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Pandemic Potentials Blog

Sequences (COVID)

  1. Sequences have not been released for the B.1.1.7 cases below. Assigned UNK numbers will be updated upon release USA/SC-DHEC-UNK1003/2021 Pee Dee South Carolina Low Country 2 Pee Dee 1 https://scdhec.gov/covid19/mis-c-covid-19-variants

    • 1 reply
    • 216 views
  2. Sequences have not been released for the B.1.1.7 cases below. Assigned UNK numbers will be updated upon release USA/SC-DHEC-UNK1002/2021 Lowcountry South Carolina Low Country 2 Pee Dee 1 https://scdhec.gov/covid19/mis-c-covid-19-variants

    • 1 reply
    • 196 views
  3. Sequences for most of the 501.v2 variant cases cited below on the South Carolina website have not been released. The assigned UNK numbers will be updated upon release. USA/SC-DHEC-UNK999/2021 Lowcountry South Carolina USA/SC-DHEC-UNK1000/2021 Lowcountry South Carolina USA/SC-DHEC-UNK1001/2021 Lowcountry South Carolina Low Country 5 Midlands 1 Pee Dee 15 https://scdhec.gov/covid19/mis-c-covid-19-variants

    • 3 replies
    • 294 views
  4. Sequences for most of the 501.v2 variant cases cited below on the South Carolina website have not been released. The assigned UNK numbers will be updated upon release. USA/SC-DHEC-UNK998/2021 Midlands South Carolina Low Country 5 Midlands 1 Pee Dee 15 https://scdhec.gov/covid19/mis-c-covid-19-variants

    • 1 reply
    • 205 views
  5. Sequences for most of the 501.v2 variant cases cited below on the South Carolina website have not been released. The assigned UNK numbers will be updated upon release. USA/SC-DHEC-UNK994/2021 Pee Dee South Carolina USA/SC-DHEC-UNK995/2021 Pee Dee South Carolina USA/SC-DHEC-UNK996/2021 Pee Dee South Carolina USA/SC-DHEC-UNK997/2021 Pee Dee South Carolina USA/SC-CDC-LC0010408/2021 1/26 South Carolina Low Country 5 Midlands 1 Pee Dee 15 https://scdhec.gov/covid19/mis-c-covid-19-variants

    • 4 replies
    • 332 views
  6. Oregon SARS-CoV-2 Genome Sequencing Center has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 8 in Lane County USA/OR-OHSU-PHL00043/2021 2/8 49M Lane County Oregon

    • 2 replies
    • 264 views
  7. Oregon SARS-CoV-2 Genome Sequencing Center has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 3 in Marion County USA/OR-OHSU-PHL00032/2021 2/3 10F Marion County Oregon

    • 2 replies
    • 308 views
  8. Sequences from the 90 confirmed cases described below have not been released. Assigned UNK numbers will be updated upon release. USA/MI-MDHHS-UNK903/2021Ionia Michigan USA/MI-MDHHS-UNK904/2021Ionia Michigan USA/MI-MDHHS-UNK905/2021Ionia Michigan USA/MI-MDHHS-UNK906/2021Ionia Michigan USA/MI-MDHHS-UNK907/2021Ionia Michigan USA/MI-MDHHS-UNK908/2021Ionia Michigan USA/MI-MDHHS-UNK909/2021Ionia Michigan USA/MI-MDHHS-UNK910/2021Ionia Michigan USA/MI-MDHHS-UNK911/2021Ionia Michigan USA/MI-MDHHS-UNK912/2021Ionia Michigan USA/MI-MDHHS-UNK913/2021Ionia Michigan USA/MI-MDHHS-UNK914/2021Ionia Michigan USA/MI-MDHHS-UNK915/2021Ionia Michigan USA/MI-MDHHS…

    • 77 replies
    • 2.5k views
  9. Pandemic Response Lab has released (at GISAID) 49 UK variant (B.1.1.7) sequences collected Feb 6-15 USA/NY-PRL-2021_02_17_00L04/2021 2/13 58M New York New York USA/NY-PRL-2021_02_17_00K21/2021 2/13 30F New York New York USA/NY-PRL-2021_02_17_00I12/2021 2/13 50F New York New York USA/NY-PRL-2021_02_17_00E19/2021 2/13 53F New York New York USA/NY-PRL-2021_02_17_00D05/2021 2/15 71F New York New York USA/NY-PRL-2021_02_17_00C11/2021 2/15 52F New York New York USA/NY-PRL-2021_02_15_03H02/2021 2/14 58F New York New York USA/NY-PRL-2021_02_15_03G03/2021 2/14 21M New York New York USA/NY-PRL-2021_02_15_03C01/2021 2/13 12M New York New York USA/NY-PRL…

    • 46 replies
    • 1.5k views
  10. National Institute of Infectious Diseases has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 11 Japan/IC-0793/2021 2/11 Japan

    • 1 reply
    • 222 views
  11. UW Virology Lab has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 28 USA/NY-UW-NW66056951/2021 1/28 New York

    • 1 reply
    • 188 views
  12. CDC has released (at GISAID) four UK variant (B.1.1.7) sequences collected Jan 4-21 from New York USA/NY-CDC-9NH8-9097/2021 1/20 41 New York USA/NY-CDC-9NRS-9173/2021 1/4 32 New York USA/NY-CDC-9NHD-9098/2021 1/20 43 New York USA/NY-CDC-STM-000003059/2021 1/16 43M New York

    • 4 replies
    • 315 views
  13. NYCPHL has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 29 from New York USA/NY-NYCPHL-002970/2021 1/29 57M New York New York

    • 1 reply
    • 173 views
  14. NYCPHL has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 27 from Jamaica USA/NY-NYCPHL-002864/2021 1/27 30M Jamaica New York

    • 1 reply
    • 188 views
  15. NYCPHL has released (at GISAID) two UK variant (B.1.1.7) sequence collected Jan 27 from Corona USA/NY-NYCPHL-002873/2021 1/27 64F Corona New York

    • 1 reply
    • 190 views
  16. NYCPHL has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 19 from Harlem USA/NY-NYCPHL-002554/2021 1/19 19F Harlem New York

    • 1 reply
    • 203 views
  17. NYCPHL has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 15 from New York USA/NY-NYCPHL-002581/2021 1/15 30F New York New York

    • 1 reply
    • 207 views
  18. Grubaugh Lab has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 6 from Flushing USA/NY-Yale-S224/2021 1/6 Flushing New York

    • 1 reply
    • 175 views
  19. The 501.v2 sequence described below has not been released. The UNK number will be updated upon release. USA/NY-Wadsworth-UNK993/2021 Nassau County New York USA/NY-PRL-20210210_01G08/2021 New York The South African coronavirus variant has been identified in a New York state resident for the first time, Gov. Andrew Cuomo announced Sunday. The variant was identified in a Nassau County resident, Cuomo said. Sequencing of the mutant strain was done by a New York City–based commercial lab and verified at the Wadsworth Center in Albany. https://www.radio.com/1010wins/news/state/south-african-coronavirus-variant-found-in-ny-resident

    • 1 reply
    • 262 views
  20. New York University School of Medicine has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 15-Feb 1 from Nassau County USA/NY-NYULH72/2021 2/1 35F Nassau County New York USA/NY-NYULH71/2021 1/15 82F Nassau County New York

    • 2 replies
    • 219 views
  21. New York University School of Medicine has released (at GISAID) two UK variant (B.1.1.7) sequences collected Feb 2 from Suffolk County USA/NY-NYULH74/2021 2/2 45M Suffolk County New York USA/NY-NYULH73/2021 2/2 30F Suffolk County New York

    • 2 replies
    • 227 views
  22. New York University School of Medicine has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 30-Feb 9 from Manhattan USA/NY-NYULH78/2021 1/30 66M Manhattan New York USA/NY-NYULH76/2021 2/9 57F Manhattan New York

    • 2 replies
    • 198 views
  23. New York University School of Medicine has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 7-9 from Brooklyn USA/NY-NYULH80/2021 2/8 66F Brooklyn New York USA/NY-NYULH77/2021 2/7 81M Brooklyn New York USA/NY-NYULH75/2021 2/9 36F Brooklyn New York

    • 3 replies
    • 246 views
  24. Wadsworth has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 31-Feb 3 from Queens USA/NY-Wadsworth-21018160-01/2021 1/26 82M Bronx New York USA/NY-Wadsworth-21018128-01/2021 2/2 70F Bronx New York USA/NY-Wadsworth-21018127-01/2021 2/1 82F Bronx New York

    • 3 replies
    • 286 views
  25. Wadsworth has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 31-Feb 3 from Queens USA/NY-Wadsworth-21019365-01/2021 2/3 29M Queens New York USA/NY-Wadsworth-21018153-01/2021 1/31 60M Queens New York

    • 2 replies
    • 240 views

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