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Pandemic Potentials Blog

Sequences (COVID)

  1. UK Variant B.1.1.7 SARS CoV2 Sequence From Ulster County New York

    Started by niman,

    Wadsworth has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 22 from Ulster County USA/NY-Wadsworth-21013533-01/2021 1/22 39M Ulster County New York

    • 1 reply
    • 235 views
    niman

  2. UK Variant B.1.1.7 SARS CoV2 Sequence From Nassau County New York

    Started by niman,

    Wadsworth has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 23 from Nassau County USA/NY-Wadsworth-21013973-01/2021 1/23 47M Nassau County New York

    • 1 reply
    • 216 views
    niman

  3. UK Variant B.1.1.7 SARS CoV2 Sequence From Broome County New York

    Started by niman,

    Wadsworth has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 1 from Broome County USA/NY-Wadsworth-21017860-01/2021 2/1 23M Broome County New York

    • 1 reply
    • 226 views
    niman

  4. UK Variant B.1.1.7 SARS CoV2 Sequence From Richmond County New York

    Started by niman,

    Wadsworth has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 6 from Richmond County USA/NY-Wadsworth-21019369-01/2021 2/6 53F Richmond County New York

    • 1 reply
    • 206 views
    niman

  5. Four UK Variant B.1.1.7 SARS CoV2 Sequences From Rockland County New York

    Started by niman,

    Wadsworth has released (at GISAID) 4 UK variant (B.1.1.7) sequences collected Jan 27-Feb 4 from Rockland County USA/NY-Wadsworth-21015759-01/2021 1/27 26F Rockland County New York USA/NY-Wadsworth-21019367-01/2021 1/31 59M Rockland County New York USA/NY-Wadsworth-21019363-01/2021 2/3 40F Rockland County New York USA/NY-Wadsworth-21019362-01/2021 2/4 48F Rockland County New York

    • 4 replies
    • 282 views
    niman

  6. Three UK Variant B.1.1.7 SARS CoV2 Sequences From New York County New York

    Started by niman,

    Wadsworth has released (at GISAID) 3 UK variant (B.1.1.7) sequences collected Jan 1-20 from New York County USA/NY-Wadsworth-21010216-01/2021 1/6 67M New York County New York USA/NY-Wadsworth-21015617-01/2021 1/20 65F New York County New York USA/NY-Wadsworth-21010216-01/2021 1/6 67M New York County New York

    • 3 replies
    • 279 views
    niman

  7. UK Variant B.1.1.7 SARS CoV2 Sequence From Bronx New York

    Started by niman,

    NYCPHL has released (at GISAID) a UK variant (B.1.1.7) sequences collected Feb 2 from Bronx USA/NY-NYCPHL-003041/2021 2/2 61M Bronx New York

    • 1 reply
    • 192 views
    niman

  8. UK Variant B.1.1.7 SARS CoV2 Sequence From Morrisania New York

    Started by niman,

    NYCPHL has released (at GISAID) a UK variant (B.1.1.7) sequences collected Feb 8 from Morrisania USA/NY-NYCPHL-003122/2021 2/8 63F Morrisania New York

    • 1 reply
    • 221 views
    niman

  9. UK Variant B.1.1.7 SARS CoV2 Sequence From Crown Heights New York

    Started by niman,

    NYCPHL has released (at GISAID) a UK variant (B.1.1.7) sequences collected Feb 8 from Crown Heights USA/NY-NYCPHL-003162/2021 2/8 31F Crown Heights

    • 1 reply
    • 200 views
    niman

  10. 128 UK Variant B.1.1.7 SARS CoV2 Sequences From Florida

    Started by niman,

    CDC has released (at GISAID) 128 UK variant (B.1.1.7) sequences collected Jan 8-29 USA/FL-CDC-STM-000008194/2021 1/8 44F Florida USA/FL-CDC-STM-000008249/2021 1/9 60M Florida USA/FL-CDC-STM-000007280/2021 1/29 23M Florida USA/FL-CDC-STM-000007231/2021 1/29 24M Florida USA/FL-CDC-STM-000008232/2021 1/9 29F Florida USA/FL-CDC-STM-000008263/2021 1/9 31M Florida USA/FL-CDC-STM-000008229/2021 1/9 57M Florida USA/FL-CDC-STM-000008139/2021 1/10 33M Florida USA/FL-CDC-STM-000008154/2021 1/7 74M Florida USA/FL-CDC-STM-000008138/2021 1/10 75F Florida USA/FL-CDC-STM-000008072/2021 1/7 43M Florida USA/FL-CDC-STM-000008006/2021 1/7 32M Florida USA/FL-CD…

    • 11 replies
    • 490 views
    niman

  11. Five UK Variant B.1.1.7 SARS CoV2 Sequences From Texas

    Started by niman,

    CDC has released (at GISAID) 5 UK variant (B.1.1.7) sequences collected Jan 8-29 USA/TX-CDC-STM-000007237/2021 1/29 47M Texas USA/TX-CDC-STM-000008031/2021 1/8 58F Texas USA/TX-CDC-STM-000007206/2021 1/30 34M Texas USA/TX-CDC-STM-000005934/2021 1/28 22F Texas USA/TX-CDC-STM-000005042/2021 1/22 15M Texas

    • 5 replies
    • 336 views
    niman

  12. 501.v2 SARS CoV2 Variant B.1.351 Sequence From Maryland

    Started by niman,

    Maryland Public Health Laboratory has released (at GISAID) a B.1.351 (501.V2) SARS CoV sequence collected Feb 10 USA/MD-MDH-0945/2021 2/10 Maryland

    • 1 reply
    • 206 views
    niman

  13. 43 UK Variant B.1.1.7 SARS CoV2 Sequences From California

    Started by niman,

    CDC has released (at GISAID) 43 UK variant (B.1.1.7) sequences collected Jan 8-29 USA/CA-CDC-STM-000008272/2021 1/10 45M USA/CA-CDC-STM-000008207/2021 1/11 50F USA/CA-CDC-STM-000008253/2021 1/10 17M USA/CA-CDC-STM-000008209/2021 1/11 52M USA/CA-CDC-STM-000008146/2021 1/8 56F USA/CA-CDC-STM-000008130/2021 1/11 32M USA/CA-CDC-STM-000008005/2021 1/8 28F USA/CA-CDC-STM-000008060/2021 1/8 30M USA/CA-CDC-STM-000008067/2021 1/8 27F USA/CA-CDC-STM-000008171/2021 1/8 33M USA/CA-CDC-STM-000004217/2021 1/21 35F USA/CA-CDC-STM-000004291/2021 1/22 33M USA/CA-CDC-STM-000005392/2021 1/26 66M USA/CA-CDC-STM-000005376/2021 1/26 22M USA/CA-CDC-STM-00…

    • 0 replies
    • 224 views
    niman

  14. 501.v2 SARS CoV2 Variant B.1.351 Sequence From South Carolina

    Started by niman,

    US Air Force School of Aerospace Medicine has released (at GISAID) a B.1.351 (501.V2) SARS CoV sequence collected Jan 27 USA/SC-USAFSAM-S0287/2021 1/12 24M South Carolina

    • 1 reply
    • 252 views
    niman

  15. UK Variant B.1.1.7 SARS CoV2 Sequence From Los Angeles County California

    Started by niman,

    Los Angeles County PHL has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 18-26 USA/CA-LACPHL-AF00368/2021 1/26 Los Angeles County USA/CA-LACPHL-AF00342/2021 1/18 Los Angeles County

    • 2 replies
    • 287 views
    niman

  16. UK Variant B.1.1.7 SARS CoV2 Sequence From California

    Started by niman,

    Broad Institute of Harvard and MIT has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 20 USA/CA-Broad_FlowHealth-00063/2021 1/20 California

    • 1 reply
    • 240 views
    niman

  17. 12 UK Variant B.1.1.7 SARS CoV2 Sequences From California

    Started by niman,

    Fulgent Genetics has released (at GISAID) 12 UK variant (B.1.1.7) sequences collected Jan 21-Feb 2 USA/CA-RD-RA01736/2021 1/28 33F California USA/CA-RD-RA02435/2021 1/30 27F California USA/CA-RD-RA03287/2021 1/29 21F California USA/CA-RD-RA2154/2021 1/28 38M California USA/CA-RD-RA02984/2021 1/31 33F California USA/CA-RD-RA03665/2021 2/2 >89M California USA/CA-RD-RA03480/2021 1/30 45F California USA/CA-RD-RA02435/2021 1/30 27F California USA/CA-RD-RA01736/2021 1/28 33F California USA/CA-RD-RA03287/2021 1/29 21F California USA/CA-RD-RA2154/2021 1/28 38M California USA/CA-RD-RA02984/2021 1/21 33F California

    • 12 replies
    • 416 views
    niman

  18. UK Variant B.1.1.7 SARS CoV2 Sequence From Davis California

    Started by niman,

    UC Davis Genome Center has released (at GISAID) two UK variant (B.1.1.7) sequences collected Jan 27-28 in Davis USA/1042583/2021 1/28 Davis California USA/1359221/2021 1/27 Davis California

    • 2 replies
    • 251 views
    niman

  19. UK Variant B.1.1.7 SARS CoV2 Sequence From Utrecht Netherlands With E484K

    Started by niman,

    RIVM has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 3 in Utrecht Netherlands/UT-RIVM-12844/2021 2/3 Utrecht Netherlands

    • 1 reply
    • 209 views
    niman

  20. Ten 501.v2 SARS CoV2 Variant B.1.351 Sequences From South Carolina

    Started by niman,

    The B.1.351 sequences cited below have not been released. They will be assigned UNK numbers which will be updated upon release. USA/SC-MML-UNK893/2021 South Carolina USA/SC-MML-UNK894/2021 South Carolina USA/SC-MML-UNK895/2021 South Carolina USA/SC-MML-UNK896/2021 South Carolina USA/SC-MML-UNK897/2021 South Carolina USA/SC-MML-UNK898/2021 South Carolina USA/SC-MML-UNK899/2021 South Carolina USA/SC-MML-UNK900/2021 South Carolina USA/SC-MML-UNK901/2021 South Carolina USA/SC-MML-UNK902/2021 South Carolina MAKO Medical Laboratories has been helping states across the country sequence samples to identify variant cases. The lab helped South Carolina …

    • 11 replies
    • 438 views
    niman

  21. 8 UK Variant B.1.1.7 SARS CoV2 Sequences From Maryland

    Started by niman,

    Johns Hopkins has released (at GISAID) 8 UK variant (B.1.1.7) sequences collected Jan 25 - Feb 5 USA/MD-HP02227/2021 2/5 4M Maryland USA/MD-HP02224/2021 2/5 32M Maryland USA/MD-HP02041/2021 1/28 36M Maryland USA/MD-HP02064/2021 1/25 70M Maryland USA/MD-HP02223/2021 2/4 22F Maryland USA/MD-HP02221/2021 2/4 28F Maryland USA/MD-HP02242/2021 2/6 57F Maryland USA/MD-HP02047/2021 1/28 64M Maryland

    • 6 replies
    • 320 views
    niman

  22. UK Variant B.1.1.7 SARS CoV2 Sequence From Maryland Sans Y144del

    Started by niman,

    MD PHL has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 4 USA/MD-MDH-0847/2021 2/4 Maryland

    • 1 reply
    • 220 views
    niman

  23. 19 UK Variant B.1.1.7 SARS CoV2 Sequences From Maryland

    Started by niman,

    MD PHL has released (at GISAID) 19 UK variant (B.1.1.7) sequences collected Jan 19 - Feb 9 USA/MD-MDH-0897/2021 2/3 USA/MD-MDH-0892/2021 2/5 USA/MD-MDH-0891/2021 2/5 USA/MD-MDH-0890/2021 2/5 USA/MD-MDH-0896/2021 2/6 USA/MD-MDH-0894/2021 2/6 USA/MD-MDH-0898/2021 2/9 USA/MD-MDH-0846/2021 2/4 USA/MD-MDH-0848/2021 1/20 USA/MD-MDH-0839/2021 1/28 USA/MD-MDH-0845/2021 2/4 USA/MD-MDH-0838/2021 2/1 USA/MD-MDH-0844/2021 2/4 USA/MD-MDH-0829/2021 1/19 USA/MD-MDH-0815/2021 1/21 USA/MD-MDH-0814/2021 1/21 USA/MD-MDH-0817/2021 1/28 USA/MD-MDH-0794/2021 1/28 USA/MD-MDH-0792/2021 1/27

    • 19 replies
    • 596 views
    niman

  24. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Indiana

    Started by niman,

    Helix B.1.1.7 sequences from Indiana in progress https://www.helix.com/pages/helix-covid-19-surveillance-dashboard USA/IN-CDC-STM-000003503/2021 11-20M Indiana USA/IN-CDC-STM-000004224/2021 41-50M Indiana

    • 2 replies
    • 201 views
    niman

  25. UK Variant B.1.1.7 SARS CoV2 Sequence From Indiana

    Started by niman,

    CDC has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 28 USA/IN-CDC-STM-000005909/2021 1/28 16F Indiana

    • 1 reply
    • 272 views
    niman

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