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Pandemic Potentials Blog

Sequences (COVID)

  1. Carpi Lab has released (at GISAID) Three UK variant (B.1.1.7) sequences collected in Tippecanoe County Jan 22-28 USA/IN-PU-LH000115045/2021 1/22 Tippecanoe County Indiana USA/IN-PU-LH000145107/2021 1/28 Tippecanoe County Indiana USA/IN-PU-LH000145185/2021 1/26 Tippecanoe County Indiana

    • 3 replies
    • 325 views
  2. COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected in Glasgow on Jan 17 Scotland/QEUH-10673CF/2021 1/17 Glasgow Scotland

    • 1 reply
    • 262 views
  3. COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected in Alderley Park on Feb 9 England/ALDP-1279207/2021 2/9 Alderley Park England

    • 1 reply
    • 252 views
  4. Below is Helix in progress B.1.1.7 cases in Louisiana https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/LA-CDC-STM-000005831/2021 11-20M Louisiana

    • 1 reply
    • 238 views
  5. CDC has released (at GISAID) nine UK variant (B.1.1.7) sequences collected Jan 11-31 USA/LA-CDC-9MFQ-8827/2021 1/13 Louisiana USA/LA-CDC-9MYH-8962/2021 1/21 50F Louisiana USA/LA-CDC-9MYR-8964/2021 1/20 71F Louisiana USA/LA-CDC-9NMS-9137/2021 1/31 Louisiana USA/LA-CDC-9NMN-9136/2021 1/29 Louisiana USA/LA-CDC-9NLY-9131/2021 1/27 Louisiana USA/LA-CDC-STM-000001606/2021 1/11 52M Louisiana USA/LA-CDC-STM-000005393/2021 1/25 48F Louisiana USA/LA-CDC-STM-000004235/2021 1/22 39F Louisiana

    • 9 replies
    • 419 views
  6. Maryland Public Health Laboratory has released (at GISAID) a P.1 variant sequence collected Jan 17 USA/MD-MDH-0841/2021 1/17

    • 1 reply
    • 258 views
  7. COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Wales on Jan 23 Wales/ALDP-115BC0E/2021 1/23 Wales

    • 1 reply
    • 213 views
  8. COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Wales on Feb 3 Wales/ALDP-1220454/2021 2/3 Wales E484A Wales/ALDP-12205D9/2021 2/3 Wales E484A

    • 2 replies
    • 310 views
  9. Broad Institute of Harvard and MIT has released (at GISAID) a B.1.351 (501.V2) SARS CoV sequence collected Jan 27 USA/MA-Broad_CRSP-00844/2021 1/27

    • 2 replies
    • 283 views
  10. CDC has released (at GISAID) EIGHT UK variant (B.1.1.7) sequences collected Jan 12-25 USA/GA-CDC-STM-000003616/2021 1/18 11F Georgia USA/GA-CDC-STM-000004145/2021 1/19 45F Georgia USA/GA-CDC-STM-000002402/2021 1/12 18F Georgia USA/GA-CDC-STM-000002405/2021 1/12 44F Georgia USA/GA-CDC-STM-000002902/2021 1/16 23F Georgia USA/GA-CDC-9MY7-8960/2021 1/22 55M Georgia USA/GA-CDC-9MY2-8959/2021 1/22 36M Georgia USA/GA-CDC-9MYC-8961/2021 1/25 47F Georgia

    • 8 replies
    • 448 views
  11. 20 Georgia B.1.1.7 sequences in progress at Helix https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/GA-CDC-STM-0000058-B10/2021 51-60F Georgia USA/GA-CDC-STM-0000024-E01/2021 41-50F Georgia USA/GA-CDC-STM-0000013-F02/2021 41-50F Georgia USA/GA-CDC-STM-0000013-H01/2021 11-20F Georgia USA/GA-CDC-STM-0000016-B12/2021 41-50F Georgia USA/GA-CDC-STM-0000030-B04/2021 21-30M Georgia USA/GA-CDC-STM-0000029-B01/2021 21-30F Georgia USA/GA-CDC-STM-0000036-F02/2021 51-60F Georgia USA/GA-CDC-STM-0000036-H02/2021 11-20F Georgia USA/GA-CDC-STM-0000041-C06/2021 51-60M Georgia USA/GA-CDC-STM-0000041-E06/2021 41-50F Georgia USA/GA-CDC-STM…

    • 19 replies
    • 758 views
  12. 13 Pennsylvania B.1.1.7 sequences in progress at Helix https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/PA-CDC-STM-0000030-A02/2021 61-70F Pennsylvania USA/PA-CDC-STM-0000030-B09/2021 31-40M Pennsylvania USA/PA-CDC-STM-0000029-E12/2021 71-80F Pennsylvania USA/PA-CDC-STM-0000035-B06/2021 51-60M Pennsylvania USA/PA-CDC-STM-0000041-E10/2021 51-60F Pennsylvania USA/PA-CDC-STM-0000042-E07/2021 61-70M Pennsylvania USA/PA-CDC-STM-0000050-E02/2021 51-60F Pennsylvania USA/PA-CDC-STM-0000050-E09/2021 21-30 Pennsylvania USA/PA-CDC-STM-0000050-F09/2021 41-50M Pennsylvania USA/PA-CDC-STM-0000056-A03/2021 21-30M Pennsylvania USA/PA-CD…

    • 13 replies
    • 534 views
  13. Texas B.1.1.7 sequences in progress at Helix https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/TX-CDC-STM-0000035-F03/2021 41-50F Texas USA/TX-CDC-STM-0000036-C08/2021 51-60M Texas USA/TX-CDC-STM-0000036-E06/2021 11-20M Texas USA/TX-CDC-STM-0000042-H02/2021 41-50M Texas USA/TX-CDC-STM-0000043-B01/2021 41-50M Texas USA/TX-CDC-STM-0000043-G12/2021 51-60F Texas USA/TX-CDC-STM-0000042-C09/2021 21-30F Texas USA/TX-CDC-STM-0000042-H09/2021 21-30M Texas USA/TX-CDC-STM-0000050-B06/2021 11-20M Texas USA/TX-CDC-STM-0000054-B10/2021 11-20M Texas USA/TX-CDC-STM-0000054-C10/2021 71-80F Texas USA/TX-CDC-STM-0000054-D09/2021 41-50M Tex…

    • 22 replies
    • 915 views
  14. INDRE has released (at GISAID) a P.1 (Brazil) variant sequence collected on Jan 28 in Jalisco Mexico/JAL-InDRE_245/2021 1/28 19F Jaliso Mexico

    • 1 reply
    • 199 views
  15. COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Cambridge Jan 25 England/CAMC-11AAAAC/2021 1/25 Cambridge England England/CAMC-11AAA8E/2021 1/25 Cambridge England

    • 2 replies
    • 215 views
  16. CDC has released (at GISAID) 25 UK variant (B.1.1.7) sequences collected Jan 7-25 USA/TX-CDC-9NPP-9158/2021 1/7 49F Texas USA/TX-CDC-9MNS-8885/2021 1/18 Texas USA/TX-CDC-9MNX-8886/2021 1/19 Texas USA/TX-CDC-9N2I-8991/2021 1/20 32 Texas USA/TX-CDC-9N2D-8990/2021 1/20 14 Texas USA/TX-CDC-9N1Y-8987/2021 1/20 30 Texas USA/TX-CDC-9N2S-8993/2021 1/22 28 Texas USA/TX-CDC-9N3H-8998/2021 1/23 28 Texas USA/TX-CDC-9N3W-9001/2021 1/25 22 Texas USA/TX-CDC-9N1E-8983/2021 1/20 7 Texas USA/TX-CDC-9N1O-8985/2021 1/21 17 Texas USA/TX-CDC-9N41-9002/2021 1/25 76 Texas USA/TX-CDC-9N23-8988/2021 1/21 51 Texas USA/TX-CDC-9N37-8996/2021 1/23 32 Texas USA/TX…

    • 25 replies
    • 1k views
  17. CDC has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 11-17 USA/TX-CDC-STM-000003659/2021 1/17 52M Texas USA/TX-CDC-STM-0000025-B11/2021 1/11 Texas

    • 2 replies
    • 189 views
  18. Houston Health Dept has released (at GISAID) a UK variant (B.1.1.7) sequences collected Jan 9 in Houston USA/TX-HHD-2102095378/2021 1/9 57 Texas

    • 1 reply
    • 176 views
  19. Baylor Scott & White has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 16- Feb 1 in Holland USA/TX-BSW-KU51457/2021 2/1 17F Holland Texas USA/TX-BSWTemple-HO68290/2021 1/16 24F Holland Texas

    • 2 replies
    • 212 views
  20. COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected in Norwich in 2021 England/ARCH-000052C6/2021 2021 Norwich England England/ARCH-000052H2/2021 2021 Norwich England

    • 2 replies
    • 219 views
  21. COG-UK has released (at GISAID) three UK variant (B.1.1.7) sequences collected Jan 15-24 from Alderley Park England/ALDP-1182D0B/2021 1/25 Alderley Park England England/ALDP-115B6B5/2021 1/24 Alderley Park England England/ALDP-106A9BB/2021 1/15 Alderley Park England

    • 3 replies
    • 271 views
  22. The CDC update on B.1.1.7 cases in Florida is 347. Sequences not yet released will be assigned UNK numbers which will be updated when released. FL-CDC-STM-UNK703/2021 Florida FL-CDC-STM-UNK704/2021 Florida FL-CDC-STM-UNK705/2021 Florida FL-CDC-STM-UNK706/2021 Florida FL-CDC-STM-UNK707/2021 Florida FL-CDC-STM-UNK708/2021 Florida FL-CDC-STM-UNK709/2021 Florida FL-CDC-STM-UNK710/2021 Florida FL-CDC-STM-UNK711/2021 Florida FL-CDC-STM-UNK712/2021 Florida FL-CDC-STM-UNK713/2021 Florida FL-CDC-STM-UNK714/2021 Florida FL-CDC-STM-UNK715/2021 Florida FL-CDC-STM-UNK716/2021 Florida FL-CDC-STM-UNK717/2021 Florida FL-CDC-STM-UNK718/2021 Florida FL…

    • 157 replies
    • 5.4k views
  23. Uhlemann Laboratory has released (at GISAID) a B.1.351 (501.V2) SARS CoV sequence collected Jan 2 in New York City USA/NY-UL-NP5080/2021 1/2 New York New York

    • 1 reply
    • 254 views
  24. Pandemic Response Lab has released (at GISAID) 46 UK variant (B.1.1.7) sequences collected Jan 18 - Feb 9 from New York City USA/NY-PRL-2021_0210_08E10/2021 2/8 38M New York New York USA/NY-PRL-2021_0210_07H06/2021 2/9 46F New York New York USA/NY-PRL-2021_0210_07G11/2021 2/9 35F New York New York USA/NY-PRL-2021_0210_07E04/2021 2/8 37M New York New York USA/NY-PRL-2021_0210_07B10/2021 2/9 20M New York New York USA/NY-PRL-2021_0210_06H07/2021 2/8 10M New York New York USA/NY-PRL-2021_0210_06F02/2021 2/9 35M New York New York USA/NY-PRL-2021_0210_06E04/2021 2/8 14M New York New York USA/NY-PRL-2021_0210_06E03/2021 2/9 15F New York New York USA/NY…

    • 45 replies
    • 1.5k views
  25. COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected Feb 2 from Alderley Park England/ALDP-12032D5/2021 2/2 Alderley Park England England/ALDP-121F76E/2021 2/2 Alderley Park England

    • 2 replies
    • 277 views

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