Sequences (COVID)

Lauring Lab has released (at GISAID) four B.1.1.7 SARS CoV2 sequences collected in Michigan Jan 26-28 USA/MI-UM-10038012296/2021 1/26 Michigan USA/MI-UM-10038012106/2021 1/26 Michigan USA/MI-UM-10038050090/2021 1/28 Michigan USA/MI-UM-10038052582/2021 1/28Michigan

The number of B.1.1.7 cases in Florida is now 147. UNK numbers will be assigned to the most recent 22. USA/FL-CDC-STM-000003189/2021 1/15 Florida USA/FL-CDC-STM-000003159/2021 1/15 Florida USA/FL-CDC-STM-000003574/2021 1/17 Florida USA/FL-CDC-STM-000003549/2021 1/18 Florida USA/FL-CDC-STM-000003656/2021 1/18 Florida USA/FL-CDC-STM-000004150/2021 1/19 Florida USA/FL-CDC-STM-000004191/2021 1/19 Florida USA/FL-CDC-STM-000004112/2021 1/19 Florida USA/FL-CDC-STM-000004116/2021 1/19 Florida USA/FL-CDC-STM-000003532/2021 1/17 Florida USA/FL-CDC-STM-000003557/2021 1/17 Florida USA/FL-CDC-STM-000003592/2021 1/17 Florida USA/FL-CDC-STM-000003537/2021 1…

National Virus Reference Laboratory has released (at GISAID) a UK Variant B.1.1.7 sequence collected on Jan 19 in Dublin Ireland/D-NVRL-21IRL18110/2021 1/19 85+F Dublin Ireland

Instituto Adolfo Lutz has released (at GISAID) six P.1 (Brazil) variant sequences collected in Manaus Jan 15-22. Brazil/AM-1047/2021 1/22 74M Manaus Brazil Brazil/AM-1037/2021 1/19 49F Manaus Brazil Brazil/AM-1036/2021 1/19 52M Manaus Brazil Brazil/AM-1031/2021 1/19 83M Manaus Brazil Brazil/AM-1062/2021 1/19 59M Manaus Brazil Brazil/AM-1035/2021 1/15 45M Manaus Brazil

Instituto Adolfo Lutz has released (at GISAID) a P.1 (Brazil) variant sequence collected in Campinas Jan 15. Brazil/SP-1034/2021 1/15 78F Sao Paulo / Campinas

National Institute of Infectious Diseases has released (at GISAID) a P.1 (Brazil) variant sequence collected in Jan at Airport quarantine. Japan/TY7-503/2021

Evandro Chagas Institute has released (at GISAID) two P.1 (Brazil) variant sequences collected Jan8-107 in Para Brazil/PA-IEC-177366/2021 1/8 25F Para Brazil Brazil/PA-IEC-177365/2021 1/10 56M Para Brazil

Instituto Nacional de Salud- has released (at GISAID) a P.1 (Brazil) variant sequence collected on Jan 7 in Amazonas Colombia/AMA-INS-VG-391/2021 1/7 78M Amazonas

Gorgas memorial Institute For Health Studies has released (at GISAID) a 501.v2 (B.1.351) variant sequence collected on Jan 11 in Colon Panama/655071/2021 1/11 39M Colon Panama

The CDC variant table cites 125 B.1.1.7 cases for Florida. The 32 sequences that have not been released will be give UNK numbers, which will be updated upon release. USA/FL-CDC-UNK361/2021 Florida USA/FL-CDC-UNK362/2021 Florida USA/FL-CDC-UNK363/2021 Florida USA/FL-CDC-UNK364/2021 Florida USA/FL-CDC-UNK365/2021 Florida USA/FL-CDC-UNK366/2021 Florida USA/FL-CDC-UNK367/2021 Florida USA/FL-CDC-UNK368/2021 Florida USA/FL-CDC-UNK369/2021 Florida USA/FL-CDC-UNK370/2021 Florida USA/FL-CDC-UNK371/2021 Florida USA/FL-CDC-UNK372/2021 Florida USA/FL-CDC-UNK373/2021 Florida USA/FL-CDC-UNK374/2021 Florida USA/FL-CDC-UNK375/2021 Florida USA/FL-CDC…

Johns Hopkins Hospital has released (at GISAID) a B.1.1.7 variant sequence collected Jan 13. USA/MD-HP01355/2021 1/13 22F Maryland

Simcoe Muskoka Health lists COVID positive cases associated with various outbreaks at link below. The ten cases listed as outbreak related for the Bradford Long Term Care Facility will be assigned the following UNK numbers which will be updated when sequences are released. Canada/ON-PHL-21-UNK369/2021 80+F 1/27 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK368/2021 80+F 1/26 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK367/2021 80+F 1/27 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK366/2021 45-64M 1/23 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK365/2021 45-64M 1/25 Bradford West Gwillimbur…

Simcoe Muskoka Health lists COVID positive cases associated with various outbreaks at link below. The six cases listed as outbreak related for the mental health facility in Penetanguishene will be assigned the following UNK numbers which will be updated when sequences are released. Canada/ON-PHL-21-UNK354/2021 65-79M 1/27 Penetanguishene Ontario Canada Canada/ON-PHL-21-UNK355/2021 45-64M 1/26 Penetanguishene Ontario Canada Canada/ON-PHL-21-UNK356/2021 45-64M 1/25 Penetanguishene Ontario Canada Canada/ON-PHL-21-UNK357/2021 65-79M 1/22 Penetanguishene Ontario Canada Canada/ON-PHL-21-UNK358/2021 34-44F 1/22 Penetanguishene Ontario Canada Canada/ON-PHL-…

LACPHL has released (at GISAID) a B.1.1.7 SARS CoV2 sequence collected in Los Angeles County Jan 18. USA/CA-LACPHL-AF00274/2021 1/18 Los Angeles County California

UW Virology Lab has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/CA-UW-63893941/2021, from California collected Jan 8.

CDC, as of Jan 30, lists ten B.1.1.7 variant cases in Pennsylvania in the table linked below. Therefore, the 4 most recent cases will be assigned UNK numbers, which will be updated when sequences are released. USA/PA-CDC-UNK350/2021 Pennsylvania USA/PA-CDC-UNK351/2021 Pennsylvania USA/PA-CDC-UNK352/2021 Pennsylvania USA/PA-CDC-UNK353/2021 Pennsylvania USA/PA-CDC-STM-000004177/2021 1/20 55F Pennsylvania USA/PA-CDC-STM-000003009/2021 1/15 62F Pennsylvania USA/PA-CDC-STM-000003066/2021 1/16 31M Pennsylvania USA/PA-CDC-STM-000002993/2021 1/17 74F Pennsylvania Pennsylvania 10 https://w…

Arizona State University has released (at GISAID) three B.1.1.7 SARS CoV2 sequence collected Jan 5-7. USA/AZ-ASU2341/2021 1/5 Arizona USA/AZ-ASU2340/2021 1/7 Arizona USA/AZ-ASU2339/2021 1/7 Arizona The Arizona Department of Health Services (ADHS), the Maricopa County Department of Public Health (MCDPH), Pinal County Public Health Services District, and Arizona State University (ASU) reported today that the so-called U.K. COVID-19 variant, B.1.1.7, has been confirmed in three test samples from the state. https://www.azdhs.gov/director/public-information-office/index.php#news-release-012921

Oregon SARS-CoV-2 Genome Sequencing Center has released (at GISAID) a B.1.1.7 SARS CoV2 sequence collected in Washington County Jan 11.

The sequence of the Philadelphia case has not been released and will be assigned a UNK number USA/PA_UNK77/2020 Health officials say a woman in her 50s, who lives in both Philadelphia and Bucks County, was found to have the UK variant. She became sick at the end of December. She was briefly hospitalized and is now recovering. She had contact with someone who became infected after traveling to England. https://6abc.com/covid-19-variant-new-coronavirus-in-pennsylvania-dauphin-county/9688618/

CDC has released (at GISAID) two B.1.1.7 SARS CoV2 sequences collected in Pennsylvania Jan 10-15. USA/PA-CDC-STM-0000013-H08/2021 1/15 Montgomery County Pennsylvania USA/PA-CDC-STM-0000025-C03/2021 1/10 Montgomery County Pennsylvania

Sequences for the adult from Jefferson County has not been released. It will be assigned a UNK number, which will be updated upon release. USA/AL-CDC-UNK349/2021 Jefferson County Alabama The Alabama Department of Public Health reports that a new and more highly transmissible COVID-19 variant, B.1.1.7, has been identified in three Alabama residents. Health officials say two of those Alabamians are from Montgomery County and one is from Jefferson County. Two are children under 19 and one is an adult. https://www.wsfa.com/2021/01/27/states-first-cases-new-covid-variant-found-montgomery-jefferson-counties/

Sequences for the two children from Montgomery County have not been released. they will be assigned UNK numbers, which will be updated upon release. USA/AL-CDC-UNK347/2021 Montgomery County Alabama USA/AL-CDC-UNK348/2021 Montgomery County Alabama The Alabama Department of Public Health reports that a new and more highly transmissible COVID-19 variant, B.1.1.7, has been identified in three Alabama residents. Health officials say two of those Alabamians are from Montgomery County and one is from Jefferson County. Two are children under 19 and one is an adult. https://www.wsfa.com/2021/01/27/states-first-cases-new-covid-variant…

The sequence described below has not been released. It will be assigned a UNK number, which will be updated upon release. USA/SC-DHEC-UNK346/2021 Lowcountry South Carolina The case, an adult from the Lowcountry region, has an international travel history. https://scdhec.gov/news-releases/south-carolina-public-health-officials-detect-states-first-known-case-covid-19

Johns Hopkins Hospital has released (at GISAID) a 501.v2 (B.1.351) variant sequence collected on Jan 21 in Maryland USA/MD-HP01542/2021 1/21 Maryland

Sequences from the cases described below have not been released. They will be assigned UNK numbers which will be upgraded upon release Canada/ON-PHL-21-UNK340/2021 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK341/2021 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK342/2021 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK343/2021 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK344/2021 Bradford West Gwillimbury Ontario Canada Canada/ON-PHL-21-UNK345/2021 Bradford West Gwillimbury Ontario Canada The Simcoe Muskoka Health website has listed the COVID positive individuals linked to the Bradford outbreak…