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Pandemic Potentials Blog

Sequences (COVID)

  1. Three UK Variant B.1.1.7 SARS CoV2 Sequences From Tippecanoe County Indiana

    Started by niman,

    Carpi Lab has released (at GISAID) Three UK variant (B.1.1.7) sequences collected in Tippecanoe County Jan 22-28 USA/IN-PU-LH000115045/2021 1/22 Tippecanoe County Indiana USA/IN-PU-LH000145107/2021 1/28 Tippecanoe County Indiana USA/IN-PU-LH000145185/2021 1/26 Tippecanoe County Indiana

    • 3 replies
    • 327 views
    niman

  2. UK Variant B.1.1.7 SARS CoV2 Sequence From Glasgow Scotland With E484Q

    Started by niman,

    COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected in Glasgow on Jan 17 Scotland/QEUH-10673CF/2021 1/17 Glasgow Scotland

    • 1 reply
    • 265 views
    niman

  3. UK Variant B.1.1.7 SARS CoV2 Sequence From Alderley Park England With E484K

    Started by niman,

    COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected in Alderley Park on Feb 9 England/ALDP-1279207/2021 2/9 Alderley Park England

    • 1 reply
    • 255 views
    niman

  4. UK Variant B.1.1.7 SARS CoV2 Sequence From Louisiana

    Started by niman,

    Below is Helix in progress B.1.1.7 cases in Louisiana https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/LA-CDC-STM-000005831/2021 11-20M Louisiana

    • 1 reply
    • 241 views
    niman

  5. Nine UK Variant B.1.1.7 SARS CoV2 Sequences From Louisiana

    Started by niman,

    CDC has released (at GISAID) nine UK variant (B.1.1.7) sequences collected Jan 11-31 USA/LA-CDC-9MFQ-8827/2021 1/13 Louisiana USA/LA-CDC-9MYH-8962/2021 1/21 50F Louisiana USA/LA-CDC-9MYR-8964/2021 1/20 71F Louisiana USA/LA-CDC-9NMS-9137/2021 1/31 Louisiana USA/LA-CDC-9NMN-9136/2021 1/29 Louisiana USA/LA-CDC-9NLY-9131/2021 1/27 Louisiana USA/LA-CDC-STM-000001606/2021 1/11 52M Louisiana USA/LA-CDC-STM-000005393/2021 1/25 48F Louisiana USA/LA-CDC-STM-000004235/2021 1/22 39F Louisiana

    • 9 replies
    • 421 views
    niman

  6. P.1 Variant SARS CoV2 Sequence From Maryland Sans K417T

    Started by niman,

    Maryland Public Health Laboratory has released (at GISAID) a P.1 variant sequence collected Jan 17 USA/MD-MDH-0841/2021 1/17

    • 1 reply
    • 259 views
    niman

  7. UK Variant B.1.1.7 SARS CoV2 Sequence From Wales With E484Z

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Wales on Jan 23 Wales/ALDP-115BC0E/2021 1/23 Wales

    • 1 reply
    • 216 views
    niman

  8. UK Variant B.1.1.7 SARS CoV2 Sequence From Wales With E484A

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Wales on Feb 3 Wales/ALDP-1220454/2021 2/3 Wales E484A Wales/ALDP-12205D9/2021 2/3 Wales E484A

    • 2 replies
    • 313 views
    niman

  9. 501.v2 SARS-CoV2 COVID Sequence From Middlesex County Massachusetts

    Started by niman,

    Broad Institute of Harvard and MIT has released (at GISAID) a B.1.351 (501.V2) SARS CoV sequence collected Jan 27 USA/MA-Broad_CRSP-00844/2021 1/27

    • 2 replies
    • 286 views
    niman

  10. Eight UK Variant B.1.1.7 SARS CoV2 Sequences From Georgia

    Started by niman,

    CDC has released (at GISAID) EIGHT UK variant (B.1.1.7) sequences collected Jan 12-25 USA/GA-CDC-STM-000003616/2021 1/18 11F Georgia USA/GA-CDC-STM-000004145/2021 1/19 45F Georgia USA/GA-CDC-STM-000002402/2021 1/12 18F Georgia USA/GA-CDC-STM-000002405/2021 1/12 44F Georgia USA/GA-CDC-STM-000002902/2021 1/16 23F Georgia USA/GA-CDC-9MY7-8960/2021 1/22 55M Georgia USA/GA-CDC-9MY2-8959/2021 1/22 36M Georgia USA/GA-CDC-9MYC-8961/2021 1/25 47F Georgia

    • 8 replies
    • 450 views
    niman

  11. 20 UK Variant B.1.1.7 SARS CoV2 Sequences From Georgia

    Started by niman,

    20 Georgia B.1.1.7 sequences in progress at Helix https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/GA-CDC-STM-0000058-B10/2021 51-60F Georgia USA/GA-CDC-STM-0000024-E01/2021 41-50F Georgia USA/GA-CDC-STM-0000013-F02/2021 41-50F Georgia USA/GA-CDC-STM-0000013-H01/2021 11-20F Georgia USA/GA-CDC-STM-0000016-B12/2021 41-50F Georgia USA/GA-CDC-STM-0000030-B04/2021 21-30M Georgia USA/GA-CDC-STM-0000029-B01/2021 21-30F Georgia USA/GA-CDC-STM-0000036-F02/2021 51-60F Georgia USA/GA-CDC-STM-0000036-H02/2021 11-20F Georgia USA/GA-CDC-STM-0000041-C06/2021 51-60M Georgia USA/GA-CDC-STM-0000041-E06/2021 41-50F Georgia USA/GA-CDC-STM…

    • 19 replies
    • 761 views
    niman

  12. 13 UK Variant B.1.1.7 SARS CoV2 Sequences From Pennsylvania

    Started by niman,

    13 Pennsylvania B.1.1.7 sequences in progress at Helix https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/PA-CDC-STM-0000030-A02/2021 61-70F Pennsylvania USA/PA-CDC-STM-0000030-B09/2021 31-40M Pennsylvania USA/PA-CDC-STM-0000029-E12/2021 71-80F Pennsylvania USA/PA-CDC-STM-0000035-B06/2021 51-60M Pennsylvania USA/PA-CDC-STM-0000041-E10/2021 51-60F Pennsylvania USA/PA-CDC-STM-0000042-E07/2021 61-70M Pennsylvania USA/PA-CDC-STM-0000050-E02/2021 51-60F Pennsylvania USA/PA-CDC-STM-0000050-E09/2021 21-30 Pennsylvania USA/PA-CDC-STM-0000050-F09/2021 41-50M Pennsylvania USA/PA-CDC-STM-0000056-A03/2021 21-30M Pennsylvania USA/PA-CD…

    • 13 replies
    • 537 views
    niman

  13. 24 UK Variant B.1.1.7 SARS CoV2 Sequence From Texas

    Started by niman,

    Texas B.1.1.7 sequences in progress at Helix https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/TX-CDC-STM-0000035-F03/2021 41-50F Texas USA/TX-CDC-STM-0000036-C08/2021 51-60M Texas USA/TX-CDC-STM-0000036-E06/2021 11-20M Texas USA/TX-CDC-STM-0000042-H02/2021 41-50M Texas USA/TX-CDC-STM-0000043-B01/2021 41-50M Texas USA/TX-CDC-STM-0000043-G12/2021 51-60F Texas USA/TX-CDC-STM-0000042-C09/2021 21-30F Texas USA/TX-CDC-STM-0000042-H09/2021 21-30M Texas USA/TX-CDC-STM-0000050-B06/2021 11-20M Texas USA/TX-CDC-STM-0000054-B10/2021 11-20M Texas USA/TX-CDC-STM-0000054-C10/2021 71-80F Texas USA/TX-CDC-STM-0000054-D09/2021 41-50M Tex…

    • 22 replies
    • 918 views
    niman

  14. P.1 Variant SARS CoV2 Sequence From Jalisco Mexico ex-Brazil

    Started by niman,

    INDRE has released (at GISAID) a P.1 (Brazil) variant sequence collected on Jan 28 in Jalisco Mexico/JAL-InDRE_245/2021 1/28 19F Jaliso Mexico

    • 1 reply
    • 201 views
    niman

  15. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Cambridge England With E484K

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Cambridge Jan 25 England/CAMC-11AAAAC/2021 1/25 Cambridge England England/CAMC-11AAA8E/2021 1/25 Cambridge England

    • 2 replies
    • 219 views
    niman

  16. 25 UK Variant B.1.1.7 SARS CoV2 Sequences From Texas

    Started by niman,

    CDC has released (at GISAID) 25 UK variant (B.1.1.7) sequences collected Jan 7-25 USA/TX-CDC-9NPP-9158/2021 1/7 49F Texas USA/TX-CDC-9MNS-8885/2021 1/18 Texas USA/TX-CDC-9MNX-8886/2021 1/19 Texas USA/TX-CDC-9N2I-8991/2021 1/20 32 Texas USA/TX-CDC-9N2D-8990/2021 1/20 14 Texas USA/TX-CDC-9N1Y-8987/2021 1/20 30 Texas USA/TX-CDC-9N2S-8993/2021 1/22 28 Texas USA/TX-CDC-9N3H-8998/2021 1/23 28 Texas USA/TX-CDC-9N3W-9001/2021 1/25 22 Texas USA/TX-CDC-9N1E-8983/2021 1/20 7 Texas USA/TX-CDC-9N1O-8985/2021 1/21 17 Texas USA/TX-CDC-9N41-9002/2021 1/25 76 Texas USA/TX-CDC-9N23-8988/2021 1/21 51 Texas USA/TX-CDC-9N37-8996/2021 1/23 32 Texas USA/TX…

    • 25 replies
    • 1k views
    niman

  17. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Texas

    Started by niman,

    CDC has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 11-17 USA/TX-CDC-STM-000003659/2021 1/17 52M Texas USA/TX-CDC-STM-0000025-B11/2021 1/11 Texas

    • 2 replies
    • 191 views
    niman

  18. UK Variant B.1.1.7 SARS CoV2 Sequence From Houston Texas

    Started by niman,

    Houston Health Dept has released (at GISAID) a UK variant (B.1.1.7) sequences collected Jan 9 in Houston USA/TX-HHD-2102095378/2021 1/9 57 Texas

    • 1 reply
    • 179 views
    niman

  19. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Holland Texas

    Started by niman,

    Baylor Scott & White has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 16- Feb 1 in Holland USA/TX-BSW-KU51457/2021 2/1 17F Holland Texas USA/TX-BSWTemple-HO68290/2021 1/16 24F Holland Texas

    • 2 replies
    • 213 views
    niman

  20. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Norwich England With E484K

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Norwich in 2021 England/ARCH-000052C6/2021 2021 Norwich England England/ARCH-000052H2/2021 2021 Norwich England

    • 2 replies
    • 224 views
    niman

  21. Three UK Variant B.1.1.7 SARS CoV2 Sequences From Alderley Park England With E484K

    Started by niman,

    COG-UK has released (at GISAID) three UK variant (B.1.1.7) sequences collected Jan 15-24 from Alderley Park England/ALDP-1182D0B/2021 1/25 Alderley Park England England/ALDP-115B6B5/2021 1/24 Alderley Park England England/ALDP-106A9BB/2021 1/15 Alderley Park England

    • 3 replies
    • 274 views
    niman

  22. 189 UK Variant B.1.1.7 SARS CoV2 Sequences From Florida

    Started by niman,

    The CDC update on B.1.1.7 cases in Florida is 347. Sequences not yet released will be assigned UNK numbers which will be updated when released. FL-CDC-STM-UNK703/2021 Florida FL-CDC-STM-UNK704/2021 Florida FL-CDC-STM-UNK705/2021 Florida FL-CDC-STM-UNK706/2021 Florida FL-CDC-STM-UNK707/2021 Florida FL-CDC-STM-UNK708/2021 Florida FL-CDC-STM-UNK709/2021 Florida FL-CDC-STM-UNK710/2021 Florida FL-CDC-STM-UNK711/2021 Florida FL-CDC-STM-UNK712/2021 Florida FL-CDC-STM-UNK713/2021 Florida FL-CDC-STM-UNK714/2021 Florida FL-CDC-STM-UNK715/2021 Florida FL-CDC-STM-UNK716/2021 Florida FL-CDC-STM-UNK717/2021 Florida FL-CDC-STM-UNK718/2021 Florida FL…

    • 157 replies
    • 5.4k views
    niman

  23. 501.v2 SARS CoV2 Variant B.1.351 Sequence From New York New York

    Started by niman,

    Uhlemann Laboratory has released (at GISAID) a B.1.351 (501.V2) SARS CoV sequence collected Jan 2 in New York City USA/NY-UL-NP5080/2021 1/2 New York New York

    • 1 reply
    • 257 views
    niman

  24. 46 UK Variant B.1.1.7 SARS CoV2 Sequences From New York New York

    Started by niman,

    Pandemic Response Lab has released (at GISAID) 46 UK variant (B.1.1.7) sequences collected Jan 18 - Feb 9 from New York City USA/NY-PRL-2021_0210_08E10/2021 2/8 38M New York New York USA/NY-PRL-2021_0210_07H06/2021 2/9 46F New York New York USA/NY-PRL-2021_0210_07G11/2021 2/9 35F New York New York USA/NY-PRL-2021_0210_07E04/2021 2/8 37M New York New York USA/NY-PRL-2021_0210_07B10/2021 2/9 20M New York New York USA/NY-PRL-2021_0210_06H07/2021 2/8 10M New York New York USA/NY-PRL-2021_0210_06F02/2021 2/9 35M New York New York USA/NY-PRL-2021_0210_06E04/2021 2/8 14M New York New York USA/NY-PRL-2021_0210_06E03/2021 2/9 15F New York New York USA/NY…

    • 45 replies
    • 1.5k views
    niman

  25. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Alderley Park England With E484K

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected Feb 2 from Alderley Park England/ALDP-12032D5/2021 2/2 Alderley Park England England/ALDP-121F76E/2021 2/2 Alderley Park England

    • 2 replies
    • 280 views
    niman

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