Sequences (COVID)

COG-UK has released (at GISAID) two UK Variant B.1.1.7 SARS CoV2 sequences, England/ALDP-CEFD6E/2020 & England/ALDP-CB4500/2020) from Alderley Park which had acquired Spike E484K.

COG-UK has released (at GISAID) a 501.v2 SARS-CoV2 COVID sequence, England/OXON-F440A7/2020, collected Dec 18.

Charité Universitätsmedizin Berlin has released (at GISAID) a 501.v2 SARS-CoV2 COVID sequence, Germany/BW-ChVir21958/2020, from Baden-Wuerttemberg collected Dec 30.

COG-UK has released (at GISAID) a 501.v2 SARS-CoV2 COVID sequence, Wales/PHWC-4A8A17/2020, from Wales collected Dec 26.

Norwegian Institute of Public Health has released (at GISAID) a 501.v2 SARS-CoV2 COVID sequence, Norway/7234/2020, from Viken Norway collected Dec 27.

The sequence of B.1.1.7 in New Mexico has not been released and will be assigned a UNK number, which will be updated when released USA/NM-DOH-UNK74/2021 USA/NM-DOH-2021001734/2021 The New Mexico Department of Health on Wednesday announced the state’s first case of the B117 coronavirus variant. A male in his 60’s has the variant; he is associated with travel to the UK in December. https://cv.nmhealth.org/2021/01/13/new-mexico-identifies-first-case-of-b117-coronavirus-variantmale-60s-associated-with-uk-travel-in-december/

Oklahoma Animal Disease Diagnostic Laboratory has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/OK-ADDL-6/2021, collected Jan 9.

The sequence of the Bolder Co case has not been released, so it will be assigned an UNK number USA/CO-CDC-STM-UNK73/2021 Boulder

2 UK Variant B.1.1.7 SARS CoV2 COVID Sequences From Colorado have not been made public and will be assigned UNK numbers below, which will be updated when available. These cases are included the CDC US map of B.1.1.7 cases, which currently includes 3 in Florida. USA/CO-CDPHE-UNK46/2020, USA/CO-CDPHE-UNK47/2020 USA/CO-CDPHE-2100183341/2021 1/4 Colorado USA/CO-CDPHE-VA20210105/2021 1/5 Colorado https://www.cdc.gov/coronavirus/2019-ncov/transmission/variant-cases.html

The sequence for the confirmed UK Variant B.1.1.7 cited below has not been released and will be assigned a UNK number which will be upgraded when released USA/WI-WSLH-UNK72/2021 USA/WI-WSLH-210931/2021 1/29 Eau Claire County Wisconsin The particular variant, referred to as B.1.1.7, In Wisconsin, the strain was identified through ongoing surveillance and whole genome sequencing, https://www.dhs.wisconsin.gov/news/releases/011321a.htm

Wadsworth Center has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/NY-Wadsworth-21001916-01/2020, collected Dec 24 from 30F.

Wadsworth Center has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/NY-Wadsworth-21002420-01/2020, collected Dec 31 from 68F.

INSPI has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence (Ecuador/INSPI-179112/2021) collected between Jan 5.

Ministry of Health Turkey has released (at GISAID) five UK Variant B.1.1.7 SARS CoV2 sequences, (Turkey/HSGM-1169/2020, Turkey/HSGM-1170/2020, Turkey/HSGM-1219/2021, Turkey/HSGM-1221/2021, Turkey/HSGM-1222/2021), collected Dec 29 - Jan 4 in Aksaray.

Ministry of Health Turkey has released (at GISAID) two UK Variant B.1.1.7 SARS CoV2 sequences, (Turkey/HSGM-1143/2020 & Turkey/HSGM-1202/2020), collected Dec 24-31).

COG-UK has released (at GISAID) a 501.v2 (B.1.351) SARS-CoV2 COVID Sequence (England/MILK-E0B887/2020) collected Dec 29.

COG-UK has released (at GISAID) two 501.v2 (B.1.351) SARS-CoV2 COVID Sequence (England/210121130/2021, England/210190688/2021 ) collected Jan 5-8.

Robert Koch Institute has released (at GISAID) a 501.v2 (B.1.351) SARS-CoV2 COVID Sequence (Germany/NW-RKI-I-0027/2020) from North Rhine-Westphalia Germany collected Dec 28.

Two of the twelve B.1.1.7 SARS CoV2 sequences from New York have not been released and will be given UNK numbers, which will be updated when released. USA/NY-Wadsworth-21UNK70-01/2021 USA/NY-Wadsworth-21004124-01/2021 1/4 76F Nassau County USA/NY-Wadsworth-21UNK71-01/2021 USA/NY-Wadsworth-21002979-01/2020 12/20 60M Warren County We found eight more cases, so we have 12 in New York https://www.governor.ny.gov/news/audio-rush-transcript-governor-cuomo-updates-new-yorkers-states-covid-19-response-makes-0

Wadsworth Center has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/NY-Wadsworth-21002419-01/2020, collected Dec 21 from 63F.

Wadsworth Center has released (at GISAID) two UK Variant B.1.1.7 SARS CoV2 sequences, (USA/NY-Wadsworth-21002416/2020, USA/NY-Wadsworth-21002412-01/2021) collected Dec 21 from 37F and Jan 2 from 12M.

Sequences from the two UK Variant (B.1.1.7) have not been released. They will be assigned UNK numbers and updated when sequences released. USA/MD-CDC-STM-UNK61/2021 Anne Arundel USA/MD-HP01101/2021 USA/MD-CDC-STM-UNK62/2021 Anne Arundel USA/MD-HP01278/2021 1/4 37F Maryland Two Anne Arundel County, Maryland, residents are the first to be confirmed with having the U.K. variant of COVID-19, Gov. Larry Hogan said Tuesday. https://wtop.com/coronavirus/2021/01/hogan-uk-variant-of-covid-19-found-in-2-maryland-residents/ The two cases announced today involved Maryland residents in the Baltimore region who are both younger than 65 years old and l…

Universidade de São Paulo has released six P.1 SARS CoV2 COVID variant sequences, (Brazil/AM-L70-CD1718/2020 , Brazil/AM-L70-CD1721/2020 , Brazil/AM-L70-CD1722/2020 , Brazil/AM-L70-CD1733/2020 , Brazil/AM-L70-CD1737/2020 , Brazil/AM-L70-CD1739/2020) from Manaus collected Dec 16-21.

National Institute of Infectious Diseases has released (at GISAID) four 501.v3 (B.1.1.28) SARS-CoV2 COVID Sequences Sans Spike Dels (Japan/IC-0561/2021, Japan/IC-0562/2021, Japan/IC-0563/2021, Japan/IC-0564/2021) collected in Jan.

Robert Koch Institute has released (at GISAID) two 501.v2 (B.1.351) SARS-CoV2 COVID Sequences (Germany/NW-RKI-I-0028/2020 12/28, Germany/NW-RKI-I-0029/2020 12/28) from North Rhine-Westphalia Germany collected Dec 28.