Sequences (COVID)

COG-UK has released (at GISAID) a UK variant B.1.1.7 sequence collected on Jan 10 in Alderley Park. England/ALDP-FAF66C/2021 1/10 Alderley Park England

COG-UK has released (at GISAID) a B.1.1.7 UK variant sequence collected on Jan 15 in Alderley Park. England/ALDP-1090178/2021 1/15 Alderley Park England

Wadsworth has released (at GISAID) a UK variant B.1.1.7 sequence collected on Jan 7 in Nassau County USA/NY-Wadsworth-21009955-01/2021 1/7 49F Nassau County New York

KRISP has released (at GISAID) seventeen 501.v2 (B.1.351) variant sequences collected on Dec 14-Jan 7 in Maputo. Mozambique/INS-K007999/2021 1/7 28M Maputo Mozambique Mozambique/INS-K007988/2021 1/7 1 F Maputo Mozambique Mozambique/INS-K007985/2021 1/7 20M Maputo Mozambique Mozambique/INS-K007984/2021 1/7 27F Maputo Mozambique Mozambique/INS-K007981/2021 1/6 44F Maputo Mozambique Mozambique/INS-K007976/2021 1/7 49F Maputo Mozambique Mozambique/INS-K007939/2020 12/26 32M Maputo Mozambique Mozambique/INS-K007936/2020 12/23 19F Maputo Mozambique Mozambique/INS-K007930/2020 12/14 36F Maputo Mozambique Mozambique/INS-K007928/2020 12/16 39M Maputo Mozamb…

KRISP has released (at GISAID) a 501.v2 (B.1.351) variant sequence collected on Jan 6 in Maputo. Mozambique/INS-K007980/2021 1/6 54F Maputo Mozambique

KRISP has released (at GISAID) a 501.v2 (B.1.351) variant sequence collected on Jan 7 in Inhambane. Mozambique/INS-K007977/2021 1/7 29F Inhambane Mozambique

The Jackson Laboratory has released (at GISAID) two B.1.1.7 sequences collected on Jan 6 USA/CT-JAX-J000016/2021 1/6 25M Connecticut USA/CT-JAX-J000015/2021 1/6 21M Connecticut

Seattle Flu Study has released (at GISAID) a B.1.1.7 sequences collected on Jan 9 in Pierce County USA/WA-SFS-S3633/2021 1/9 Pierce County Washington

Carpi Laboratory has released (at GISAID) a B.1.1.7 sequence collected on Jan 12 USA/IN-PU-100821/2021 1/12 Indiana

National Virus Reference Laboratory has released a 510.v2 variant sequence from Gatway collected Jan 14

National Virus Reference Laboratory has released four 510.v2 variant sequences from Dublin collected Dec 26-Jan 13 Ireland/D-NVRL-21IRL00178/2020 12/29 20sF Dublin Ireland/D-NVRL-21IRL00177/2020 12/26 20sM Dublin Ireland/D-NVRL-21IRL00174/2020 12/29 20sM Dublin Ireland/D-NVRL-21IRL12824/2021 1/13 20sF Dublin

Wyoming Public Health Laboratory has released (at GISAID) two B.1.1.7 sequences collected on Jan 24 USA/WY-WPHL-21008925/2021 1/24 20 Wyoming USA/WY-WPHL-21008909/2021 1/24 42 Wyoming

The sequences for the 97 cases linked to Roberta Place have not been released. The UNK numbers will be updated upon release. Canada/ON-PHL-21-UNK239/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK240/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK241/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK242/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK243/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK244/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK245/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK246/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK247/2021 Barrie Ontario Canada Canada/ON-PHL-21-UNK248/2021 Barrie Ontario Canada Canada/ON-PHL-21-UN…

CDC has released (at GISAID) seven B.1.1.7 SARS CoV2 sequences collected in California Jan 11. USA/CA-CDC-STM-0000025-H05/2021 1/11 California USA/CA-CDC-STM-0000025-G04/2021 1/11 California USA/CA-CDC-STM-0000025-F02/2021 1/11 California USA/CA-CDC-STM-0000025-E04/2021 1/11 California USA/CA-CDC-STM-0000025-C04/2021 1/11 California USA/CA-CDC-STM-0000025-C02/2021 1/11 California USA/CA-CDC-STM-0000025-C01/2021 1/11 California

One of the 6 B.1.1.7 sequences in Wayne County has not been released. It will be assigned a UNK number which will be updated when released. USA/MI-MDHHS-UNK338/2021 Wayne County Michigan Another six B.1.1.7. cases have been identified in Wayne County, Lynn Sutfin, spokesperson of the Michigan Department of Health and Human Services, told Bridge Michigan Wednesday. The earlier four people in Wayne County were described by local health officials as two men and two women in their 30s and 40. The Wayne and Washtenaw cases are not all linked, but appear to be from “multiple introductions,” Sutfin told Bridge . https://www.bridgemi.com/talent-e…

Sequences of the Wayne Co cases have not been released. They will be assigned UNK numbers which will be updated upon release. USA/MI-UM-UNK180/2021 Wayne County Michigan USA/MI-UM-UNK181/2021 Wayne County Michigan USA/MI-UM-UNK182/2021 Wayne County Michigan USA/MI-UM-UNK183/2021 Wayne County Michigan The sequences below are being assigned to the above four. These sequences are lacking deletions in the S and NSP6 genes and represent an introduction that is not linked to the outbreak at University of Michigan. USA/MI-MDHHS-SC23132/2021 1/11 Wayne County Michigan USA/MI-MDHHS-SC23131/2021 1/11 Wayne County Michigan USA/MI-MDHHS-SC23130/2021 1/11 Wa…

One of the Washtenaw County sequences cited below has not been released. It will be assigned a UNK number which will be updated upon release. USA/MI-UM-UNK339/2021 Washtenaw County Michigan Since the beginning of the winter term, increased testing of U-M students has identified 175 COVID-19 cases among students in the U-M community, 14 of which have been determined to be the B.1.1.7 variant. https://www.bridgemi.com/talent-education/facing-new-covid-variant-university-michigan-students-asked-stay-home

Michigan DHHS has released (at GISAID) a B.1.1.7 SARS CoV2 sequence collected in Wayne County Jan 15. USA/MI-MDHHS-SC23078/2021 1/15 Wayne County Michigan

CDC has released (at GISAID) two B.1.1.7 SARS CoV2 sequences collected in North Carolina Jan 14. USA/NC-CDC-STM-0000013-A07/2021 1/14 North Carolina USA/NC-CDC-STM-0000013-B02/2021 1/14 North Carolina

Sequences for the two 501.v2 variant cases have not been released. They will be assigned UNK numbers, which will be updated upon release. USA/SC-CDC-LC0000UNK336/2021 Lowcountry South Carolina USA/SC-CDC-LC0003421/2021 1/10 Lowcounty South Carolina USA/SC-DHEC-UNK337/2021 Pee Dee South Carolina a South Carolina sample that was tested at LabCorp and determined to be the B.1.351 variant originally identified in South Africa. Also, DHEC's Public Health Laboratory tested samples on Jan. 25 and yesterday identified a separate case of the same variant. https://scdhec.gov/index.php/news-releases/south-carolina-public-health-officials-detect-natio…

COG-UK has released (at GISAID) a B.1.1.7 SARS CoV2 sequence with E484Q collected in Portsmouth in Jan. England/PORT-2E19CC/2021 Portsmouth England E484Q

COG-UK has released (at GISAID) a B.1.1.7 SARS CoV2 sequence with E484K collected in Cambridge Jan 15. England/CAMC-105EE42/2021 1/15 Cambridge England

COG-UK has released (at GISAID) a B.1.1.7 SARS CoV2 sequence with E484K collected in Alderley Park Jan 13. Wales/ALDP-101BF7B/2021 1/13 Wales

COG-UK has released (at GISAID) five B.1.1.7 SARS CoV2 sequences with E484K collected in Alderley Park Jan 10-13. England/ALDP-FAF66C/2021 1/10 Alderley Park England England/ALDP-1014A08/2021 1/13 Alderley Park England England/ALDP-10149DE/2021 1/13 Alderley Park England England/ALDP-1016C3D/2021 1/13 Alderley Park England England/ALDP-1016BE5/2021 1/13 Alderley Park England

NYCPHL has released (at GISAID) seven B.1.1.7 SARS CoV2 sequences collected in New York Jan 14-16. USA/NY-NYCPHL-002517/2021 1/16 87M New York New York USA/NY-NYCPHL-002458/2021 1/14 15F New York New York USA/NY-NYCPHL-002449/2021 1/14 71F New York New York USA/NY-NYCPHL-002448/2021 1/14 12M New York New York USA/NY-NYCPHL-002452/2021 1/14 47M New York New York USA/NY-NYCPHL-002451/2021 1/14 6M New York New York USA/NY-NYCPHL-002450/2021 1/14 11M New York New York