836318363100%0.099%KU365779.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183541835499%0.099%KU497555.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1834818348100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1834518345100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833918339100%0.099%KU501217.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833618336100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833618336100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833618336100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1833018330100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1833018330100%0.099%KU312312.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1832118321100%0.099%KU501215.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1831218312100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1831218312100%0.099%KU853012.1Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds1830318303100%0.099%KU740184.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1829418294100%0.099%KU761564.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1827618276100%0.099%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814618146100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1804718047100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177391773999%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177061770698%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758917589100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742917429100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1329513295100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132901329099%0.089%HQ234498.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328613286100%0.089%KF383119.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1327913279100%0.089%KF268948.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1327513275100%0.089%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1327213272100%0.089%LC002520.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327213272100%0.089%KF268950.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1327013270100%0.089%KF268949.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1326613266100%0.089%DQ859059.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1323413234100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132271322799%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1321413214100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1314613146100%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131351313599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1295813026100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128881288897%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108591085997%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496227%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4935493527%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4677467725%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4668466825%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3440344018%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3202320217%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2852416695%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2084208411%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2017201711%0.099%KU179098.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138813887%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds135213527%0.098%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134213427%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1301130110%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124012406%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds122512256%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122312236%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121312136%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds120912096%0.099%KU232298.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120212026%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118011806%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311336%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1

LOCUS KU922960 10617 bp RNA linear VRL 16-MAR-2016 DEFINITION Zika virus isolate MEX/InDRE/Sm/2016, complete genome. ACCESSION KU922960 VERSION KU922960.1 GI:1005883181 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10617) AUTHORS Diaz-Quinonez,J.A., Pena-Alonso,R., Garces-Ayala,F., Mendieta-Condado,E.R., Escobar-Escamilla,N., Vazquez-Pichardo,M., Torres-Longoria,B., Lopez-Martinez,I., Hernandez-Rivas,L., Ruiz-Matus,C., Kuri-Morales,P.A. and Ramirez-Gonzalez,J.E. TITLE Molecular characterization of Zika virus in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 10617) AUTHORS Mendieta-Condado,E.R., Ramirez-Gonzalez,J.E., Garces-Ayala,F., Escobar-Escamilla,N., Ortiz-Alcantara,J.M., Gonzalez-Duran,E., Mandujano-Martinez,Ad.P., Martinez-Rivera,I.I., Pena-Alonso,R., Vazquez-Pichardo,M., Torres-Rodriguez,Mdl.L., Nunez-Leon,A., Torres-Longoria,B., Martinez-Rojano,H., Roman-Pedroza,J.F., Lopez-Martinez,I., Hernandez-Rivas,L., Garcia-Alegria,I., Gonzalez-Cervantes,J.G., Cruz-Rodriguez,J., Luna-Guzman,N., Jimenez-Corona,M.E., Ruiz-Matus,C., Kuri-Morales,P.A. and D,J.A. TITLE Direct Submission JOURNAL Submitted (15-MAR-2016) Biologia Molecular y Validacion de Tecnicas, Instituto de Diagnostico y Referencia Epidemiologicos (InDRE), Francisco de P. Miranda 177 Col. Lomas de Plateros, Mexico, DF 01480, Mexico COMMENT ##Assembly-Data-START## Assembly Method :: Tmap v. 4.2.18 Coverage :: 134x Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10617 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MEX/InDRE/Sm/2016" /isolation_source="saliva" /host="Homo sapiens; female, 22 years old" /db_xref="taxon:64320" /country="Mexico: Chiapas" /collection_date="25-Feb-2016" 5'UTR 1..47 CDS 48..10319 /codon_start=1 /product="polyprotein" /protein_id="AMQ34004.1" /db_xref="GI:1005883182" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALTAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERERN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEQAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEVLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 48..413 /product="capsid" mat_peptide 414..692 /product="Pr" mat_peptide 693..917 /product="M" mat_peptide 918..2429 /product="Env" mat_peptide 2430..3485 /product="NS1" mat_peptide 3486..4163 /product="NS2A" mat_peptide 4164..4553 /product="NS2B" mat_peptide 4554..6404 /product="NS3" mat_peptide 6405..6785 /product="NS4A" mat_peptide 6786..6854 /product="peptide 2K" mat_peptide 6855..7607 /product="NS4B" mat_peptide 7608..10316 /product="NS5" ORIGIN 1 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa 61 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 121 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 181 ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca tcactgggtc 241 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca 301 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 361 gcgcagaaac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 421 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 481 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 541 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 601 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 661 acaaaaaagg tgaagcacgg agatctagaa gagccgtgac gctcccctcc cattccacta 721 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 781 ttagagtcga aaattggata ttcaggaacc ctggtttcgc tttagcagca gctgccatcg 841 cgtggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 901 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 961 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1021 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1081 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc 1141 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1201 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1261 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1321 tggagtaccg gataatgttg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1381 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa 1441 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1501 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1561 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1621 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1681 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1741 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1801 tggataaact tagattgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca 1861 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1921 cagatggacc ttgcaaggtt ccagcccaga tggcggtgga catgcaaact ctgaccccag 1981 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2041 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2101 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2161 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2221 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2281 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2341 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2401 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2461 aggagacgag atgtggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2521 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2581 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2641 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2701 gatctgtaaa aaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2761 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata 2821 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2881 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 2941 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3001 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3061 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaaa tcccacacat 3121 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3181 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3241 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3301 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3361 ggtgctgcag ggagtgcaca atgcccccac tgtcgttctg ggctaaagat ggctgttggt 3421 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3481 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca 3541 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3601 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3661 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3721 tgacagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3781 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3841 ctgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3901 tacgagcgat ggttgttcca cgcactgaca acatcacctt ggcaatcctg gctgctctga 3961 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg 4021 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4081 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4141 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4201 tgatatgtgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4261 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4321 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4381 ggctcgacgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4441 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4501 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4561 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4621 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4681 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4741 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4801 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg 4861 gagagagaga gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4921 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 4981 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta 5041 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga 5101 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5161 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5221 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt 5281 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5341 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5401 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5461 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5521 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5581 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5641 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5701 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5761 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5821 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5881 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 5941 atcccaataa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6001 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6061 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6121 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6181 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6241 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6301 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6361 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6421 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6481 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6541 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc 6601 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6661 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6721 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6781 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6841 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6901 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 6961 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7021 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag 7081 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccactgc 7141 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7201 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7261 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7321 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7381 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7441 gggccctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7501 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7561 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7621 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7681 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7741 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7801 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7861 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7921 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc 7981 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8041 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8101 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8161 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8221 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8281 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8341 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8401 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8461 tccgcagtga gcaagcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8521 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8581 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8641 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8701 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8761 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagttcatc aacaaggttc 8821 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8881 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 8941 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9001 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9061 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9121 gaggtggtgt tgaagtgctg ggattacaga gactcggata tgtcctagaa gagatgagtc 9181 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca 9241 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9301 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9361 ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9421 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9481 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9541 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9601 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9661 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9721 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9781 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9841 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9901 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 9961 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10021 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10081 acatggaaga caagacccca gttgcgaaat ggacagacat tccctatttg ggaaaaaggg 10141 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10201 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10261 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10321 caccaatctt aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10381 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10441 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10501 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10561 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggag

InDRE releases full Zika sequences from Feb 26 collections from saliva and CSF from 22F in Chiapas.

Department of Health: 46-year-old New Mexico man tests positive for Zika virusBy Shelby Perea and Candace HopkinsPublished: March 18, 2016, 4:51 pm Updated: March 18, 2016, 10:37 pmClick to share on Twitter (Opens in new window) Click to share on Google+ (Opens in new window) 579Share on Facebook (Opens in new window)579 Click to share on Pinterest (Opens in new window) Related CoverageWhat you need to know about Zika Virus New Mexico doctor weighs in on local Zika threat UAB experts: ‘Zika virus will burn itself out’ Can scientists prove Zika virus is causing birth defects? Map: Travel warning issued due to Zika virus UNM medical team uses ‘lemongrass bombs’ to kill Zika-carrying mosquitoes SANTA FE (KRQE) – New Mexico Department of Health officials have confirmed the first case of Zika virus in New Mexico. They say a 46-year-old Bernalillo County man tested positive for the virus infection. Health officials say the man got the virus when traveling to Central America. “We have anticipated that travel-related cases would be identified in New Mexico,” said Department of Health Deputy Secretary Lynn Gallagher. “We have been working closely with CDC to prepare for Zika cases in New Mexico.” The infected man returned from El Salvador at the beginning of February. He felt sick and went to his doctor, after experiencing the typical Zika virus symptoms. “Typically people experience a mild rash, maybe some joint pains, some red eyes, conjunctivitis, and sometimes fever, headache and muscle pain,” said New Mexico Department of Heath Physician Dr. Fermin Arguello. The man’s doctor suspected he had Zika. He reported it to the New Mexico Department of Health. They sent the man’s blood to Colorado to be tested by the CDC. Those test results just came back as positive. Officials say the man is doing fine now, but they did caution him about the possibility of spreading the virus through sexual activity. Officials say there is no reason to believe anyone else has been infected. Because the man contracted the virus in Central America, and no mosquitoes here in New Mexico have tested positive for carrying it, there is no reason for residents to panic. “The risk for Zika in New Mexico is absolutely minimal. For the people who live here in New Mexico the risk for Zika, exposure and infection, are for those who travel to these areas,” said Dr. Arguello. Officials say anyone who feels ill and has recently traveled to an infected country should see a doctor. For healthy adults the virus is not very serious but it has been linked to birth defects and outcomes. Pregnant women have been urged not to travel to infected countries and other precautions are suggested by the CDC. Other travelers have also been warned to proceed with caution when traveling. To learn more about travel restrictions, click here. The virus can be transmitted by mosquitoes and through semen. The CDC reports that as of March 16, there have been 258 cases of Zika virus infection reported in the United States. Of those 258 travel-associated infections, 18 are in pregnant women and 6 were sexually transmitted. Department of Health officials and a representative from the governor’s office will travel to Atlanta to meet with CDC officials in April to learn more about the virus and how to handle positive cases. http://krqe.com/2016/03/18/new-mexico-department-of-health-officials-confirm-the-first-case-of-zika-virus-in-state/

PANAMA CITY, KOMPAS.com - The medical team in Panama City, Panama which identifies a baby born with a rare brain disorder, the condition is associated with the suspect virus spread zika. As quoted by news agency AFP on Saturday (19/03/2016), if true, then this finding will be the first time this has happened outside Brazil. Based on the research in the Gorgas Memorial Institute, found traces of the virus in the umbilical cord to the baby. the baby was born on Tuesday, with the condition of head shrinking known as called microcephaly . Also found deformation of the skull called encephalocele . The baby died four hours after birth.As most people infected zika, the child's mother is also never reported any abnormalities during pregnancy. Earlier, a surge in cases of microcephaly in Brazil has prompted physicians to investigate the relationship between the birth defects with the outbreak of the virus spread zika. Although the mosquitoes that spread the virus to spread throughout Latin America, but until now has not been found in cases of microcephaly outside Brazil who tested positive for zika. http://internasional.kompas.com/read/2016/03/19/15295321/Di.Panama.Ditemukan.Bayi.dengan.Microcephaly.Diduga.Terjangkit.Zika.

Dies first baby with microcephaly in Panama after alert zikaMarch 18, 2016 - 8:58 pm Panama recorded the first death of a baby with microcephaly, whose mother tested positive for Zika, after an alert is decreed by the presence of the virus in the country, reported Friday health authorities. The fatal victim is a baby who was born and died Thursday. "We are saddened by this information, but unfortunately had already warned that this was a matter of time," said National Director of Health, Itza Barahona, in a press conference. According to health authorities the baby's mother is from La Chorrera, 30 kilometers west of the Panamanian capital and had not shown symptoms of Zika virus. However, after you had tests his umbilical cord and tested positive for the virus. Probably the mother became pregnant last August, indicating that "somehow the virus was already circulating in the country before the outbreak had detected" in the indigenous region of Guna Yala, Barahona said. "This is a story that we must alert and attract attention," he added. On February 16 the Panamanian government declared a health alert throughout the country to combat zika, which allowed him to borrow up to 10 million dollars to fight the mosquito that transmits the disease. The first cases were all in the indigenous region of Guna Yala, so the government declared an alert in that area of the country in December. However, the virus has spread throughout the country. Earlier this month, Health Minister Javier Terrientes said three pregnant women had acquired Zika. The zika is transmitted by the Aedes aegypti mosquito and is suspected virus infection causes microcephaly, an irreversible congenital malformation in the fetus. http://800noticias.com/muere-primer-bebe-con-microcefalia-en-panama-tras-alerta-por-zika

Dies first baby with microcephaly alert after zika in PanamaMARCH 19, 2016 Panama recorded the first death of a baby with microcephaly, whose mother tested positive for Zika, after an alert is decreed by the presence of the virus in the country, reported Friday health authorities. The fatal victim is a baby who was born and died last Thursday. "We are saddened by this information, but unfortunately had already warned that this was a matter of time" , said the National Director of Health, Itza Barahona, in a press conference. According to health authorities the baby's mother is from La Chorrera, 30 kilometers west of the Panamanian capital and had not shown symptoms of Zika virus. However, after you had tests his umbilical cord and tested positive for the virus. Probably the mother became pregnant last August, indicating that "somehow the virus was already circulating in the country before the outbreak had detected" in the indigenous region of Guna Yala, Barahona said. "This is a story that we must alert and attract attention," he added. On February 16 the Panamanian government declared a health alert throughout the country to combat zika , which allowed him to borrow up to 10 million dollars to fight the mosquito that transmits the disease. You may want → Medical clinic specializing in marijuana inaugurated amid fierce debate legalization in Chile The first cases were all in the indigenous region of Guna Yala , so the government declared an alert in that area of the country in December. However, the virus has spread throughout the country. Earlier this month, Health Minister Javier Terrientes said three pregnant women had acquired Zika. The zika is transmitted by the Aedes aegypti mosquito and suspected virus infection causes microcephaly , an irreversible congenital malformation in the fetus. http://www.aker.com.ve/2016/03/19/muere-primer-bebe-con-microcefalia-tras-alerta-por-zika-en-panama/?utm_source=twitterfeed&utm_medium=twitter&ckattempt=1

Newborn with microcephaly is first fatality of zika in PanamaSource: EFE 03/18/2016 8:35 PM referential4A newborn with microcephaly associated zika became the first death from the virus in Panama, health authorities reported today. "There was no history that she (the mother) was sick," he said at a press conference the director of Health, Itza Barahona de Mosca. The baby was born Thursday at a hospital in Panama City with a "severe malformation incompatible with life" had been detected a few days before. The newborn barely survived the first four hours and analysis of umbilical cord was infected have shown that zika, although tests have been negative mother, Barahona said Mosca. "The fact that the child is infected means that the mother probably was at some point during pregnancy, although it should not have symptoms, since 80% of those infected are asymptomatic," said the official. The woman, according to estimates by the authorities, had become infected in August 2015, which shows that "the virus was circulating in the country before we detect the outbreak" last December, recognized the director of the Ministry of Health. "It was a matter of time that there was any birth affected by microcephaly or neurological disorder in our country," he admitted. Currently, there are 134 cases of zika in the country, among which is a pregnant woman whose fetus has no symptoms of microcephaly. Also, 2 people suffering from Guillain-Barre syndrome, with mild symptoms, according to the Panamanian ministry. "For zika no vaccines, no medicines. The best way to avoid this is to eliminate mosquito breeding sites," Barahona de Mosca recommended. The zika transmits the Aedes aegypti mosquito, which also transmits dengue fever chikungunya and in other countries there is also evidence of transmission through sex. The Government of Panama declared a month ago a national health alert to the risk of spreading the virus, because until then it was contained in the indigenous region Guna Yala, bordering Colombia, where the first case was detected in December 2015. Virus Zika currently circulating in much of Latin and although causes mild symptoms in most infected, the great fear has to do with its likely connection with cases of microcephaly and neurological syndrome Guillain-Barre syndrome. http://globovision.com/article/recien-nacido-con-microcefalia-es-primera-victima-mortal-del-zika-en-panama

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