niman

DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3125.70.000000e+001698/1701 (99%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3105.30.000000e+001694/1701 (99%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3083.20.000000e+001690/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001688/1702 (99%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1701 (99%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001680/1698 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3029.60.000000e+001679/1699 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)3024.10.000000e+001679/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)3024.10.000000e+001679/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3024.10.000000e+001680/1702 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001679/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001677/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001677/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2994.50.000000e+001673/1699 (98%)EPI671792A/swine/Illinois/A01857433/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI645058A/swine/Indiana/A01260926/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)2989.00.000000e+001672/1699 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2985.30.000000e+001671/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2985.30.000000e+001671/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001671/1699 (98%)

LOCUS KU160699 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01944727/2015(mixed)) clone H3 segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU160699 VERSION KU160699.1 GI:960314548 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01944727/2015(mixed)) ORGANISM Influenza A virus (A/swine/North Carolina/A01944727/2015(mixed)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (17-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01944727/2015(mixed))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01944727/2015" /serotype="mixed" /isolation_source="nasal swab" /host="swine" /db_xref="taxon:1757152" /segment="4" /clone="H3" /country="USA: North Carolina" /collection_date="16-Oct-2015" /note="mixed infection: H1H3,N1N2" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83344.1" /db_xref="GI:960314549" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRGSV KSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAIDQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTLDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01944727.4a" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctttatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggtgttgc tcaagacgga tcaagctatg cctgcagaag gggttctgtt 481 aaaagtttct ttagtagatt aaattggttg tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattat acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag ggttatagtc 661 tcaaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtgagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc gaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa atttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacacttg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctgggtttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

AlignSegment-IDNameScoreE-ValueIdentityEPI499985A/swine/North Carolina/A01394918/2013 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499701A/swine/North Carolina/A01290729/2013 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI487964A/swine/North Carolina/A01290565/2013 (A/H0) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI502663A/swine/Illinois/A01290887/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI487213A/swine/North Carolina/A01290534/2013 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI531049A/swine/North Carolina/A01410511/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI509545A/swine/North Carolina/A01410024/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI509540A/swine/North Carolina/A01290805/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI509529A/swine/North Carolina/A01290797/2013 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI507277A/swine/North Carolina/A01409655/2014 (A/H1N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI492430A/swine/North Carolina/A01290458/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI492403A/swine/North Carolina/A01290462/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI476512A/swine/North Carolina/A01290349/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI451188A/swine/North Carolina/A01432634/2013 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI502715A/swine/North Carolina/A01290800/2013 (A/H1N2) segment 7 (MP)1783.10.000000e+00976/982 (99%)EPI623628A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531067A/swine/North Carolina/A01410520/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531058A/swine/North Carolina/A01410535/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531052A/swine/North Carolina/A01410554/2014 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531046A/swine/North Carolina/A01475277/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531010A/swine/North Carolina/A01410555/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI510222A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI510180A/swine/North Carolina/A01410205/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505101A/swine/North Carolina/A01290956/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499665A/swine/North Carolina/A01290725/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499656A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492427A/swine/North Carolina/A01290473/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492393A/swine/North Carolina/A01290447/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI531073A/swine/North Carolina/A01475272/2014 (A/H1N1) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI568694A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI530295A/swine/North Carolina/A01410422/2014 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI508851A/swine/North Carolina/A01410136/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI499637A/swine/North Carolina/A01290636/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI467465A/swine/North Carolina/A01432952/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI459659A/swine/Pennsylvania/A01380412/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542513A/swine/North Carolina/A01476095/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI532396A/swine/North Carolina/A01410625/2014 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531079A/swine/North Carolina/A01410533/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531007A/swine/North Carolina/A01475257/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI531001A/swine/North Carolina/A01475256/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI530317A/swine/North Carolina/A01410329/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510231A/swine/North Carolina/A01409950/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI508877A/swine/North Carolina/A01410180/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI504902A/swine/Illinois/A01411204/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI502700A/swine/North Carolina/A01290857/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI502651A/swine/North Carolina/A01290856/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI489709A/swine/South Carolina/A01394262/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487968A/swine/North Carolina/A01291004/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI463707A/swine/North Carolina/A01432766/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI647515A/swine/North Carolina/A02034477/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI645054A/swine/Illinois/A02090072/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI641468A/swine/Illinois/A01820879/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI621368A/swine/Illinois/A01820513/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI615355A/swine/Illinois/A01820485/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI600454A/swine/North Carolina/A01476924/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI600427A/swine/North Carolina/A01476896/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI600358A/swine/North Carolina/A01476968/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI600352A/swine/North Carolina/A01476902/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI597648A/swine/North Carolina/A01478870/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI586022A/swine/North Carolina/A01555546/2015 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI559565A/swine/North Carolina/A01476557/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI559559A/swine/North Carolina/A01478107/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI558830A/swine/North Carolina/A01476722/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI557793A/swine/North Carolina/A01476778/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI557792A/swine/North Carolina/A01476736/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI557791A/swine/North Carolina/A01476738/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI557789A/swine/North Carolina/A01476775/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545821A/swine/North Carolina/A01476359/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI532369A/swine/North Carolina/A01410640/2014 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI438228A/swine/Indiana/A01260209/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI542522A/swine/North Carolina/A01477162/2014 (A/H0) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI672971A/swine/North Carolina/A01945307/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI672959A/swine/North Carolina/A01945329/2015 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI672860A/swine/Illinois/A02090702/2015 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI669147A/swine/North Carolina/A01770469/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI663354A/swine/North Carolina/A02025520/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI663315A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI653881A/swine/North Carolina/A02025523/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI647586A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI612564A/swine/North Carolina/A01554473/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI597672A/swine/North Carolina/A01476862/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI597645A/swine/North Carolina/A01476810/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI586055A/swine/North Carolina/A01555549/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI584851A/swine/Nebraska/A01489870/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI584830A/swine/Nebraska/A01489868/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI584810A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI573008A/swine/North Carolina/A01840074/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI568715A/swine/North Carolina/A01555137/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI559598A/swine/North Carolina/A01477720/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI559589A/swine/North Carolina/A01476564/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545845A/swine/North Carolina/A01476462/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI542516A/swine/North Carolina/A01411902/2014 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI539063A/swine/Nebraska/A01501767/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI532390A/swine/Illinois/A01411761/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI526872A/swine/Minnesota/A01480518/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI505095A/swine/Nebraska/A01409647/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI501539A/swine/South Dakota/A01366063/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492657A/swine/Nebraska/A01394342/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492409A/swine/North Carolina/A01290442/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI467890A/swine/Nebraska/A01397576/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401625A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398122A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1757.30.000000e+00971/981 (98%)EPI502568A/swine/Nebraska/A01395675/2013 (A/H3N2) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI673003A/swine/North Carolina/120138/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI669232A/swine/North Carolina/A02025765/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI653895A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI612561A/swine/North Carolina/A02076144/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI596341A/swine/North Carolina/A01841556/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI596335A/swine/North Carolina/A01841555/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI593903A/swine/North Carolina/A01840366/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI586129A/swine/North Carolina/A01555663/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI573798A/swine/North Carolina/A01840320/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI568716A/swine/North Carolina/A01555212/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI568693A/swine/North Carolina/A01840329/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI560137A/swine/Nebraska/A01565950/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI558833A/swine/North Carolina/A01476714/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI548246A/swine/North Carolina/A01476535/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI531013A/swine/North Carolina/A01475255/2014 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI509759A/swine/Minnesota/A01366992/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI502690A/swine/North Carolina/A01290799/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI499988A/swine/Nebraska/A01394567/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI487955A/swine/Indiana/A01260366/2013 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI476530A/swine/Illinois/A01398587/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2540.30.000000e+001398/1410 (99%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2534.70.000000e+001397/1410 (99%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2529.20.000000e+001396/1410 (99%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI623627A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001395/1411 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI672888A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528783A/swine/Indiana/A01260479/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001394/1411 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2508.90.000000e+001390/1406 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2507.00.000000e+001392/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001393/1411 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397561A/Wisconsin/29/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397445A/Wisconsin/31/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397439A/Wisconsin/30/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397411A/Michigan/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397387A/Indiana/49/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397214A/Pennsylvania/17/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397212A/Indiana/115/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397124A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396245A/Indiana/125/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396229A/Indiana/147/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396222A/Indiana/57/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395942A/swine/Indiana/A00968373/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395929A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395893A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395269A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394076A/Wisconsin/27/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394068A/Pennsylvania/11/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3098.00.000000e+001693/1701 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3094.30.000000e+001692/1701 (99%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3092.40.000000e+001692/1701 (99%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3088.70.000000e+001691/1701 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3086.90.000000e+001691/1701 (99%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1701 (99%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1701 (99%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1701 (99%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1701 (99%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3057.30.000000e+001683/1698 (99%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1701 (99%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1701 (99%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001686/1702 (99%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3046.20.000000e+001682/1699 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)3040.70.000000e+001682/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001683/1702 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3040.70.000000e+001682/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1701 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001682/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001677/1699 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI558822A/swine/Indiana/A01476743/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)3011.20.000000e+001676/1699 (98%)EPI671792A/swine/Illinois/A01857433/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI645058A/swine/Indiana/A01260926/2015 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)3005.60.000000e+001675/1699 (98%)EPI573439A/swine/Missouri/A01555163/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)3001.90.000000e+001674/1699 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001674/1699 (98%)

LOCUS KU143619 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/North Carolina/A01857750/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU143619 VERSION KU143619.1 GI:960313421 KEYWORDS . SOURCE Influenza A virus (A/swine/North Carolina/A01857750/2015(H3N2)) ORGANISM Influenza A virus (A/swine/North Carolina/A01857750/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (12-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/North Carolina/A01857750/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/North Carolina/A01857750/2015" /serotype="H3N2" /isolation_source="nasal swab" /host="swine" /db_xref="taxon:1755979" /segment="4" /country="USA: North Carolina" /collection_date="13-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83224.1" /db_xref="GI:960313422" /translation="MKTIIAFSCILCLIFAQKPPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQNSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACKRGSV KSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGESSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKSVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01857750.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacctccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacacc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 aattcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcaaaag gggttctgtt 481 aaaagtttct ttagtagatt gaattggtta tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtggggaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa atttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcttgca taggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaagt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA released 2015 North Carolina swine sequences that match 2012 human cases.

AlignSegment-IDNameScoreE-ValueIdentityEPI673002A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 7 (MP)1810.80.000000e+00981/982 (99%)EPI672998A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 7 (MP)1810.80.000000e+00981/982 (99%)EPI560131A/swine/Iowa/A01565921/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1805.30.000000e+00980/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1801.60.000000e+00979/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI559027A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI550298A/swine/Iowa/A01410995/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI545815A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI542565A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI542532A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI542526A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI532378A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI531061A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI531031A/swine/Illinois/A01475266/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI528443A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI509751A/swine/Iowa/13H068/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI509744A/swine/Iowa/13H081/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI509737A/swine/Iowa/13H075/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI509723A/swine/Iowa/13H082/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI505077A/swine/Illinois/A01409675/2014 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI501536A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI499940A/swine/Iowa/13H069/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI499924A/swine/Iowa/13H094/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI493014A/swine/Kansas/A01377090/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI472185A/swine/Iowa/A01432840/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI467959A/swine/Ohio/A01351573/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI466711A/Illinois/03/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI465380A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI464501A/Indiana/04/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI464498A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI463731A/swine/Iowa/A01432784/2013 (A/H1N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI446736A/swine/Ohio/A01349615/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00978/981 (99%)EPI573013A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 7 (MP)1796.10.000000e+00978/982 (99%)EPI557797A/swine/North Carolina/A01476771/2014 (A/H0) segment 7 (MP)1796.10.000000e+00978/982 (99%)EPI394917A/Ohio/69/2012 (A/H3N2) segment 7 (MP)1796.10.000000e+00978/982 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI558878A/swine/Nebraska/A01477775/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI557790A/swine/Indiana/A01476743/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI550131A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI548261A/swine/Iowa/A01476428/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI545409A/swine/Iowa/A01476267/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI542449A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI538957A/swine/South Dakota/A01481811/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI538672A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI534946A/swine/Iowa/A01501240/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI530308A/swine/North Carolina/A01410321/2014 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI528007A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI528003A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI528000A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI527093A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI509772A/swine/Indiana/A01260424/2013 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI502748A/swine/USA/A01409276/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI502745A/swine/Iowa/A01290820/2013 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI493691A/swine/Iowa/13E045/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI492999A/swine/Illinois/A01394861/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI492969A/swine/Illinois/A01394862/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI487345A/swine/Illinois/A01392224/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI467962A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI461015A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI460762A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00974/976 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI433280A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI427192A/swine/Indiana/A01260169/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI406574A/swine/Iowa/A01203863/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI406471A/swine/Indiana/A01260041/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI406468A/swine/Indiana/A01260029/2012 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI401623A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI401619A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI400107A/swine/Indiana/A00968308/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI400104A/swine/Indiana/A00968397/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI398529A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI398503A/swine/Ohio/A01133466/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI398150A/swine/Ohio/25/2012 (A/H1N1) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI398039A/West Virginia/09/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI398038A/Ohio/38/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397940A/Ohio/81/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397921A/Ohio/18/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397746A/Ohio/87/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397558A/Wisconsin/29/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397543A/Ohio/83/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397527A/Ohio/47/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397519A/Ohio/44/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397499A/Indiana/104/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397407A/Michigan/16/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397399A/Indiana/99/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397391A/Indiana/93/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI397380A/Indiana/138/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)

AlignSegment-IDNameScoreE-ValueIdentityEPI672997A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI669265A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI669263A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001392/1411 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001391/1411 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI573600A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573810A/swine/Indiana/A01840344/2014 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2484.90.000000e+001388/1410 (98%)EPI672888A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI647585A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI641459A/swine/Minnesota/A01847917/2015 (A/H1N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001390/1412 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545417A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001389/1411 (98%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI488006A/swine/USA/A01291038/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI440750A/swine/Indiana/A01432492/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2481.20.000000e+001385/1406 (98%)EPI663314A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI557543A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001375/1392 (98%)EPI557533A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001375/1392 (98%)EPI545859A/swine/North Carolina/A01476419/2014 (A/H0) segment 6 (NA)2477.50.000000e+001389/1412 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI672996A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 4 (HA)3142.30.000000e+001701/1701 (100%)EPI669262A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 4 (HA)3131.20.000000e+001699/1701 (99%)EPI669264A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 4 (HA)3129.30.000000e+001698/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001677/1702 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001674/1699 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001675/1702 (98%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)2979.80.000000e+001669/1698 (98%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)2950.20.000000e+001666/1701 (97%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2942.80.000000e+001665/1701 (97%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2941.00.000000e+001664/1700 (97%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2939.10.000000e+001663/1699 (97%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1701 (97%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)

LOCUS KU143598 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/Minnesota/A01940814/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU143598 VERSION KU143598.1 GI:960313291 KEYWORDS . SOURCE Influenza A virus (A/swine/Minnesota/A01940814/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Minnesota/A01940814/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) CONSRTM Swine Surveillance TITLE Direct Submission JOURNAL Submitted (11-NOV-2015) NAHLN Voluntary Swine Influenza Surveillance, USDA, 1920 Dayton Ave., Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Minnesota/A01940814/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Minnesota/A01940814/2015" /serotype="H3N2" /host="swine" /db_xref="taxon:1755916" /segment="4" /country="USA: Minnesota" /collection_date="19-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83196.1" /db_xref="GI:960313292" /translation="MKTIIAFSCVLCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRDSV NSFFSRLNWLHNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPDGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR SEALNNRFQIKGIQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01940814.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcgtt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgata acagcatggc aacgctgtgc ctaggacacc acgcagtacc aaacggaaca 121 ttagtgaaaa caatcacgga tgatcaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa ttcttgatgg aaaaaattgc 241 acattgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac tcaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag ggattctgtt 481 aacagtttct ttagtagatt gaattggttg cataacttaa attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtttcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca caggaaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaatca tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 gatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 aacaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga tatgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatggc 1501 acttatgacc atgatatata cagaagcgag gcattaaata atcggttcca gatcaaaggt 1561 attcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

AlignSegment-IDNameScoreE-ValueIdentityEPI673002A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI672998A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI560131A/swine/Iowa/A01565921/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1799.80.000000e+00979/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI559027A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI550298A/swine/Iowa/A01410995/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI545815A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542565A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542532A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI542526A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI532378A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI531061A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI531031A/swine/Illinois/A01475266/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI528443A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509751A/swine/Iowa/13H068/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509744A/swine/Iowa/13H081/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509737A/swine/Iowa/13H075/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI509723A/swine/Iowa/13H082/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI505077A/swine/Illinois/A01409675/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI502748A/swine/USA/A01409276/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI501536A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI499940A/swine/Iowa/13H069/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI499924A/swine/Iowa/13H094/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI493014A/swine/Kansas/A01377090/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI472185A/swine/Iowa/A01432840/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI467959A/swine/Ohio/A01351573/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI466711A/Illinois/03/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI465380A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI464501A/Indiana/04/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI464498A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI463731A/swine/Iowa/A01432784/2013 (A/H1N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI446736A/swine/Ohio/A01349615/2013 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1796.10.000000e+00978/981 (99%)EPI573013A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI557797A/swine/North Carolina/A01476771/2014 (A/H0) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI394917A/Ohio/69/2012 (A/H3N2) segment 7 (MP)1794.20.000000e+00978/982 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI558878A/swine/Nebraska/A01477775/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI557790A/swine/Indiana/A01476743/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI550131A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI548261A/swine/Iowa/A01476428/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI545409A/swine/Iowa/A01476267/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI542449A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI538957A/swine/South Dakota/A01481811/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI538672A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI534946A/swine/Iowa/A01501240/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI530308A/swine/North Carolina/A01410321/2014 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI528007A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI528003A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI528000A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI527093A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI509772A/swine/Indiana/A01260424/2013 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI502745A/swine/Iowa/A01290820/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI493691A/swine/Iowa/13E045/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492999A/swine/Illinois/A01394861/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492969A/swine/Illinois/A01394862/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI487345A/swine/Illinois/A01392224/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI467962A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI461015A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI460762A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00974/976 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433280A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI427192A/swine/Indiana/A01260169/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI415265A/swine/Ohio/11SW115/2011 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI406574A/swine/Iowa/A01203863/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI406471A/swine/Indiana/A01260041/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI406468A/swine/Indiana/A01260029/2012 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI401623A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI401619A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI400107A/swine/Indiana/A00968308/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI400104A/swine/Indiana/A00968397/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398529A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398503A/swine/Ohio/A01133466/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398150A/swine/Ohio/25/2012 (A/H1N1) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398039A/West Virginia/09/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI398038A/Ohio/38/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397940A/Ohio/81/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397921A/Ohio/18/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397746A/Ohio/87/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397558A/Wisconsin/29/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397543A/Ohio/83/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397527A/Ohio/47/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397519A/Ohio/44/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397499A/Indiana/104/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397407A/Michigan/16/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397399A/Indiana/99/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI397391A/Indiana/93/2012 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)

AlignSegment-IDNameScoreE-ValueIdentityEPI672997A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 6 (NA)2604.90.000000e+001410/1410 (100%)EPI669265A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI669263A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 6 (NA)2593.80.000000e+001408/1410 (99%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2523.60.000000e+001395/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI593957A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2518.10.000000e+001394/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI620515A/swine/Iowa/A02076659/2015 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI550297A/swine/Iowa/A01410995/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI548260A/swine/Iowa/A01476428/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI542549A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI612572A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600450A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600348A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001392/1411 (98%)EPI573453A/swine/Iowa/A01555142/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573036A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI573021A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559531A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI559026A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558840A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558835A/swine/North Carolina/A01476730/2014 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558823A/swine/Indiana/A01476743/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI558820A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI600345A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI598965A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001391/1411 (98%)EPI584809A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI573600A/swine/Indiana/A01840253/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI542525A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI669248A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 6 (NA)2490.40.000000e+001389/1410 (98%)EPI669155A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573810A/swine/Indiana/A01840344/2014 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573808A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI573794A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI559549A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2484.90.000000e+001388/1410 (98%)EPI672888A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI663381A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI647585A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI641459A/swine/Minnesota/A01847917/2015 (A/H1N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI623701A/swine/Indiana/A01260863/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI620491A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597662A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI597656A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI586152A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545817A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001390/1412 (98%)EPI545814A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI545417A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001389/1411 (98%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI488006A/swine/USA/A01291038/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI440750A/swine/Indiana/A01432492/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI393526A/West Virginia/15/2012 (A/H3N2) segment 6 (NA)2481.20.000000e+001385/1406 (98%)EPI663314A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI647505A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI590660A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI557543A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001375/1392 (98%)EPI557533A/Wisconsin/24/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001375/1392 (98%)EPI545859A/swine/North Carolina/A01476419/2014 (A/H0) segment 6 (NA)2477.50.000000e+001389/1412 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI672996A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 4 (HA)3142.30.000000e+001701/1701 (100%)EPI669262A/swine/Minnesota/A01940153/2015 (A/H3N2) segment 4 (HA)3131.20.000000e+001699/1701 (99%)EPI669264A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 4 (HA)3129.30.000000e+001698/1701 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3037.00.000000e+001682/1701 (98%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1701 (98%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001677/1702 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001674/1699 (98%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001675/1702 (98%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1701 (98%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)2992.70.000000e+001674/1701 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1701 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001673/1701 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1701 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)2981.60.000000e+001672/1701 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)2979.80.000000e+001671/1701 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)2979.80.000000e+001669/1698 (98%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)2977.90.000000e+001671/1701 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)2976.10.000000e+001671/1701 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)2974.20.000000e+001670/1701 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)2972.40.000000e+001670/1701 (98%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)2970.50.000000e+001670/1701 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)2966.80.000000e+001669/1701 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001670/1702 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)2965.00.000000e+001669/1701 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)2963.10.000000e+001668/1701 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)2961.30.000000e+001668/1701 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)2959.50.000000e+001668/1701 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)2955.80.000000e+001667/1701 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)2953.90.000000e+001667/1701 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)2950.20.000000e+001666/1701 (97%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2950.20.000000e+001666/1700 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)2948.40.000000e+001666/1701 (97%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2944.70.000000e+001665/1700 (97%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2942.80.000000e+001665/1701 (97%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2941.00.000000e+001664/1700 (97%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2939.10.000000e+001663/1699 (97%)EPI573051A/swine/Iowa/A01840061/2014 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1701 (97%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)2939.10.000000e+001664/1700 (97%)

LOCUS KU143604 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/Minnesota/A01940765/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU143604 VERSION KU143604.1 GI:960313322 KEYWORDS . SOURCE Influenza A virus (A/swine/Minnesota/A01940765/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Minnesota/A01940765/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) CONSRTM Swine Surveillance TITLE Direct Submission JOURNAL Submitted (11-NOV-2015) NAHLN Voluntary Swine Influenza Surveillance, USDA, 1920 Dayton Ave., Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Minnesota/A01940765/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Minnesota/A01940765/2015" /serotype="H3N2" /host="swine" /db_xref="taxon:1755915" /segment="4" /country="USA: Minnesota" /collection_date="19-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83204.1" /db_xref="GI:960313323" /translation="MKTIIAFSCVLCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGNLEFTQESFNWTGVAQDGSSYACRRDSV NSFFSRLNWLHNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKSSIMRSDAHIDECNSECITPDGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMNKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR SEALNNRFQIKGIQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01940765.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcgtt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgata acagcatggc aacgctgtgc ctaggacacc acgcagtacc aaacggaaca 121 ttagtgaaaa caatcacgga tgatcaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa ttcttgatgg aaaaaattgc 241 acattgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcaacc tggaatttac tcaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag ggattctgtt 481 aacagtttct ttagtagatt gaattggttg cataacttaa attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtgtttcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca caggaaatct aattgcccct cggggttact tcaaaataca aagtgggaaa 841 agctcaatca tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 gatggaagca ttcccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 aacaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga tatgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatggc 1501 acttatgacc atgatatata cagaagcgag gcattaaata atcggttcca gatcaaaggt 1561 attcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcattta a

USDA releases 2015 Minnesota swine sequences that match 2012 cases.

AlignSegment-IDNameScoreE-ValueIdentityEPI669181A/swine/Indiana/A01260958/2015 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI600387A/swine/Indiana/A01477819/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI572999A/swine/Arkansas/A01840027/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI669717A/swine/Indiana/14TOSU0001/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669714A/swine/Ohio/14TOSU0158/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669687A/swine/Ohio/14TOSU0566/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669679A/swine/Indiana/14TOSU8050/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669678A/swine/Indiana/14TOSU0342/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669663A/swine/Ohio/14TOSU21817/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669653A/swine/Indiana/14TOSU8041/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669637A/swine/Ohio/14TOSU0422/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669633A/swine/Ohio/14TOSU0463/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669624A/swine/Ohio/14TOSU21811/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669608A/swine/Ohio/14TOSU0563/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669591A/swine/Indiana/14TOSU0011/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669541A/swine/Ohio/14TOSU0435/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669531A/swine/Ohio/14TOSU21800/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669469A/swine/Indiana/14TOSU0343/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669423A/swine/Ohio/14TOSU21805/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669419A/swine/Ohio/14TOSU21815/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669407A/swine/Indiana/14TOSU0235/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669397A/swine/Indiana/14TOSU3013/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669396A/swine/Indiana/14TOSU8019/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669387A/swine/Ohio/14TOSU21806/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669386A/swine/Ohio/14TOSU21808/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669364A/swine/Indiana/14TOSU0374/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669330A/swine/Ohio/14TOSU0143/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669327A/swine/Indiana/14TOSU0226/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669324A/swine/Indiana/14TOSU0231/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669319A/swine/Indiana/14TOSU2891/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669315A/swine/Ohio/14TOSU21839/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669311A/swine/Ohio/14TOSU21812/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669307A/swine/Ohio/14TOSU21816/2014 (A/H0) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669304A/swine/Ohio/14TOSU21801/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI669301A/swine/Indiana/14TOSU0364/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620531A/swine/Minnesota/A01847108/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620495A/swine/Iowa/A02077555/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI590775A/swine/South Dakota/A01841915/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI568724A/swine/Arkansas/A01840187/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI568718A/swine/Illinois/A01555180/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI568688A/swine/Arkansas/A01840185/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI546925A/swine/North Dakota/A01104084/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI545812A/swine/Indiana/A01476391/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI545372A/swine/Iowa/A01476238/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI545270A/swine/Minnesota/A01565076/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI545142A/swine/Indiana/A01260591/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI544948A/swine/Minnesota/A01503773/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI544945A/swine/Minnesota/A01503777/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI544942A/swine/Minnesota/A01503779/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI544810A/swine/Minnesota/A01503781/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI620592A/swine/Illinois/A02076652/2015 (A/H3N2) segment 7 (MP)1783.10.000000e+00976/982 (99%)EPI600463A/swine/Illinois/A01555038/2014 (A/H3N2) segment 7 (MP)1783.10.000000e+00976/982 (99%)EPI573483A/swine/Arkansas/A01840240/2014 (A/H3N2) segment 7 (MP)1783.10.000000e+00976/982 (99%)EPI573465A/swine/Arkansas/A01555210/2014 (A/H3N2) segment 7 (MP)1783.10.000000e+00976/982 (99%)EPI669694A/swine/Ohio/14TOSU0133/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI669667A/swine/Ohio/14TOSU21818/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI669455A/swine/Indiana/14TOSU0006/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI669295A/swine/Ohio/14TOSU0122/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI641460A/swine/Minnesota/A01847917/2015 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI623677A/swine/Illinois/A01554952/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI586105A/swine/Iowa/A01470314/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI545830A/swine/Iowa/A01476395/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI545775A/swine/Minnesota/A01565290/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI533920A/swine/Iowa/A01481221/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI620625A/swine/Arkansas/A01554688/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI597651A/swine/Iowa/A01476858/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI573343A/swine/Minnesota/A01567014/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI548243A/swine/Iowa/A01476456/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI347605A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI663342A/swine/Iowa/A01769394/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI623680A/swine/Iowa/A01822197/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI621569A/swine/Iowa/A01822175/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI621548A/swine/Iowa/A01822205/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI620471A/swine/Iowa/A01847871/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612503A/swine/Minnesota/A01847477/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI612494A/swine/Minnesota/A01847455/2015 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI449017A/swine/Wyoming/A01379346/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433321A/swine/Wyoming/A01444560/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427146A/swine/Maryland/A01444460/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427131A/swine/Wyoming/A01444562/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI406513A/swine/Iowa/A01432069/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI399472A/swine/North Carolina/A01300820/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI395845A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI391459A/swine/Wisconsin/A01203142/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI390675A/swine/Indiana/A01243254/2012 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI383548A/swine/Iowa/A01203503/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI347602A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI346435A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI346427A/Iowa/07/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI346419A/Iowa/09/2011 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI341736A/swine/Iowa/A01049970/2011 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI539162A/Ohio/02/2014 (A/H3N2) segment 7 (MP)1766.50.000000e+00966/971 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI472194A/swine/Iowa/A01432826/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI461427A/swine/Ohio/11SW233/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI461420A/swine/Ohio/11SW149/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI461386A/swine/Ohio/11SW238/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459607A/swine/Ohio/11SW144/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459599A/swine/Ohio/11SW121/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459591A/swine/Ohio/11SW127/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459573A/swine/Ohio/11SW230/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459535A/swine/Ohio/11SW349/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459520A/swine/Ohio/11SW223/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459499A/swine/Ohio/11SW111/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459488A/swine/Ohio/11SW133/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459466A/swine/Ohio/11SW344/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457158A/swine/Korea/CY03-19/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457150A/swine/Korea/CY03-18/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457142A/swine/Korea/CY03-17/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457134A/swine/Korea/CY03-16/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457126A/swine/Korea/CY03-15/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI457118A/swine/Korea/CY03-14/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI453430A/swine/Korea/D79/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI441649A/swine/Iowa/A01445788/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI433310A/swine/Iowa/A01444786/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415974A/swine/Ohio/11SW232/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415966A/swine/Ohio/11SW347/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415958A/swine/Ohio/11SW240/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415950A/swine/Ohio/11SW239/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415942A/swine/Ohio/11SW237/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415926A/swine/Ohio/11SW235/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415918A/swine/Ohio/11SW234/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415904A/swine/Ohio/11SW231/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415896A/swine/Ohio/11SW229/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415888A/swine/Ohio/11SW228/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415880A/swine/Ohio/11SW227/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415871A/swine/Ohio/11SW226/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415862A/swine/Ohio/11SW225/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415853A/swine/Ohio/11SW224/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415846A/swine/Ohio/11SW221/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415838A/swine/Ohio/11SW220/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415830A/swine/Ohio/11SW218/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415812A/swine/Ohio/11SW216/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415804A/swine/Ohio/11SW215/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415796A/swine/Ohio/11SW213/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415779A/swine/Ohio/11SW210/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415771A/swine/Ohio/11SW209/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415762A/swine/Ohio/11SW207/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415745A/swine/Ohio/11SW205/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415737A/swine/Ohio/11SW204/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415720A/swine/Ohio/11SW202/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415685A/swine/Ohio/11SW196/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415617A/swine/Ohio/11SW184/2011 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415573A/swine/Ohio/11SW175/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415556A/swine/Ohio/11SW173/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415548A/swine/Ohio/11SW172/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415497A/swine/Ohio/11SW163/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415481A/swine/Ohio/11SW146/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415473A/swine/Ohio/11SW140/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415465A/swine/Ohio/11SW139/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415457A/swine/Ohio/11SW138/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415449A/swine/Ohio/11SW137/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415441A/swine/Ohio/11SW136/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415433A/swine/Ohio/11SW135/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415425A/swine/Ohio/11SW134/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415415A/swine/Ohio/11SW96/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415411A/swine/Ohio/11SW132/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415403A/swine/Ohio/11SW131/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415395A/swine/Ohio/11SW130/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415387A/swine/Ohio/11SW129/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415379A/swine/Ohio/11SW128/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415371A/swine/Ohio/11SW126/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415365A/swine/Ohio/11SW125/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415357A/swine/Ohio/11SW124/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415349A/swine/Ohio/11SW123/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415341A/swine/Ohio/11SW122/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415313A/swine/Ohio/11SW95/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415289A/swine/Ohio/11SW87/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415257A/swine/Ohio/11SW114/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415249A/swine/Ohio/11SW113/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415241A/swine/Ohio/11SW112/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI415225A/swine/Ohio/11SW108/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI408330A/swine/Indiana/A01432188/2012 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI406668A/swine/Iowa/A01203977/2012 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397414A/Michigan/23/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397342A/Michigan/19/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395346A/Michigan/20/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395287A/Illinois/11/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI391144A/swine/Indiana/A01202621/2011 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI391142A/swine/Indiana/A01202632/2011 (A/H1N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI390882A/swine/Michigan/A01203374/2012 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI390881A/swine/Indiana/A01203372/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI390671A/swine/Indiana/A01243255/2012 (A/H1N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI388330A/Utah/10/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI433327A/swine/Wyoming/A01444566/2013 (A/H3N2) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI620604A/swine/Iowa/A02076786/2015 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI584851A/swine/Nebraska/A01489870/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI584830A/swine/Nebraska/A01489868/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI541963A/Ohio/4319/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00962/967 (99%)EPI539063A/swine/Nebraska/A01501767/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI532390A/swine/Illinois/A01411761/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI527873A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI527116A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI526872A/swine/Minnesota/A01480518/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI505095A/swine/Nebraska/A01409647/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI501539A/swine/South Dakota/A01366063/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI499646A/swine/Iowa/A01290671/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492657A/swine/Nebraska/A01394342/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492356A/swine/Indiana/A00968365/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487955A/swine/Indiana/A01260366/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI487944A/swine/Minnesota/A01394278/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476530A/swine/Illinois/A01398587/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI472154A/swine/Wyoming/A01397389/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI467890A/swine/Nebraska/A01397576/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI464431A/swine/Ohio/A01351184/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI461446A/swine/Wyoming/A01381202/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI453429A/swine/Korea/A18/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451185A/swine/Pennsylvania/A01432652/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451178A/swine/Wyoming/A01379327/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451175A/swine/Wyoming/A01379354/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446733A/swine/Ohio/A01349572/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI438228A/swine/Indiana/A01260209/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI427201A/swine/Indiana/A01260183/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI416865A/swine/Iowa/A01432207/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI415934A/swine/Ohio/11SW236/2011 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI415703A/swine/Ohio/11SW200/2011 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401145A/swine/North Carolina/A01270509/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI399378A/swine/North Carolina/A01300819/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI642512A/Michigan/39/2015 (A/H3N2) segment 6 (NA)2582.70.000000e+001406/1410 (99%)EPI663317A/swine/Illinois/A01770246/2015 (A/H3N2) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI645060A/swine/Indiana/A01260926/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI586039A/swine/Illinois/A01555570/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI584735A/swine/Illinois/A01555638/2015 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI538991A/swine/Michigan/A01410962/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI671793A/swine/Illinois/A01857433/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI573052A/swine/Iowa/A01840061/2014 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI545853A/swine/Iowa/A01476426/2014 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI530300A/swine/Illinois/A01410453/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI530285A/swine/Illinois/A01475190/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI510212A/swine/Illinois/A01409994/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI507285A/swine/Illinois/A01411097/2014 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI505103A/swine/Iowa/A01409518/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI504865A/swine/Illinois/A01411096/2013 (A/H0) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI530310A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI505063A/swine/Illinois/A01409657/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI597689A/swine/Minnesota/A01566287/2014 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI505043A/swine/Illinois/A01410018/2013 (A/H0) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI590498A/swine/Minnesota/A01470654/2015 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI545881A/swine/Minnesota/A01482977/2014 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI545777A/swine/Minnesota/A01565282/2014 (A/H1N2) segment 6 (NA)2499.60.000000e+001392/1411 (98%)EPI542568A/swine/South Dakota/A01482581/2014 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI531098A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI597692A/swine/Minnesota/A01566612/2014 (A/H1N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI559528A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI538921A/swine/Minnesota/A01501738/2014 (A/H3N2) segment 6 (NA)2494.10.000000e+001390/1410 (98%)EPI600310A/swine/Minnesota/A01566625/2014 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI558899A/swine/Iowa/A01566473/2014 (A/H1N2) segment 6 (NA)2488.60.000000e+001389/1410 (98%)EPI647624A/swine/Michigan/A01104086/2015 (A/H0) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI600302A/swine/South Dakota/A01483859/2014 (A/H1N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI586063A/swine/Iowa/A01478820/2015 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI573573A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI531060A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI460388A/swine/Indiana/A01260252/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI460382A/swine/Indiana/A01260284/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI460373A/swine/Indiana/A01260276/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI460367A/swine/Indiana/A01260261/2013 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2483.00.000000e+001388/1410 (98%)EPI533783A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI532377A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI508859A/swine/Illinois/A01410110/2014 (A/H3N2) segment 6 (NA)2479.30.000000e+001387/1410 (98%)EPI623636A/swine/Iowa/A02077681/2015 (A/H1N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI573351A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI545408A/swine/Iowa/A01476267/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI545380A/swine/Iowa/A01476223/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI542531A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI538665A/swine/Iowa/A01410752/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI534948A/swine/Iowa/A01501048/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI510215A/swine/Illinois/A01475015/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI510200A/swine/Illinois/A01410268/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI510191A/swine/Illinois/A01411463/2014 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI510174A/swine/Illinois/A01411461/2014 (A/H0) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI492943A/swine/Iowa/A01365015/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI460391A/swine/Indiana/A01260254/2013 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2477.50.000000e+001387/1410 (98%)EPI532374A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 6 (NA)2473.80.000000e+001386/1410 (98%)EPI530997A/swine/Iowa/A01410600/2014 (A/H3N2) segment 6 (NA)2473.80.000000e+001386/1410 (98%)EPI590795A/swine/Illinois/A01470861/2015 (A/H1N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI574155A/Kansas/A01377457/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI573480A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI559534A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI558882A/swine/North Carolina/A01476771/2014 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI558852A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI558843A/swine/North Carolina/A01477778/2014 (A/H0) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI550294A/swine/Iowa/A01410971/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI542448A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI467963A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI465387A/Indiana/10/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397502A/Indiana/104/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI397403A/Indiana/99/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396298A/Maryland/23/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396207A/Indiana/149/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI396182A/Indiana/77/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI394059A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393518A/Indiana/65/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393297A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI393291A/Indiana/38/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392752A/Indiana/16/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392698A/Indiana/46/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392695A/Indiana/43/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI392691A/Indiana/31/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2471.90.000000e+001386/1410 (98%)EPI586093A/swine/Minnesota/A01489541/2015 (A/H1N2) segment 6 (NA)2468.20.000000e+001386/1411 (98%)EPI395712A/swine/Indiana/A01104016/2012 (A/H3N2) segment 6 (NA)2468.20.000000e+001385/1410 (98%)EPI641618A/swine/Illinois/A02024907/2015 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI621372A/swine/Illinois/A01820488/2015 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI612719A/swine/Illinois/A01820457/2015 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI612549A/swine/Illinois/A01471010/2015 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI597683A/swine/Minnesota/A01566458/2014 (A/H1N2) segment 6 (NA)2466.40.000000e+001386/1411 (98%)EPI573470A/swine/Iowa/A01840226/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI572995A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI550081A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI546918A/swine/Indiana/13TOSU1054/2013 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI546892A/swine/Indiana/13TOSU1141/2013 (A/H0) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI545841A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI542564A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI542552A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI542543A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI538671A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI533959A/swine/Iowa/A01501046/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527842A/swine/Indiana/13TOSU1047/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527152A/swine/Indiana/13TOSU1048/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527135A/swine/Indiana/13TOSU1058/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527073A/swine/Indiana/13TOSU1045/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527050A/swine/Indiana/13TOSU1060/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527008A/swine/Indiana/13TOSU1056/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI527002A/swine/Indiana/13TOSU1049/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI526977A/swine/Indiana/13TOSU1052/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI526940A/swine/Indiana/13TOSU1044/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI526912A/swine/Indiana/13TOSU1053/2013 (A/H1N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI505031A/swine/Illinois/A01409735/2014 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI501537A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI468208A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI468200A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI465419A/Indiana/17/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI460976A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443555A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443111A/swine/Ohio/A01349495/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443101A/swine/Ohio/A01349302/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI443098A/swine/Ohio/A01349305/2013 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI427179A/swine/Indiana/A01260015/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI424075A/swine/Michigan/A01259003/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI414188A/swine/Indiana/A00968394/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI406470A/swine/Indiana/A01260041/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI401610A/swine/Ohio/A00138552/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397384A/Indiana/138/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI397097A/Indiana/103/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396279A/Indiana/144/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI395250A/Indiana/152/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2466.40.000000e+001385/1410 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI559025A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 4 (HA)3088.70.000000e+001691/1700 (99%)EPI545813A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 4 (HA)3088.70.000000e+001691/1700 (99%)EPI559530A/swine/North Carolina/A01476719/2014 (A/H3N2) segment 4 (HA)3077.60.000000e+001689/1700 (99%)EPI532373A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 4 (HA)3072.10.000000e+001688/1700 (99%)EPI573807A/swine/North Carolina/A01840322/2015 (A/H3N2) segment 4 (HA)3068.40.000000e+001687/1700 (99%)EPI597655A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1700 (99%)EPI545840A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1700 (99%)EPI542447A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 4 (HA)3066.60.000000e+001687/1700 (99%)EPI623626A/swine/North Carolina/A02024129/2015 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1700 (99%)EPI574154A/Kansas/A01377457/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1700 (99%)EPI559533A/swine/North Carolina/A01476698/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1700 (99%)EPI531059A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 4 (HA)3061.00.000000e+001686/1700 (99%)EPI572994A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1700 (99%)EPI545416A/swine/North Carolina/A01478000/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1700 (99%)EPI545379A/swine/Iowa/A01476223/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1700 (99%)EPI542551A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1700 (99%)EPI534947A/swine/Iowa/A01501048/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1700 (99%)EPI532376A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 4 (HA)3055.50.000000e+001685/1700 (99%)EPI542524A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 4 (HA)3051.80.000000e+001684/1700 (99%)EPI538664A/swine/Iowa/A01410752/2014 (A/H3N2) segment 4 (HA)3051.80.000000e+001684/1700 (99%)EPI533782A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 4 (HA)3051.80.000000e+001684/1700 (99%)EPI559548A/swine/North Carolina/A01476688/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI558883A/swine/North Carolina/A01476771/2014 (A/H0) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI558842A/swine/North Carolina/A01477778/2014 (A/H0) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI558839A/swine/North Carolina/A01478182/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI558834A/swine/North Carolina/A01476730/2014 (A/H0) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI558819A/swine/North Carolina/A01476734/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI550293A/swine/Iowa/A01410971/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI530996A/swine/Iowa/A01410600/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1700 (99%)EPI542548A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 4 (HA)3046.20.000000e+001683/1700 (99%)EPI586151A/swine/North Carolina/A01555667/2015 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1700 (99%)EPI545858A/swine/North Carolina/A01476419/2014 (A/H0) segment 4 (HA)3044.40.000000e+001683/1700 (99%)EPI545816A/swine/North Carolina/A01476354/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1700 (99%)EPI538670A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1700 (99%)EPI600431A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001682/1700 (98%)EPI597661A/swine/North Carolina/A01476883/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001682/1700 (98%)EPI573035A/swine/North Carolina/A01555111/2014 (A/H3N2) segment 4 (HA)3040.70.000000e+001682/1700 (98%)EPI612571A/swine/North Carolina/A02076180/2015 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI593956A/swine/Minnesota/A01489046/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001683/1701 (98%)EPI584808A/swine/North Carolina/A01841335/2015 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI573818A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI573793A/swine/North Carolina/A01840289/2015 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI573350A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI550296A/swine/Iowa/A01410995/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI548259A/swine/Iowa/A01476428/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI545407A/swine/Iowa/A01476267/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI542563A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI542542A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 4 (HA)3038.90.000000e+001682/1700 (98%)EPI573011A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001681/1700 (98%)EPI542474A/swine/Kansas/018050-1/2014 (A/H3N2) segment 4 (HA)3035.20.000000e+001680/1699 (98%)EPI669154A/swine/North Carolina/A02025678/2015 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI623700A/swine/Indiana/A01260863/2015 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI600344A/swine/North Carolina/A01476954/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI573479A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI573020A/swine/North Carolina/A01840022/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI557544A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI557542A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3033.30.000000e+001681/1700 (98%)EPI620523A/swine/Iowa/A02076873/2015 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1700 (98%)EPI600449A/swine/North Carolina/A01477954/2014 (A/H3N2) segment 4 (HA)3029.60.000000e+001680/1700 (98%)EPI669209A/swine/North Carolina/A01857100/2015 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1700 (98%)EPI623703A/swine/Indiana/A01260882/2015 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1700 (98%)EPI598964A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1700 (98%)EPI558851A/swine/Minnesota/A01477780/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001681/1702 (98%)EPI557534A/Wisconsin/24/2014 (A/H3N2) segment 4 (HA)3027.80.000000e+001680/1700 (98%)EPI672951A/swine/North Carolina/A01945243/2015 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1700 (98%)EPI669247A/swine/North Carolina/A02025897/2015 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1700 (98%)EPI620526A/swine/Iowa/A02077538/2015 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1700 (98%)EPI542530A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1700 (98%)EPI623651A/swine/Illinois/A02076874/2015 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1700 (98%)EPI669224A/swine/North Carolina/A01857097/2015 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI573017A/swine/Ohio/A01840053/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI573003A/swine/Arkansas/A01555074/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI510214A/swine/Illinois/A01475015/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI510211A/swine/Illinois/A01409994/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI510199A/swine/Illinois/A01410268/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI510190A/swine/Illinois/A01411463/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI510173A/swine/Illinois/A01411461/2014 (A/H0) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI507284A/swine/Illinois/A01411097/2014 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI505102A/swine/Iowa/A01409518/2013 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI504864A/swine/Illinois/A01411096/2013 (A/H0) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI460390A/swine/Indiana/A01260254/2013 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1700 (98%)EPI647569A/swine/North Carolina/A02035784/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001677/1700 (98%)EPI600347A/swine/North Carolina/A01476949/2014 (A/H3N2) segment 4 (HA)3014.90.000000e+001677/1700 (98%)EPI590659A/swine/North Carolina/A01841712/2015 (A/H3N2) segment 4 (HA)3014.90.000000e+001677/1700 (98%)EPI669135A/swine/North Carolina/A02025687/2015 (A/H0) segment 4 (HA)3013.00.000000e+001677/1700 (98%)EPI600470A/swine/Arkansas/A01476939/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001677/1700 (98%)EPI573452A/swine/Iowa/A01555142/2014 (A/H3N2) segment 4 (HA)3013.00.000000e+001677/1700 (98%)EPI672887A/swine/North Carolina/A01945112/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI663380A/swine/North Carolina/A02025575/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI663334A/swine/North Carolina/A01770073/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI647584A/swine/North Carolina/A02025402/2015 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI573495A/swine/Indiana/A01840133/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI573486A/swine/Arkansas/A01555162/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI573448A/swine/Indiana/A01840146/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI545852A/swine/Iowa/A01476426/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI538990A/swine/Michigan/A01410962/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI530299A/swine/Illinois/A01410453/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI530284A/swine/Illinois/A01475190/2014 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI508836A/swine/Illinois/A01409932/2014 (A/H0) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI460381A/swine/Indiana/A01260284/2013 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1700 (98%)EPI663367A/swine/North Carolina/A01769650/2015 (A/H0) segment 4 (HA)3007.50.000000e+001675/1698 (98%)EPI573445A/swine/Arkansas/A01840147/2014 (A/H3N2) segment 4 (HA)3007.50.000000e+001676/1700 (98%)EPI508858A/swine/Illinois/A01410110/2014 (A/H3N2) segment 4 (HA)3007.50.000000e+001676/1700 (98%)EPI669236A/swine/North Carolina/A01857103/2015 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI620514A/swine/Iowa/A02076659/2015 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI620490A/swine/North Carolina/A02077505/2015 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI573599A/swine/Indiana/A01840253/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI530309A/swine/North Carolina/A01410529/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI505062A/swine/Illinois/A01409657/2014 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI460387A/swine/Indiana/A01260252/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001677/1701 (98%)EPI460372A/swine/Indiana/A01260276/2013 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1700 (98%)EPI573602A/swine/Indiana/A01840254/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001675/1700 (98%)EPI573000A/swine/Arkansas/A01840096/2014 (A/H3N2) segment 4 (HA)3003.80.000000e+001675/1700 (98%)EPI663313A/swine/North Carolina/A01770059/2015 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1700 (98%)EPI573714A/swine/Kansas/14-032477/2014 (A/H3N2) segment 4 (HA)3001.90.000000e+001675/1700 (98%)EPI669178A/swine/Indiana/A01260958/2015 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI653893A/swine/North Carolina/A02034953/2015 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI647504A/swine/North Carolina/A02034471/2015 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI586038A/swine/Illinois/A01555570/2015 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI584802A/swine/Indiana/A01841389/2015 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI531097A/swine/Minnesota/A01493481/2014 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI505039A/swine/Illinois/A01410018/2013 (A/H0) segment 4 (HA)3000.10.000000e+001675/1700 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)2998.20.000000e+001676/1702 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)2998.20.000000e+001676/1702 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)2998.20.000000e+001676/1702 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)2998.20.000000e+001676/1702 (98%)EPI584734A/swine/Illinois/A01555638/2015 (A/H3N2) segment 4 (HA)2994.50.000000e+001674/1700 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI388332A/Utah/10/2012 (A/H3N2) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI342603A/swine/NY/A01104005/2011 (A/H3N2) segment 4 (HA)2992.70.000000e+001675/1702 (98%)EPI642513A/Michigan/39/2015 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1700 (98%)EPI509764A/swine/Indiana/A01260416/2013 (A/H3N2) segment 4 (HA)2989.00.000000e+001673/1700 (98%)EPI573566A/swine/Minnesota/A01469329/2014 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI453427A/swine/Korea/D79/2011 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI453426A/swine/Korea/A18/2011 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI351662A/swine/Iowa/A01202659/2011 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI339171A/Maine/06/2011 (A/H3N2) segment 4 (HA)2987.20.000000e+001674/1702 (98%)EPI559527A/swine/North Carolina/A01476560/2014 (A/H3N2) segment 4 (HA)2983.50.000000e+001672/1700 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)2983.50.000000e+001673/1702 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)2983.50.000000e+001673/1702 (98%)EPI653868A/swine/Illinois/A00857134/2011 (A/H0) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI653857A/swine/Illinois/A00857131/2011 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI653774A/swine/Illinois/A00857129/2011 (A/H0) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI443109A/swine/Ohio/A01349495/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI443106A/swine/Ohio/A01349485/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI443099A/swine/Ohio/A01349302/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI443096A/swine/Ohio/A01349305/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI426890A/swine/Indiana/A01432300/2013 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001674/1703 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001674/1703 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)2981.60.000000e+001673/1702 (98%)

LOCUS KU171022 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/Illinois/A02090984/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU171022 VERSION KU171022.1 GI:960313167 KEYWORDS . SOURCE Influenza A virus (A/swine/Illinois/A02090984/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Illinois/A02090984/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) CONSRTM USDA Swine Surveillance TITLE Direct Submission JOURNAL Submitted (19-NOV-2015) National Veterinary Services Laboratories, USDA, 1920 Dayton Ave, Ames, IA 50010, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Illinois/A02090984/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Illinois/A02090984/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1758729" /segment="4" /country="USA" /collection_date="12-Oct-2015" /note="passage details: P1" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83160.1" /db_xref="GI:960313168" /translation="MKTIIAFSCILCLIFAQKLPGSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQSSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKKWDL FVERSTAYSNCYPYYVPDYATLRSLIASSGSMEFTQESFNWTGVAQDGSSYACRRGSV NSFFSRLNWLYNLNYKYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQTNLYVQASGRV IVSTKRSQQTVIPNIGSRPWVRGVSSIISIYWTIVKPGDILLINSTGNLIAPRGYFKI QSGKGSIMRSDAHIDECNSECITPNGSIPNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNSEGTGQAADLKSTQAAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga tttttgctca aaaacttccc 61 ggaagtgaca acagcatggc aacgctgtgc ctaggacatc acgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgaccaaatt gaagtgacta atgctactga gctggtccag 181 agttcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg taaaaattgc 241 acactgatag atgctctatt gggggaccct cactgtgatg acttccaaaa caagaaatgg 301 gacctttttg ttgaacgaag cacagcctac agcaactgtt acccttatta tgtgccagat 361 tatgctaccc ttaggtcact aattgcctca tctggcagca tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctatg cctgcagaag gggttctgtt 481 aacagtttct ttagtagatt gaattggttg tataacttga attacaagta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaagacca aaccaaccta tatgtccaag catcagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtgagg 721 ggtgtctcca gcataataag catctattgg acgatagtaa aaccaggaga catacttttg 781 attaacagca cagggaatct aattgcccct cggggttact tcaaaataca aagtggaaaa 841 ggctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca ttcccaatga caaacctttt caaaatgtga acaagatcac atatggagca 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaagcaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt ctgaaggcac aggacaagca 1141 gcagatctta aaagcactca agcggcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa gtttcatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaac 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgagaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aacgcctgca taggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa agtcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 tttttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcatttg a

AlignSegment-IDNameScoreE-ValueIdentityEPI653109A/swine/Ilinois/A02090306/2015 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI596347A/swine/Illinois/A01840991/2015 (A/H3N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI584819A/swine/Illinois/A02077009/2015 (A/H1N2) segment 7 (MP)1809.00.000000e+00981/982 (99%)EPI672857A/swine/Illinois/A02090639/2015 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI671809A/swine/Iowa/A02025916/2015 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI653106A/swine/Ilinois/A02090378/2015 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI584848A/swine/Illinois/A01489871/2014 (A/H1N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI550289A/swine/Illinois/A01502036/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI539081A/swine/Illinois/A01502079/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI539078A/swine/Illinois/A01502053/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI539075A/swine/Illinois/A01502060/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI539072A/swine/Illinois/A01502049/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI539069A/swine/Illinois/A01501987/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI539066A/swine/Illinois/A01502005/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI532470A/swine/Illinois/A01536186/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI532467A/swine/Illinois/A01536079/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI532464A/swine/Illinois/A01536474/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI531037A/swine/Illinois/A01475279/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI531028A/swine/Illinois/A01475273/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI505032A/swine/Illinois/A01409735/2014 (A/H3N2) segment 7 (MP)1803.50.000000e+00980/982 (99%)EPI584845A/swine/Illinois/A01489882/2015 (A/H3N2) segment 7 (MP)1801.60.000000e+00979/982 (99%)EPI585991A/swine/Illinois/A01462644/2015 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI584842A/swine/Illinois/A01489869/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI584801A/swine/Illinois/A02077016/2015 (A/H1N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI559695A/swine/Illinois/A01520758/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI544813A/swine/Illinois/A01503899/2014 (A/H3N2) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI586156A/swine/Iowa/A01840866/2015 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI586000A/swine/Illinois/A01462663/2015 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI545160A/swine/Illinois/A00843206/2014 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI467962A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI612721A/swine/Illinois/A01820364/2015 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI573031A/swine/Illinois/A01555050/2014 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI487336A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI672864A/swine/Iowa/A01940296/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI653994A/swine/Iowa/A01940123/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI623665A/swine/Illinois/A02024070/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI593952A/swine/Minnesota/A01567878/2015 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI590535A/swine/Illinois/A01820128/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI586046A/swine/Illinois/A01478890/2015 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI568817A/swine/Minnesota/A01567359/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI558117A/Minnesota/33/2014 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI557790A/swine/Indiana/A01476743/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492942A/swine/Iowa/A01365015/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI433280A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1777.60.000000e+00975/982 (99%)EPI673002A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI672998A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI590655A/swine/Illinois/A01841768/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI573352A/swine/Minnesota/A01567013/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI572996A/swine/North Carolina/A01840071/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI568725A/swine/North Carolina/A01840158/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI568695A/swine/North Carolina/A01555273/2015 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI559027A/swine/North Carolina/A01566286/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI550298A/swine/Iowa/A01410995/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI545815A/swine/North Carolina/A01476367/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542565A/swine/North Carolina/A01476078/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542553A/swine/North Carolina/A01476177/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542532A/swine/Minnesota/A01477050/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI542526A/swine/North Carolina/A01477142/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI532378A/swine/North Carolina/A01410687/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI531061A/swine/North Carolina/A01410593/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI531031A/swine/Illinois/A01475266/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI528443A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI526923A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509772A/swine/Indiana/A01260424/2013 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509751A/swine/Iowa/13H068/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509744A/swine/Iowa/13H081/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509737A/swine/Iowa/13H075/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI509723A/swine/Iowa/13H082/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI505077A/swine/Illinois/A01409675/2014 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI501536A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI499940A/swine/Iowa/13H069/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI499924A/swine/Iowa/13H094/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI493014A/swine/Kansas/A01377090/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI485857A/swine/Michigan/A01259075/2013 (A/H1N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI472185A/swine/Iowa/A01432840/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI467959A/swine/Ohio/A01351573/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI466711A/Illinois/03/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI465380A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI464501A/Indiana/04/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI464498A/Indiana/05/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI463731A/swine/Iowa/A01432784/2013 (A/H1N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI446736A/swine/Ohio/A01349615/2013 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1773.90.000000e+00974/981 (99%)EPI573013A/swine/Arkansas/A01555090/2014 (A/H3N2) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI557797A/swine/North Carolina/A01476771/2014 (A/H0) segment 7 (MP)1772.10.000000e+00974/982 (99%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI598966A/swine/North Carolina/A01476757/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573811A/swine/Indiana/A01840344/2014 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI573601A/swine/Indiana/A01840253/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI568686A/swine/Illinois/A01462285/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI560131A/swine/Iowa/A01565921/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI558878A/swine/Nebraska/A01477775/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI550131A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI548261A/swine/Iowa/A01476428/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI545842A/swine/North Carolina/A01476427/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00975/983 (99%)EPI545409A/swine/Iowa/A01476267/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI542449A/swine/North Carolina/A01476196/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI538992A/swine/Michigan/A01410962/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI538957A/swine/South Dakota/A01481811/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI538672A/swine/Oklahoma/A01475757/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI534946A/swine/Iowa/A01501240/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI533784A/swine/North Carolina/A01410800/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI528007A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI528003A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI528000A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI527093A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510216A/swine/Illinois/A01475015/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510213A/swine/Illinois/A01409994/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510201A/swine/Illinois/A01410268/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510192A/swine/Illinois/A01411463/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI510175A/swine/Illinois/A01411461/2014 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI507286A/swine/Illinois/A01411097/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI505104A/swine/Iowa/A01409518/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI505064A/swine/Illinois/A01409657/2014 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI504869A/swine/Illinois/A01411096/2013 (A/H0) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI502745A/swine/Iowa/A01290820/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI493691A/swine/Iowa/13E045/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492999A/swine/Illinois/A01394861/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492969A/swine/Illinois/A01394862/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI487345A/swine/Illinois/A01392224/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI461015A/swine/South Dakota/A01350803/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI460762A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00970/976 (99%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI427192A/swine/Indiana/A01260169/2012 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)

AlignSegment-IDNameScoreE-ValueIdentityEPI596346A/swine/Illinois/A01840991/2015 (A/H3N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI584844A/swine/Illinois/A01489882/2015 (A/H3N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI584818A/swine/Illinois/A02077009/2015 (A/H1N2) segment 6 (NA)2577.20.000000e+001405/1410 (99%)EPI590783A/swine/Missouri/A01554320/2015 (A/H0) segment 6 (NA)2571.70.000000e+001404/1410 (99%)EPI672858A/swine/Illinois/A02090639/2015 (A/H3N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI653110A/swine/Ilinois/A02090306/2015 (A/H3N2) segment 6 (NA)2566.10.000000e+001403/1410 (99%)EPI550288A/swine/Illinois/A01502036/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI539074A/swine/Illinois/A01502060/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI539071A/swine/Illinois/A01502049/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI539068A/swine/Illinois/A01501987/2014 (A/H3N2) segment 6 (NA)2560.60.000000e+001402/1410 (99%)EPI531036A/swine/Illinois/A01475279/2014 (A/H3N2) segment 6 (NA)2556.90.000000e+001401/1410 (99%)EPI531027A/swine/Illinois/A01475273/2014 (A/H3N2) segment 6 (NA)2556.90.000000e+001401/1410 (99%)EPI671808A/swine/Iowa/A02025916/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI653107A/swine/Ilinois/A02090378/2015 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI544812A/swine/Illinois/A01503899/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI539077A/swine/Illinois/A01502053/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI532471A/swine/Illinois/A01536186/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI532468A/swine/Illinois/A01536079/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI532465A/swine/Illinois/A01536474/2014 (A/H3N2) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI508906A/swine/Illinois/A01411343/2014 (A/H0) segment 6 (NA)2555.00.000000e+001401/1410 (99%)EPI623664A/swine/Illinois/A02024070/2015 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI584841A/swine/Illinois/A01489869/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI573030A/swine/Illinois/A01555050/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI539080A/swine/Illinois/A01502079/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI539065A/swine/Illinois/A01502005/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI505031A/swine/Illinois/A01409735/2014 (A/H3N2) segment 6 (NA)2549.50.000000e+001400/1410 (99%)EPI586001A/swine/Illinois/A01462663/2015 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI585992A/swine/Illinois/A01462644/2015 (A/H3N2) segment 6 (NA)2544.00.000000e+001399/1410 (99%)EPI586045A/swine/Illinois/A01478890/2015 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI545159A/swine/Illinois/A00843206/2014 (A/H3N2) segment 6 (NA)2538.40.000000e+001398/1410 (99%)EPI612727A/swine/Illinois/A01847805/2015 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI590654A/swine/Illinois/A01841768/2015 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI586155A/swine/Iowa/A01840866/2015 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI559696A/swine/Illinois/A01520758/2014 (A/H3N2) segment 6 (NA)2532.90.000000e+001397/1410 (99%)EPI590536A/swine/Illinois/A01820128/2015 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI492943A/swine/Iowa/A01365015/2013 (A/H3N2) segment 6 (NA)2527.30.000000e+001396/1410 (99%)EPI487337A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 6 (NA)2521.80.000000e+001395/1410 (98%)EPI612722A/swine/Illinois/A01820364/2015 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI550081A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI546918A/swine/Indiana/13TOSU1054/2013 (A/H0) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI546892A/swine/Indiana/13TOSU1141/2013 (A/H0) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527842A/swine/Indiana/13TOSU1047/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527152A/swine/Indiana/13TOSU1048/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527135A/swine/Indiana/13TOSU1058/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527073A/swine/Indiana/13TOSU1045/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527050A/swine/Indiana/13TOSU1060/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527008A/swine/Indiana/13TOSU1056/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI527002A/swine/Indiana/13TOSU1049/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI526977A/swine/Indiana/13TOSU1052/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI526940A/swine/Indiana/13TOSU1044/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI526912A/swine/Indiana/13TOSU1053/2013 (A/H1N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI468208A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI468200A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI467963A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI465419A/Indiana/17/2013 (A/H3N2) segment 6 (NA)2516.30.000000e+001394/1410 (98%)EPI465390A/Indiana/09/2013 (A/H3N2) segment 6 (NA)2512.60.000000e+001393/1410 (98%)EPI573715A/swine/Kansas/14-032477/2014 (A/H3N2) segment 6 (NA)2510.70.000000e+001395/1412 (98%)EPI550067A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI549962A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528458A/swine/Indiana/13TOSU1143/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528455A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528426A/swine/Indiana/13TOSU1149/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI528423A/swine/Indiana/13TOSU1144/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527994A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527945A/swine/Indiana/13TOSU1151/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527898A/swine/Indiana/13TOSU1145/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527846A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527158A/swine/Indiana/13TOSU1158/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527087A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI527062A/swine/Indiana/13TOSU1160/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI526965A/swine/Indiana/13TOSU1142/2013 (A/H1N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI499655A/swine/North Carolina/A01409048/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI465387A/Indiana/10/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI448835A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446924A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446916A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446860A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI446835A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI401703A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI401688A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI398671A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI398544A/swine/Ohio/A00152576/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI398536A/swine/Ohio/A01208457/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397946A/Ohio/84/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397904A/Hawaii/03/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397626A/Ohio/57/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397554A/Ohio/86/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI397425A/Minnesota/15/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI396191A/Ohio/77/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395876A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI395868A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI394925A/Illinois/11/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI393701A/Ohio/64/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI391438A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI383539A/swine/Indiana/A01203509/2012 (A/H3N2) segment 6 (NA)2510.70.000000e+001393/1410 (98%)EPI550032A/swine/Indiana/13TOSU5248/2013 (A/H1N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI544929A/swine/Iowa/13H098/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI544922A/swine/Iowa/13H090/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI538984A/swine/Iowa/13H092/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI538970A/swine/Iowa/13H076/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI510221A/swine/North Carolina/A01409981/2014 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI509736A/swine/Iowa/13H075/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI501537A/swine/Minnesota/A01366050/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI492350A/swine/Indiana/A00968364/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI472211A/swine/Indiana/A01260313/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI466705A/Indiana/05/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI465384A/Indiana/07/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI465381A/Indiana/05/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI464502A/Indiana/04/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI464499A/Indiana/05/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI463709A/swine/Illinois/A01432795/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI460976A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI446885A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI446876A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI446827A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI446797A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443547A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443539A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443531A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443523A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443515A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI443507A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI433303A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI433295A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI426886A/swine/Iowa/A01432271/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI414172A/swine/Indiana/A00968398/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI404892A/Iowa/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI401685A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI401681A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI400106A/swine/Indiana/A00968308/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI400102A/swine/Indiana/A00968397/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI400096A/swine/Indiana/A00968390/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398520A/swine/Ohio/A01133464/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398502A/swine/Ohio/A01133466/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398494A/swine/Maryland/A01104048/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398486A/swine/Maryland/A01104040/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398123A/swine/North Carolina/A01203801/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI398034A/Maryland/22/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397931A/Ohio/19/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397918A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397750A/Ohio/87/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397661A/Maryland/28/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397627A/Ohio/63/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397625A/Ohio/43/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397624A/Ohio/80/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397621A/Ohio/79/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397620A/Maryland/25/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397547A/Ohio/83/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397539A/Ohio/56/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397531A/Ohio/47/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397523A/Ohio/44/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397515A/Ohio/36/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397431A/Ohio/81/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397395A/Indiana/93/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397377A/Indiana/123/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397363A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397350A/Ohio/37/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397208A/Ohio/78/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397088A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396276A/Indiana/135/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396269A/Indiana/133/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396261A/Indiana/127/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396253A/Indiana/126/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI396234A/Ohio/34/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395958A/swine/Indiana/A00968379/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395950A/swine/Indiana/A00968376/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395934A/swine/Indiana/A00968370/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395921A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395885A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395860A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395852A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395742A/swine/Indiana/A00968386/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395336A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395330A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395327A/West Virginia/06/2011 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395266A/Ohio/65/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI395258A/Ohio/35/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394936A/Ohio/75/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394932A/Wisconsin/23/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394920A/Ohio/69/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394912A/Indiana/132/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394905A/Ohio/62/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI394062A/Indiana/21/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393915A/swine/Indiana/A00968380/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393696A/Indiana/20/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393694A/West Virginia/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393687A/Ohio/23/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393680A/West Virginia/10/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393672A/Ohio/71/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393666A/Ohio/28/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393510A/Ohio/52/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393316A/Ohio/38/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393310A/West Virginia/09/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393305A/Indiana/18/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI393294A/Ohio/24/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI392704A/Indiana/52/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI392683A/Indiana/13/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI392677A/Ohio/13/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388365A/Ohio/17/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388345A/Indiana/15/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388338A/Ohio/16/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388329A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388320A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388318A/Ohio/20/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388311A/Ohio/15/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI388304A/Ohio/14/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI378522A/Indiana/09/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI378514A/Indiana/07/2012 (A/H3N2) segment 6 (NA)2505.20.000000e+001392/1410 (98%)EPI397924A/Ohio/18/2012 (A/H3N2) segment 6 (NA)2501.50.000000e+001391/1410 (98%)EPI597641A/swine/Iowa/A01476877/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI597635A/swine/Iowa/A01476878/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550223A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550172A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550130A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550116A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550102A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI550060A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI547391A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI547380A/swine/Indiana/13TOSU1986/2013 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI547369A/swine/Indiana/13TOSU1983/2013 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI546905A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI546886A/swine/Ohio/13TOSU1560/2013 (A/H0) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI538977A/swine/Iowa/13H073/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI538963A/swine/Iowa/13H065/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI538918A/swine/Iowa/A01501685/2014 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI528415A/swine/Ohio/13TOSU2194/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI527990A/swine/Ohio/13TOSU0888/2013 (A/H1N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI527983A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI527092A/swine/Ohio/13TOSU1541/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI526922A/swine/Indiana/13TOSU1155/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI505060A/swine/Illinois/A01409639/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI502642A/swine/South Dakota/A01366093/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI499948A/swine/Iowa/13H087/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI493013A/swine/Kansas/A01377090/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI492998A/swine/Illinois/A01394861/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI492968A/swine/Illinois/A01394862/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI487344A/swine/Illinois/A01392224/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI485990A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI485982A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI482816A/Indiana/21/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI446868A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433542A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433535A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI433281A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI416856A/swine/Tennessee/A01104055/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI414180A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI414029A/swine/Indiana/A01260135/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI408203A/swine/Indiana/A01260099/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI406575A/swine/Iowa/A01203863/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)EPI397623A/Indiana/150/2012 (A/H3N2) segment 6 (NA)2499.60.000000e+001391/1410 (98%)

AlignSegment-IDNameScoreE-ValueIdentityEPI672856A/swine/Illinois/A02090639/2015 (A/H3N2) segment 4 (HA)3120.10.000000e+001697/1701 (99%)EPI653108A/swine/Ilinois/A02090306/2015 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI653105A/swine/Ilinois/A02090378/2015 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI596345A/swine/Illinois/A01840991/2015 (A/H3N2) segment 4 (HA)3114.60.000000e+001696/1701 (99%)EPI671807A/swine/Iowa/A02025916/2015 (A/H3N2) segment 4 (HA)3103.50.000000e+001694/1701 (99%)EPI584843A/swine/Illinois/A01489882/2015 (A/H3N2) segment 4 (HA)3099.80.000000e+001693/1701 (99%)EPI539073A/swine/Illinois/A01502060/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI539070A/swine/Illinois/A01502049/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI539067A/swine/Illinois/A01501987/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI532466A/swine/Illinois/A01536079/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI505030A/swine/Illinois/A01409735/2014 (A/H3N2) segment 4 (HA)3081.30.000000e+001690/1701 (99%)EPI508905A/swine/Illinois/A01411343/2014 (A/H0) segment 4 (HA)3077.60.000000e+001689/1701 (99%)EPI550287A/swine/Illinois/A01502036/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI539076A/swine/Illinois/A01502053/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI532469A/swine/Illinois/A01536186/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI532463A/swine/Illinois/A01536474/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI531035A/swine/Illinois/A01475279/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI531026A/swine/Illinois/A01475273/2014 (A/H3N2) segment 4 (HA)3075.80.000000e+001689/1701 (99%)EPI539079A/swine/Illinois/A01502079/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI539064A/swine/Illinois/A01502005/2014 (A/H3N2) segment 4 (HA)3070.30.000000e+001688/1701 (99%)EPI585999A/swine/Illinois/A01462663/2015 (A/H3N2) segment 4 (HA)3064.70.000000e+001687/1701 (99%)EPI467961A/swine/Minnesota/A01351603/2013 (A/H3N2) segment 4 (HA)3059.20.000000e+001686/1701 (99%)EPI585990A/swine/Illinois/A01462644/2015 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI584840A/swine/Illinois/A01489869/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI545158A/swine/Illinois/A00843206/2014 (A/H3N2) segment 4 (HA)3053.60.000000e+001685/1701 (99%)EPI573029A/swine/Illinois/A01555050/2014 (A/H3N2) segment 4 (HA)3049.90.000000e+001684/1701 (99%)EPI544811A/swine/Illinois/A01503899/2014 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI492941A/swine/Iowa/A01365015/2013 (A/H3N2) segment 4 (HA)3048.10.000000e+001684/1701 (99%)EPI590653A/swine/Illinois/A01841768/2015 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI586154A/swine/Iowa/A01840866/2015 (A/H3N2) segment 4 (HA)3044.40.000000e+001683/1701 (98%)EPI623663A/swine/Illinois/A02024070/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI612726A/swine/Illinois/A01847805/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI590534A/swine/Illinois/A01820128/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001683/1701 (98%)EPI586044A/swine/Illinois/A01478890/2015 (A/H3N2) segment 4 (HA)3042.60.000000e+001684/1702 (98%)EPI559694A/swine/Illinois/A01520758/2014 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI493012A/swine/Kansas/A01377090/2013 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI396280A/Indiana/144/2012 (A/H3N2) segment 4 (HA)3031.50.000000e+001681/1701 (98%)EPI528431A/swine/Ohio/13TOSU1547/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI527870A/swine/Ohio/13TOSU2043/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI527113A/swine/Ohio/13TOSU2052/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI487335A/swine/Minnesota/A01364816/2013 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI451202A/swine/Alabama/A01104056/2012 (A/H0) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI446888A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI446879A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI446800A/swine/Ohio/12TOSU333/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI443550A/swine/Ohio/12TOSU318/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI426887A/swine/Iowa/A01432271/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI414186A/swine/Indiana/A00968394/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI414170A/swine/Indiana/A00968398/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI408202A/swine/Indiana/A01260099/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI406576A/swine/Iowa/A01203863/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI406504A/swine/Iowa/A01267939/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI404890A/Iowa/16/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI401609A/swine/Ohio/A00138552/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397913A/Indiana/123/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397912A/Indiana/114/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397906A/Illinois/11/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397662A/Maryland/28/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397396A/Indiana/93/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397211A/Indiana/113/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397210A/Maryland/25/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI397006A/Ohio/78/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI396262A/Indiana/127/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI396254A/Indiana/126/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI395883A/swine/Ohio/12TOSU307/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI395259A/Ohio/35/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI394944A/Maryland/22/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI393306A/Indiana/18/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI392926A/Maryland/20/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI388352A/Indiana/20/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI388346A/Indiana/15/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI388298A/Indiana/19/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI388282A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3025.90.000000e+001680/1701 (98%)EPI398492A/swine/Maryland/A01104048/2012 (A/H3N2) segment 4 (HA)3022.20.000000e+001679/1701 (98%)EPI492349A/swine/Indiana/A00968364/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI446927A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI446919A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI446863A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI446830A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI443558A/swine/Ohio/12TOSU325/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI443526A/swine/Ohio/12TOSU308/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI433540A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI433533A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI433306A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI433298A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI424073A/swine/Michigan/A01259003/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI414178A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI406530A/swine/Illinois/A01432127/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI401702A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI401684A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI401680A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI401667A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI400105A/swine/Indiana/A00968308/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI398542A/swine/Ohio/A00152576/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI398534A/swine/Ohio/A01208457/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI398526A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI398518A/swine/Ohio/A01133464/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI398500A/swine/Ohio/A01133466/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI398479A/swine/Maryland/A01104040/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397969A/Wisconsin/34/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397962A/Wisconsin/30/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397954A/Ohio/85/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397939A/Ohio/41/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397548A/Ohio/84/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397540A/Ohio/56/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397532A/Ohio/47/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397524A/Ohio/44/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397516A/Ohio/36/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397503A/Indiana/104/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397446A/Wisconsin/31/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397432A/Ohio/81/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397426A/Minnesota/15/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397385A/Indiana/138/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397351A/Ohio/37/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397340A/Indiana/150/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI397089A/Indiana/52/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI396299A/Maryland/23/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI396208A/Indiana/149/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI396192A/Ohio/77/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI396183A/Indiana/77/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI396175A/Ohio/80/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395874A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395866A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395718A/swine/Indiana/A01104023/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395711A/swine/Indiana/A01104016/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395357A/Pennsylvania/17/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395344A/Wisconsin/28/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395270A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395267A/Ohio/65/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI395251A/Indiana/152/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI394937A/Ohio/75/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI394933A/Wisconsin/23/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI394921A/Ohio/69/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI394077A/Wisconsin/27/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393914A/swine/Indiana/A00968380/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393782A/Ohio/74/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393702A/Ohio/64/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393695A/West Virginia/16/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393681A/West Virginia/10/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393673A/Ohio/71/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393519A/Indiana/65/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393317A/Ohio/38/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393311A/West Virginia/09/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393299A/Indiana/31/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI393298A/Indiana/21/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI392748A/Wisconsin/22/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI392735A/Pennsylvania/13/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI392696A/Indiana/43/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI392693A/Indiana/38/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI388362A/Indiana/16/2012 (A/H3N2) segment 4 (HA)3020.40.000000e+001679/1701 (98%)EPI392684A/Indiana/13/2012 (A/H3N2) segment 4 (HA)3018.50.000000e+001678/1701 (98%)EPI414156A/swine/Iowa/A01244302/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI397562A/Wisconsin/29/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI397206A/Ohio/34/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI396277A/Indiana/135/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI396200A/Ohio/79/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI394060A/Indiana/38/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI392699A/Indiana/46/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI388290A/Indiana/17/2012 (A/H3N2) segment 4 (HA)3016.70.000000e+001678/1701 (98%)EPI493688A/swine/Iowa/13E045/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI446871A/swine/Ohio/12TOSU411/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI446838A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI443542A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI443534A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI443518A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI443510A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI440751A/swine/Indiana/A01432492/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI433279A/swine/Minnesota/A01280462/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001679/1702 (98%)EPI426908A/swine/Iowa/A01432308/2013 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI407279A/Minnesota/18/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI401687A/swine/Ohio/12TOSU522/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI401676A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI400095A/swine/Indiana/A00968390/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI398672A/swine/North Carolina/A01270394/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI398040A/Ohio/57/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI397905A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI397654A/Indiana/90/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI397555A/Ohio/86/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI397404A/Indiana/99/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI396291A/Ohio/63/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI396239A/Indiana/103/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI395956A/swine/Indiana/A00968379/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI395948A/swine/Indiana/A00968376/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI395940A/swine/Indiana/A00968373/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI395932A/swine/Indiana/A00968370/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI395740A/swine/Indiana/A00968386/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI394069A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI394063A/Indiana/21/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI391413A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI383528A/swine/Indiana/A01203509/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI381873A/Hawaii/03/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI378523A/Indiana/09/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI378515A/Indiana/07/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI378502A/Indiana/07/2012 (A/H3N2) segment 4 (HA)3014.90.000000e+001678/1701 (98%)EPI392705A/Indiana/52/2012 (A/H3N2) segment 4 (HA)3013.00.000000e+001677/1701 (98%)EPI397204A/Indiana/21/2012 (A/H3N2) segment 4 (HA)3011.20.000000e+001677/1701 (98%)EPI550135A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI526932A/swine/Ohio/13TOSU1373/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI509734A/swine/Iowa/13H075/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI460974A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI443109A/swine/Ohio/A01349495/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI443106A/swine/Ohio/A01349485/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI443099A/swine/Ohio/A01349302/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI443096A/swine/Ohio/A01349305/2013 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI400101A/swine/Indiana/A00968397/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI397961A/Ohio/88/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI397759A/Wisconsin/35/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI397412A/Michigan/16/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI397106A/Indiana/115/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI397092A/Indiana/57/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI396270A/Indiana/133/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI396246A/Indiana/125/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI396230A/Indiana/147/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI395891A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI395858A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI395850A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI395843A/mink/Wisconsin/31512-7/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI395732A/swine/Indiana/A01104030/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI395725A/swine/Indiana/A01104029/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI395335A/Pennsylvania/11/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001676/1701 (98%)EPI394913A/Indiana/132/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI393661A/Ohio/62/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI392708A/Indiana/59/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001678/1702 (98%)EPI388327A/Indiana/14/2012 (A/H3N2) segment 4 (HA)3009.30.000000e+001677/1701 (98%)EPI392934A/Minnesota/11/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001676/1701 (98%)EPI392711A/Indiana/60/2012 (A/H3N2) segment 4 (HA)3005.60.000000e+001677/1702 (98%)EPI492947A/swine/Iowa/A01365608/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI492437A/swine/Iowa/A01364803/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI487879A/swine/Iowa/A01365406/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI472195A/swine/Iowa/A01432817/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI472183A/swine/Iowa/A01432840/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI460375A/swine/Indiana/A01260280/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI459618A/swine/Michigan/A01432678/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI453566A/swine/Indiana/A01260230/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI446735A/swine/Ohio/A01349615/2013 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI427184A/swine/Indiana/A01260163/2012 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI408199A/swine/Indiana/A01260093/2012 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI406469A/swine/Indiana/A01260041/2012 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI397677A/Ohio/83/2012 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI391404A/swine/Ohio/A01203186/2012 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI366030A/Utah/10/2012 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI346493A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3003.80.000000e+001676/1701 (98%)EPI451222A/swine/Ohio/A01208180/2012 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI395328A/West Virginia/06/2011 (A/H3N2) segment 4 (HA)3000.10.000000e+001675/1701 (98%)EPI612720A/swine/Illinois/A01820364/2015 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI550128A/swine/Indiana/13TOSU5147/2013 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI550079A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI546878A/swine/Ohio/13TOSU1560/2013 (A/H0) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI527985A/swine/Ohio/13TOSU1221/2013 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)EPI527981A/swine/Ohio/13TOSU1238/2013 (A/H3N2) segment 4 (HA)2998.20.000000e+001675/1701 (98%)

LOCUS KU143661 1701 bp cRNA linear VRL 13-DEC-2015 DEFINITION Influenza A virus (A/swine/Illinois/A01945691/2015(H3N2)) segment 4 hemagglutinin (HA) gene, complete cds. ACCESSION KU143661 VERSION KU143661.1 GI:960313745 KEYWORDS . SOURCE Influenza A virus (A/swine/Illinois/A01945691/2015(H3N2)) ORGANISM Influenza A virus (A/swine/Illinois/A01945691/2015(H3N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1701) AUTHORS Lin,K., Huang,H. and Zhang,J. CONSRTM USDA SIV Survelliance TITLE Direct Submission JOURNAL Submitted (12-NOV-2015) National Veterinary Services Laboratory, USDA, 1920 Dayton, Ames, IA 50010, USA FEATURES Location/Qualifiers source 1..1701 /organism="Influenza A virus (A/swine/Illinois/A01945691/2015(H3N2))" /mol_type="viral cRNA" /strain="A/swine/Illinois/A01945691/2015" /serotype="H3N2" /isolation_source="lung" /host="swine" /db_xref="taxon:1755967" /segment="4" /country="USA: Illinois" /collection_date="19-Oct-2015" gene 1..1701 /gene="HA" CDS 1..1701 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ALR83280.1" /db_xref="GI:960313746" /translation="MKTIIAFSCILCLIFAQKLPVSDNSMATLCLGHHAVPNGTLVKT ITDDQIEVTNATELVQNSSTGRICNSPHQILDGKNCTLIDALLGDPHCDDFQNKEWDL FVERSTAYSNCYPYYVPDYATLRSLVASSGNLEFTQESFNWTGVAQDGSSSACRRGSV KSFFSRLNWLYNLNSRYPEQNVTMPNNDKFDKLYIWGVHHPGTDKDQIYLYAQAPGRV IVSTKRSQQTVIPNIGSRPWVRGISSIISIYWTIVKPGDMLLINSTGNLIAPRGYFKI KSGKSSIMRSDAHIDECNSECITPNGSISNDKPFQNVNKITYGACPRYVKQNTLKLAT GMRNVPEKQTRGIFGAIAGFIENGWEGMVDGWYGFRHQNYEGTGQAADLKSTQSAINQ ITGKLNRVIKKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAELLVALENQ HTIDLTDSEMSKLFERTRRQLRENAEDMGNGCFKIYHKCDNACIGSIRNGTYDHDIYR NEALNNRFQIKGVQLKSGYKDWILWISFAISCFLLCVVLLGFIMWACQKGNIRCNICI " sig_peptide 1..48 /gene="HA" mat_peptide 49..1035 /gene="HA" /product="HA1" mat_peptide 1036..1698 /gene="HA" /product="HA2" misc_feature 1..1701 /db_xref="IRD:IRD-A01945691.4" ORIGIN 1 atgaagacta tcattgcttt tagctgcatt ctatgtctga ttttcgctca aaaacttccc 61 gtaagtgaca acagcatggc aacgctgtgc ctgggacacc atgcagtgcc aaacggaaca 121 ttagtgaaaa caatcacgga tgatcaaatt gaagtgacta atgctactga gctggtccag 181 aattcctcaa caggtagaat atgcaacagt cctcaccaaa tccttgatgg gaaaaattgc 241 acactgatag atgctctatt gggggaccct cattgtgatg acttccaaaa caaggaatgg 301 gacctttttg ttgaacgaag cacagcttac agcaactgtt acccttatta tgtgccagat 361 tatgccaccc ttaggtcact agttgcctca tctggcaacc tggaatttac ccaagaaagc 421 ttcaattgga ctggagttgc tcaagacgga tcaagctctg cctgcagaag gggatctgtt 481 aaaagtttct ttagtagatt gaattggttg tacaacttga attccaggta tccagaacag 541 aacgtaacta tgccaaacaa tgacaaattt gacaaattgt acatttgggg ggttcaccac 601 ccgggtacgg acaaggacca aatctaccta tatgcccaag caccagggag agttatagtc 661 tctaccaaaa gaagccaaca aactgtaatc ccgaatatcg ggtctagacc ctgggtaagg 721 ggtatatcca gcataataag catctattgg acgatagtaa aaccgggaga catgcttttg 781 attaacagca cagggaatct aattgccccc cggggttact tcaaaataaa aagtgggaaa 841 agctcaataa tgagatcaga tgcacacatt gatgaatgca attctgaatg cattactcca 901 aatggaagca tttccaatga caaacctttt caaaatgtaa acaagatcac atatggagcc 961 tgtcccagat atgttaagca aaacaccctg aaattggcaa caggaatgcg gaatgtacca 1021 gagaaacaaa ctagaggcat attcggcgca attgcaggtt tcatagaaaa tggttgggag 1081 ggaatggtag acggttggta cggtttcagg catcagaatt atgaaggcac aggacaagca 1141 gcagatctta aaagcactca atcagcaatc aaccaaatca ccgggaaact aaatagagta 1201 atcaagaaaa cgaacgagaa attccatcaa atcgaaaaag aattctcaga agtagaaggg 1261 agaattcagg acctagagaa atacgttgaa gacactaaaa tagatctctg gtcttacaat 1321 gctgagcttc ttgttgccct ggagaaccaa catacaattg atttaaccga ctcagagatg 1381 agcaaactgt tcgaaagaac aagaaggcaa ctgcgggaaa atgctgagga catgggcaat 1441 ggttgcttca aaatatacca caaatgtgac aatgcctgca taggatcaat cagaaatgga 1501 acttatgacc atgatatata cagaaacgag gcattaaaca atcggttcca gatcaaaggt 1561 gttcagctaa aatcaggata caaagattgg atcctatgga tttcctttgc catatcatgc 1621 ttcttgcttt gtgttgttct gctggggttc attatgtggg cctgccaaaa aggcaacatt 1681 aggtgcaaca tttgcatttg a

AlignSegment-IDNameScoreE-ValueIdentityEPI542541A/swine/Iowa/A01476152/2014 (A/H1N2) segment 7 (MP)1792.40.000000e+00978/982 (99%)EPI623674A/swine/Iowa/A02076596/2015 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI573575A/swine/Iowa/A01469372/2014 (A/H1N2) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI600394A/swine/Iowa/A01555010/2014 (A/H1N2) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI492390A/swine/Iowa/A01290438/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI492377A/swine/Iowa/A01399987/2013 (A/H1N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI426905A/swine/Iowa/A01432308/2013 (A/H3N2) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI549991A/swine/Indiana/13TOSU5730/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI546902A/swine/Indiana/13TOSU1982/2013 (A/H0) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545784A/swine/California/A00968949/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI533963A/swine/Iowa/A01481390/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI531628A/swine/Illinois/A01509209/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI531622A/swine/Illinois/A01509203/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI531616A/swine/Illinois/A01509186/2014 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI516839A/Iowa/04/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI504872A/swine/Iowa/A01290867/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI492351A/swine/Indiana/A00968364/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI473816A/swine/Iowa/A01290302/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI468629A/swine/Maryland/A01319694/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI467729A/swine/Ohio/A01351710/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI467726A/swine/Ohio/A01351683/2013 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI451230A/swine/Ohio/A01208181/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446881A/swine/Ohio/12TOSU409/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446873A/swine/Ohio/12TOSU439/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446857A/swine/Ohio/12TOSU421/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446832A/swine/Ohio/12TOSU433/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI446824A/swine/Ohio/12TOSU338/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI414181A/swine/Pennsylvania/A01104050/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI407274A/Minnesota/18/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI401715A/swine/Pennsylvania/A01104049/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI401659A/swine/Ohio/12TOSU527/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI401615A/swine/Minnesota/A01301908/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI398545A/swine/Ohio/A00152576/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI398537A/swine/Ohio/A01208457/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397957A/Ohio/88/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397943A/Ohio/84/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397902A/Hawaii/03/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397551A/Ohio/86/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397535A/Ohio/56/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397435A/Wisconsin/30/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI397421A/Minnesota/15/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI396197A/Ohio/79/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI396187A/Ohio/77/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI396172A/Ohio/80/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395930A/swine/Ohio/12TOSU293/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395877A/swine/Ohio/12TOSU447/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395869A/swine/Ohio/12TOSU450/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395354A/Pennsylvania/17/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395340A/Wisconsin/28/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI395268A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI394928A/Wisconsin/23/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI393916A/swine/Indiana/A00968380/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI393699A/Ohio/64/2012 (A/H3N2) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI394067A/Pennsylvania/11/2012 (A/H3N2) segment 7 (MP)1762.80.000000e+00972/981 (99%)EPI394917A/Ohio/69/2012 (A/H3N2) segment 7 (MP)1761.00.000000e+00972/982 (98%)EPI600424A/swine/North Carolina/A01476920/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI598963A/swine/North Carolina/A01477737/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI568686A/swine/Illinois/A01462285/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI557795A/swine/North Carolina/A01477770/2014 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550295A/swine/Iowa/A01410971/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550280A/swine/Indiana/13TOSU4382/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550224A/swine/Indiana/13TOSU4561/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550215A/swine/Indiana/13TOSU4293/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550173A/swine/Indiana/13TOSU1999/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550138A/swine/Texas/13TOSU0060/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550117A/swine/Indiana/13TOSU4284/2013 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550103A/swine/Indiana/13TOSU4563/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550082A/swine/Ohio/13TOSU0726/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550068A/swine/Indiana/13TOSU5669/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI550061A/swine/Indiana/13TOSU5238/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI549963A/swine/Indiana/13TOSU5869/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI547388A/swine/Indiana/13TOSU1991/2013 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI542550A/swine/North Carolina/A01476072/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI542544A/swine/North Carolina/A01476099/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI538919A/swine/Iowa/A01501685/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI538666A/swine/Iowa/A01410752/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI534949A/swine/Iowa/A01501048/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI532375A/swine/North Carolina/A01410688/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI530998A/swine/Iowa/A01410600/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI528475A/swine/Ohio/13TOSU0410/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI528427A/swine/Indiana/13TOSU1042/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI527868A/swine/Indiana/13TOSU1050/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI527099A/swine/Indiana/13TOSU1319/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI527088A/swine/Ohio/13TOSU0411/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI526885A/swine/Indiana/13TOSU1043/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI509787A/swine/Indiana/A01260445/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI509784A/swine/Indiana/A01260443/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI509775A/swine/Indiana/A01260426/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI507295A/swine/Illinois/A00843193/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI505083A/swine/Illinois/A01409611/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI505070A/swine/Illinois/A01411232/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI505038A/swine/Illinois/A01409717/2014 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI502385A/swine/Illinois/A01427136/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI499890A/swine/Indiana/A01260398/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492963A/swine/Minnesota/A01394248/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492406A/swine/Iowa/A01290468/2013 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI492380A/swine/Minnesota/A01392079/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI489727A/swine/Minnesota/A01394021/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI485991A/swine/Indiana/13TOSU1128/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI485983A/swine/Indiana/13TOSU1122/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI484455A/swine/North Carolina/A01291329/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI482815A/Indiana/21/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI482812A/Indiana/11/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI476669A/swine/Michigan/A01259074/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI472212A/swine/Indiana/A01260313/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI472197A/swine/Iowa/A01432817/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI468209A/swine/Indiana/13TOSU490/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI468201A/swine/Indiana/13TOSU482/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI465418A/Indiana/17/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI465389A/Indiana/09/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI465386A/Indiana/10/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI465383A/Indiana/07/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI463710A/swine/Illinois/A01432795/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI460975A/swine/Minnesota/A01350866/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI453568A/swine/Indiana/A01260230/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451224A/swine/Ohio/A01208180/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI451205A/swine/Alabama/A01104056/2012 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI448836A/swine/Kansas/13-105721a/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI447028A/swine/Iowa/A01432604/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446921A/swine/Ohio/12TOSU50/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI446913A/swine/Ohio/12TOSU52/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443536A/swine/Ohio/12TOSU176/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443528A/swine/Ohio/12TOSU129/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443512A/swine/Ohio/12TOSU138/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443504A/swine/Ohio/12TOSU175/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443110A/swine/Ohio/A01349495/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443107A/swine/Ohio/A01349485/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443100A/swine/Ohio/A01349302/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI443097A/swine/Ohio/A01349305/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI441501A/swine/Minnesota/A01349160/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI441498A/swine/Ohio/A01349140/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI440749A/swine/Indiana/A01432492/2013 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI433543A/swine/Ohio/12TOSU374/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI433536A/swine/Ohio/12TOSU371/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI433300A/swine/Ohio/12TOSU363/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI433292A/swine/Ohio/12TOSU370/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI433271A/swine/Ohio/A01280357/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI427186A/swine/Indiana/A01260163/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI426885A/swine/Iowa/A01432271/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI426874A/swine/Ohio/A01280112/2013 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI424076A/swine/Michigan/A01259003/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414189A/swine/Indiana/A00968394/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414173A/swine/Indiana/A00968398/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414154A/swine/Iowa/A01244302/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414110A/swine/Ohio/A01279763/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414104A/swine/Ohio/A01279737/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414053A/swine/Ohio/A01279640/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414050A/swine/Ohio/A01279687/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI414038A/swine/Ohio/A01279522/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI408339A/swine/Indiana/A01432186/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI408210A/swine/Indiana/A01260110/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI408204A/swine/Indiana/A01260099/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI408198A/swine/Indiana/A01260048/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI407026A/swine/Ohio/A01279011/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406574A/swine/Iowa/A01203863/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406535A/swine/Ohio/A01267959/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406528A/swine/Illinois/A01432127/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406505A/swine/Iowa/A01267939/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406471A/swine/Indiana/A01260041/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI406468A/swine/Indiana/A01260029/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI404893A/Iowa/16/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401623A/swine/Ohio/12TOSU484/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI401619A/swine/Ohio/12TOSU483/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI400107A/swine/Indiana/A00968308/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI400104A/swine/Indiana/A00968397/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398690A/swine/North Carolina/A01270266/2012 (A/H1N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398529A/swine/Wisconsin/A00677500/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00973/983 (98%)EPI398503A/swine/Ohio/A01133466/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398150A/swine/Ohio/25/2012 (A/H1N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398039A/West Virginia/09/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI398038A/Ohio/38/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397940A/Ohio/81/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397921A/Ohio/18/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397754A/Wisconsin/35/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397746A/Ohio/87/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397558A/Wisconsin/29/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00973/983 (98%)EPI397543A/Ohio/83/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397527A/Ohio/47/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397519A/Ohio/44/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397499A/Indiana/104/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397407A/Michigan/16/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397399A/Indiana/99/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397391A/Indiana/93/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397380A/Indiana/138/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397373A/Indiana/123/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397218A/Indiana/144/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI397087A/Indiana/52/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396287A/Ohio/57/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396282A/Ohio/43/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396273A/Indiana/135/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396257A/Indiana/127/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396249A/Indiana/126/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396236A/Indiana/103/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396216A/Indiana/150/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI396178A/Indiana/77/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395966A/swine/Indiana/A00968379/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395951A/swine/Indiana/A00968376/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395943A/swine/Indiana/A00968373/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395935A/swine/Indiana/A00968370/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395922A/swine/Ohio/12TOSU268/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395894A/swine/Ohio/12TOSU420/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395861A/swine/Ohio/12TOSU464/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395853A/swine/Ohio/12TOSU467/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395743A/swine/Indiana/A00968386/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395720A/swine/Indiana/A01104023/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395713A/swine/Indiana/A01104016/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395329A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395324A/West Virginia/06/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395262A/Ohio/65/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI395246A/Indiana/152/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394935A/Ohio/75/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394072A/Wisconsin/27/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394064A/Indiana/60/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394061A/Indiana/21/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI394058A/Indiana/38/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393691A/West Virginia/16/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393677A/West Virginia/10/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393658A/Ohio/62/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393514A/Indiana/65/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI393506A/Ohio/52/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00973/983 (98%)EPI393302A/Indiana/18/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI392697A/Indiana/46/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI392694A/Indiana/43/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI392692A/Indiana/38/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI392680A/Ohio/18/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI392679A/Ohio/17/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI392676A/Ohio/13/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI391475A/swine/Ohio/A01203186/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI391470A/swine/North Carolina/A01203272/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388364A/Ohio/17/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388359A/Indiana/16/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388355A/Indiana/21/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388349A/Indiana/20/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388342A/Indiana/15/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388335A/Ohio/16/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388328A/Ohio/20/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI388315A/Ohio/20/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI383550A/swine/Indiana/A01203509/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI378518A/Indiana/09/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI378510A/Indiana/07/2012 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI347605A/Iowa/08/2011 (A/H3N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI499949A/swine/Iowa/13H087/2013 (A/H3N2) segment 7 (MP)1755.40.000000e+00971/982 (98%)EPI392703A/Indiana/52/2012 (A/H3N2) segment 7 (MP)1755.40.000000e+00970/980 (98%)EPI388308A/Ohio/15/2012 (A/H3N2) segment 7 (MP)1755.40.000000e+00970/980 (98%)EPI673002A/swine/Minnesota/A01940148/2015 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI672998A/swine/Minnesota/A01940427/2015 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600433A/swine/North Carolina/A01476974/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI600384A/swine/Illinois/A01476977/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI597657A/swine/North Carolina/A01476848/2014 (A/H3N2) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI593912A/swine/Illinois/A01840376/2015 (A/H1N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)