Sequences (COVID)

TXDSHS has released a B.1.1.7 SARS CoV2 Sequences (USA/TX-DSHS-2135/2021) collected in Denton County Jan 7.

The two B.1.1.7 sequences described below have not been released. the will be assigned UNK numbers, which will be updated upon release. USA/MI-MDHHS-UNK131/2021 Washtenaw Co USA/MI-MDHHS-UNK132/2021 Washtenaw Co USA/MI-UM-10037887503/2021 1/18 Ann Arbor Michigan USA/MI-UM-10037887541/2021 1/18 Ann Arbor Michigan Additional cases of B.1.1.7. have been identified in two adult females living in Washtenaw County who were in close contact with the first person in Michigan to be diagnosed with the COVID-19 variant. All three individuals are associated with the University of Michigan. The Michigan Department of Health and Human Services (MDHHS) and Washt…

NYCPHL has released a B.1.1.7 SARS CoV2 Sequence (USA/NY-NYCPHL-002241/2021) collected in Morrisania Jan 6.

NYCPHL has released two B.1.1.7 SARS CoV2 Sequences (USA/NY-NYCPHL-002130/2021, USA/NY-NYCPHL-002297/2021) collected in Central Harlem Jan 4-6.

COG-UK, has released four B.1.1.7 SARS CoV2 Sequences (England/ALDP-F82131/2021, England/ALDP-EE4936/2021, England/ALDP-EE1F73/2021. England/ALDP-EE4A24/2021) collected in Alderley Park Jan 3-8.

MDU-PHL has released (at GISAID) a 501.v2 SARS-CoV2 Variant sequence (Australia/VIC18096/2021) collected in Victoria Jan 8.

Complexo Hospitalario Universitario de Vigo has released (at GISAID) a 501.v2 SARS-CoV2 Variant sequence (Spain/GA-CHUVI-19118872/2020) collected in Galicia Dec 24.

NSW Health Pathology has released (at GISAID) a 501.v2 SARS-CoV2 Variant sequence (Australia/NSW1469/2021) collected in Sydney Jan 15.

Wadsworth Center, has released a B.1.1.7 SARS CoV2 Sequence (USA/NY-Wadsworth-21000993-01/2021) collected Jan 4.

Wadsworth Center, has released a B.1.1.7 SARS CoV2 Sequences (USA/NY-Wadsworth-21001480-01/2021) collected Jan 5.

Wadsworth Center, has released two B.1.1.7 SARS CoV2 Sequences (USA/NY-Wadsworth-21006029-01/2021, USA/NY-Wadsworth-21006030-01/2021) collected Jan 6-7.

Bergthaler laboratory has released (at GISAID) a 501.v2 SARS-CoV2 Variant sequence (Austria/CeMM1952/2020) collected in 2020.

Institut Pasteur, Paris has released (at GISAID) a 501.v2 SARS-CoV2 Variant sequence (France/Mayotte-IPP00176/2021) from Mamoudzou Mayotte collected Jan 7.

CHU Purpan has released (at GISAID) two 501.v2 SARS-CoV2 Variant sequences (France/OCC-157/2020, France/OCC-218/2020) from Toulouse collected Dec 27.

KEMRI-Wellcome Trust Research Programme/KEMRI-CGMR-C Kilifi has released (at GISAID) two 501.v2 SARS-CoV2 Variant sequences (Kenya/C77305/2020, Kenya/C77417/2020) from Kilifi collected Dec 15-17.

Quest Diagnostics, has released a B.1.1.7 SARS CoV2 Sequence (USA/CT-QDX-3230/2021) collected Jan 6.

Faroese National Reference Laboratory for Fish and Animal Diseases has released (at GISAID) a P.1 Variant SARS CoV2 sequence (Faroe Islands/HFS-193/2021) collected Dec 12.

The sequence for the third B.1.1.7 case in Maryland, as cited in the CDC variant map, has not been released. it will be assigned a UNK number which will be updated upon release. USA/MD-CDC-STM-UNK130/2021 Maryland USA/MD-HP01542/2021 Maryland B.1.1.7 Lineage Cases in the United States*† Total Cases: 144 https://www.cdc.gov/coronavirus/2019-ncov/transmission/variant-cases.html

CDC has released 45 California UK Variant B.1.1.7 SARS CoV2 Sequences to bring the CA total to 77 USA/CA-CDC-STM-166/2020 12/31 17M California USA/CA-CDC-STM-289/2021 1/3 35M California USA/CA-CDC-STM-296/2021 1/3 5M California USA/CA-CDC-STM-303/2021 1/3 5M California USA/CA-CDC-STM-310/2021 1/3 29M California USA/CA-CDC-STM-342/2021 1/3 27F California USA/CA-CDC-STM-208/2021 1/2 15M California USA/CA-CDC-STM-222/2021 1/2 29M California USA/CA-CDC-STM-232/2021 1/2 27M California USA/CA-CDC-STM-244/2021 1/2 56M California USA/CA-CDC-STM-A100051/2021 1/4 20M California USA/CA-CDC-STM-A100116/2021 1/5 39M California USA/CA-CDC-STM-A100119/…

Florida Bureau of Public Health Laboratories has released (at GISAID) four Variant B.1.1.7 SARS CoV2 Sequences (USA/FL-CDC-STM-211/2021, USA/FL-CDC-STM-A100002/2021, USA/FL-CDC-STM-211/2021) From Florida collected Jan 4-6.

CDC has released (at GISAID) three Variant B.1.1.7 SARS CoV2 Sequences (USA/FL-CDC-STM-211/2021, USA/FL-CDC-STM-A100002/2021, USA/FL-CDC-STM-211/2021) From Florida collected Jan 2-4.

COG-UK has released (at GISAID) two variant B.1.1.7 sequences (England/QEUH-F89914/2021, England/QEUH-F8999C/2021 ) with E484K from Glasgow collected Jan 8.

The B.1.17 sequence described below ha not been released. It will be assigned a UNK number, which will be updated upon release. USA/MA-CDC-STM-UNK129/2021 Massachusetts A second person tested positive Tuesday in Massachusetts with the more contagious variant of COVID-19 first detected in the United Kingdom, Public Health Commissioner Monica Bharel said. Bharel said the case of the B.1.1.7 variant was discovered by the Massachusetts Public Health Laboratory, but she did not offer further details. The first case of the new strain of the coronavirus was detected over the weekend in a female resident of Boston in her 20s who had visited the United Kingdom…

CDC has released (at GISAID) a B.1.1.7 Variant SARS CoV2 sequence (USA/PA-CDC-STM-A100226/2021) collected Jan 5

Michigan Department of Health and Human Services, Bureau of Laboratories has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/MI-MDHHS-SC23042/2021, collected Jan 8. B.1.1.7. was identified in Michigan in an adult female living in Washtenaw County by the Michigan Department of Health and Human Services (MDHHS) Bureau of Laboratories on Jan. 16. https://www.wnem.com/news/first-case-of-new-covid-19-variant-identified-in-michigan/article_da6f19d2-5839-11eb-9693-1b17e12f133a.html