Sequences (COVID)

MSHS has released (at GISAID) a B.1.1.7 SARS CoV2 Sequence (USA/NJ-MSHSPSP-PV25263/2021) collected in Essex County Jan 7.

Wadsworth Center has released (at GISAID) a B.1.1.7 SARS CoV2 Sequence (USA/NY-Wadsworth-21009921-01/2021) collected in Suffolk County Jan 12.

Wadsworth Center has released (at GISAID) a B.1.1.7 SARS CoV2 Sequence (USA/NY-Wadsworth-21009428-01/2021) collected in Onondaga County Jan 11.

Wadsworth Center has released (at GISAID) a B.1.1.7 SARS CoV2 Sequence (USA/NY-Wadsworth-21009429-01/2021) collected in Niagara County Jan 15.

Wadsworth Center has released (at GISAID) a B.1.1.7 SARS CoV2 Sequence (USA/NY-Wadsworth-21008815-01/2021) collected in Nassau Co Jan 9.

Sequences for the cases below have not been released. UNK numbers will be updated upon release. Canada/ON-PHL-20-UNK236/2020 70sF Markham Ontario Canada Canada/ON-PHL-20-UNK237/2020 50sF Markham Ontario Canada Canada/ON-PHL-20-UNK238/2020 60sF Markham Ontario Canada Markham has three confirmed cases of the variant. A female in her 70s and a female in her 50s from the same family both tested positive Jan. 3, and a male in his 60s tested positive Jan. 4. All cases were household and close contacts. https://www.yorkregion.com/news-story/10316829-york-region-very-concerned-more-virulent-u-k-variant-of-covid-19-spreading-locally/

Sequences for the cases below have not been released. They will be assigned UNK numbers, which will be updated upon release Canada/ON-PHL-20-UNK234/2020 50sF Vaughan Ontario Canada Canada/ON-PHL-20-UNK235/2020 20sF Vaughan Ontario Canada Two females in Vaughan were found positive for the variant, one in her 50s with a travel-related case and one in her 20s, who contracted the virus via community transmission. https://www.yorkregion.com/news-story/10316829-york-region-very-concerned-more-virulent-u-k-variant-of-covid-19-spreading-locally/

The sequences described below have not been released. UNK numbers are being assigned to the three most recent cases, which will be updated when released. Canada/ON-PHL-20-UNK231/2020 50sF Georgina Ontario Canada Canada/ON-PHL-20-UNK232/2020 30sM Georgina Ontario Canada Canada/ON-PHL-20-UNK233/2020 30sM Georgina Ontario Canada Another three cases appeared in Georgina a few days later: a male and female in their 60s from the same family tested positive Dec. 29 in what is believed to be community transmission, and a female in her 50s who had close contact with a U.K. variant case. Since then, one male in his 30s tested positive Jan. 1, a ma…

The eight UK Variant B.1.1.7 CARS CoV2 sequences cited below have not been released. They will be assigned UNK numbers and updated when public Canada/ON-PHL-20-UNK63/2020 Ontario Canada Canada/ON-PHL-20-UNK64/2020 Ontario Canada Canada/ON-PHL-20-UNK65/2020 Ontario Canada Canada/ON-PHL-20-UNK66/2020 Ontario Canada Canada/ON-PHL-20-UNK67/2020 Ontario Canada Canada/ON-PHL-20-UNK68/2020 Ontario Canada Canada/ON-PHL-20-UNK69/2020 Ontario Canada Ontario officials are reporting eight new cases of the UK variant of COVID-19 and they say that they have been unable to find a travel link with three of them, suggesting that the more contagious strain may alread…

ESR has released a 501.v2 SARS CoV2 variant sequence (New Zealand/21CV0061/2021 ) collected Jan 6 in Auckland.

ESR has released a 501.v2 SARS CoV2 variant sequence (New Zealand/21CV0062/2021 ) collected Jan 6 in Auckland.

ESR has released a 501.v2 SARS CoV2 variant sequence (New Zealand/21CV0064/2021 ) collected Jan 6 in Auckland.

ESR has released a 501.v2 SARS CoV2 variant sequence (New Zealand/21CV0102/2021) collected Jan 8 in Counties Manukau.

ESR has released a 501.v2 SARS CoV2 variant sequence (New Zealand/21CV0102/2021) collected Jan 12 in Auckland.

NIID has released (at GISAID) a P.1 Variant sequences (Japan/TY7_503/2021 ) collected Jan at Airport quarantine.

The B.1.1.7 variant described below has not been released. It will be assigned a UNK number, which will be upgraded upon release. Canada/ON-PHL-UNK230/2021 Penetanguishene Ontario Canada Simcoe Muskoka Health lists the outbreak as well as individuals linked to the outbreak, which will be designated as variant cases including the individual below who had the earliest episode date and will be assigned Canada/ON-PHL-21-UNK230/2021 45-64M 1/18 Penetanguishene Ontario Canada https://www.simcoemuskokahealth.org/MicroSites/Media/Health Stats/Instant Atlas/HealthMAPS_COVID_Dashboard20210129/index.html Waypoint Centre for Mental Health Ca…

13 California sequences reported in the latest CDC B.1.1.7 variant map have not been released. They will be assigned UNK numbers and will be updated when released. USA/CA-ALSR-6046/2021 1/7 San Diego California USA/CA-ALSR-5902/2020 12/17 San Diego California USA/CA-ALSR-6096/2021 1/7 San Diego California USA/CA-CDC-STM-UNK220/2021 California USA/CA-CDC-STM-UNK221/2021 California USA/CA-CDC-STM-UNK222/2021 California USA/CA-CDC-STM-UNK223/2021 California USA/CA-CDC-STM-UNK224/2021 California USA/CA-CDC-STM-UNK225/2021 California USA/CA-CDC-STM-UNK226/2021 California USA/CA-CDC-STM-UNK227/2021 California USA/CA-CDC-STM-UNK228/2021 California …

34 sequences reported in the latest CDC B.1.1.7 variant map have not been released. They will be assigned UNK numbers and will be updated when released. The distribution of the first 92 sequences from Florida are as follows: Brevard - 1 Broward - 28 Charlotte - 1 Collier - 1 Dade - 23 Escambia - 1 Hendry - 1 Hillsborough - 7 Lake - 1 Lee - 2 Martin - 1 Osceola - 2 Palm Beach - 9 Pasco - 1 Pinellas - 4 Polk - 1 Seminole - 6 Sumter - 1 Suwannee - 1 Volusia - 1 https://www.baynews9.com/fl/tampa/news/2021/01/29/seminole-county-identifies-6-cases-of-uk-covid-19-variant USA/FL-CDC-STM-UNK183/2021 Florida USA/FL-…

CDC has released (at GISAID) two B.1.1.7 SARS CoV2 Sequences from California USA/CA-CDC-STM-A100349/2021 1/6 31M California USA/CA-CDC-STM-A100377/2021 1/6 34M California

CDC has released (at GISAID) three B.1.1.7 SARS CoV2 Sequences from Florida USA/FL-CDC-STM-A100353/2021 1/5 37M Florida USA/FL-CDC-STM-A100316/2021 1/5 64M Florida USA/FL-CDC-STM-A100330/2021 1/5 55M Florida

Massachusetts State Public Health Laboratory has released (at GISAID) a B.1.1.7 SARS CoV2 Sequences (USA/MA-MASPHL-01436/2021) collected on Jan 5.

Instituto Adolfo Lutz has released (at GISAID) two P.1 Variant sequences (Brazil/SP-999/2021, Brazil/SP-1014/2021 ) collected Jan 4-15 in Sao Paulo

Instituto Adolfo Lutz has released (at GISAID) two P.1 Variant sequences (Brazil/SP-1029/2021, Brazil/SP-1030/2021 ) collected Jan 15-18 in Sao Paulo

Istituto Zooprofilattico Sperimentale dell’Abruzzo e Molise has released (at GISAID) three P.1 Variant sequences (Italy/ABR-IZSGC-TE30939/2021, Italy/ABR-IZSGC-TE30964/2021, Italy/ABR-IZSGC-TE30968/2021 ) collected Jan 18 in Abruzzo

University of Insubria has released (at GISAID) a P.1 Variant partial S Gene sequence (Italy//VA-UOI-brasil-20210122/2021 ) collected Jan 22 in Varese