Sequences (COVID)

Public Health Ontario Laboratory has released (at GISAID) 14 UK variant (B.1.1.7) sequence collected in Jan which were lacking Y144del in S gene Canada/ON-PHL-21-00639/2021 1 40-44F Ontario Canada Canada/ON-PHL-21-00638/2021 1 M Ontario Canada Canada/ON-PHL-21-00637/2021 1 40-44M Ontario Canada Canada/ON-PHL-21-00634/2021 1 M Ontario Canada Canada/ON-PHL-21-00551/2021 1 40-44F Ontario Canada Canada/ON-PHL-21-00556/2021 1 M Ontario Canada Canada/ON-PHL-21-00557/2021 1 90-94M Ontario Canada Canada/ON-PHL-21-00560/2021 1 85-89M Ontario Canada Canada/ON-PHL-21-00558/2021 1 F Ontario Canada Canada/ON-PHL-21-00812/2021 1 25-29F Ontario Canada Canada/ON…

CDC has released (at GISAID) four B.1.1.7 SARS CoV2 sequences collected in Georgia Jan 11-14. USA/GA-CDC-STM-0000013-G05/2021 1/14 Georgia USA/GA-CDC-STM-0000013-C02/2021 1/14 Georgia USA/GA-CDC-STM-0000013-H09/2021 1/11 Georgia USA/GA-CDC-STM-0000013-C12/2021 1/11 Georgia

Variant sequences have not been released. The will be assigned UNK numbers and updated when released Canada/AB-PHL-UNK600/2021 Alberta Canada Canada/AB-PHL-UNK601/2021 Alberta Canada Canada/AB-PHL-UNK602/2021 Alberta Canada Canada/AB-PHL-UNK603/2021 Alberta Canada Canada/AB-PHL-UNK604/2021 Alberta Canada Canada/AB-PHL-UNK605/2021 Alberta Canada Canada/AB-PHL-UNK606/2021 Alberta Canada Canada/AB-PHL-UNK607/2021 Alberta Canada Canada/AB-PHL-UNK608/2021 Alberta Canada Canada/AB-PHL-UNK609/2021 Alberta Canada Canada/AB-PHL-UNK610/2021 Alberta Canada Canada/AB-PHL-UNK611/2021 Alberta Canada Canada/AB-PHL-UNK612/2021 Alberta Canada Ca…

COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 31 from Glasgow England/QEUH-11CA824/2021 1/31 Glasgow Scotland

COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 29 from Milton Keynes England/MILK-11A5090/2021 1/29 Milton Keynes England

COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 26 from Milton Keynes England/MILK-118D966/2021 1/26 Milton Keynes England

COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 26 from Milton Keynes England/MILK-118DB9D/2021 1/26 Milton Keynes England

Lauring Lab has released (at GISAID) 15 UK variant (B.1.1.7) sequences collected Jan 15-Feb 2 USA/MI-UM-10038131441/2021 2/2 Michigan USA/MI-UM-10038104874/2021 2/1 Michigan USA/MI-UM-10038104868/2021 2/1 Michigan USA/MI-UM-S488413/2021 1/29 Michigan USA/MI-UM-10038088218/2021 1/30 Michigan USA/MI-UM-10038093840/2021 1/31 Michigan USA/MI-UM-10038050117/2021 1/28 Michigan USA/MI-UM-S486980/2021 1/22 Michigan USA/MI-UM-S502347/2021 1/26 Michigan USA/MI-UM-S491259/2021 1/25 Michigan USA/MI-UM-S490887/2021 1/25 Michigan USA/MI-UM-S510232/2021 1/27 Michigan USA/MI-UM-S494218/2021 1/26 Michigan USA/MI-UM-S466921/2021 1/18 Michigan USA/MI-UM-100…

Lin-Kou Chang Gung Memorial Hospital has released (at GISAID) a UK variant (B.1.1.7) sequence collected Dec 26 in Taoyuan Taiwan/CGMH-CGU-44/2020 12/26 M Taoyuan Taiwan

Instituto Nacional de Salud has released (at GISAID) three P.1 (Brazil) variant sequences collected on Jan 4-23 in Amazonas Colombia/AMA-INS-VG-633/2021 1/12 75M Amazonas Colombia Colombia/AMA-INS-VG-631/2021 1/23 58M Amazonas Colombia Colombia/AMA-INS-VG-367/2021 1/4 20M Amazonas Colombia

Instituto Nacional de Salud has released (at GISAID) four P.1 (Brazil) variant sequences collected on Jan 20-22 in Amazonas Colombia/AMA-INS-VG-639/2021 1/21 51M Amazonas Colombia Colombia/AMA-INS-VG-637/2021 1/20 63F Amazonas Colombia Colombia/AMA-INS-VG-636/2021 1/22 38F Amazonas Colombia Colombia/AMA-INS-VG-635/2021 1/22 48M Amazonas Colombia

CDC released 43 UK variant B.1.1.7 sequences (at GISAID) from 9 states, including the 22 below from Texas, which were collected Jan 20-25. Although collection dates were included, the sample location was limited to the collection state USA/TX-CDC-9N2I-8991/2021 1/20 32 USA/TX-CDC-9N2D-8990/2021 1/20 14 USA/TX-CDC-9N1Y-8987/2021 1/20 30 USA/TX-CDC-9N2S-8993/2021 1/22 28 USA/TX-CDC-9N3H-8998/2021 1/23 28 USA/TX-CDC-9N3W-9001/2021 1/25 22 USA/TX-CDC-9N1E-8983/2021 1/20 7 USA/TX-CDC-9N1O-8985/2021 1/21 17 USA/TX-CDC-9N41-9002/2021 1/25 76 USA/TX-CDC-9N23-8988/2021 1/21 51 USA/TX-CDC-9N37-8996/2021 1/23 32 USA/TX-CDC-9N3R-9000/2021 1/25 6 USA/TX-C…

The sequence described below has not been released. It will be assigned a UNK number, which will be updated upon release. USA/VA-UNK599/2021Virginia The Virginia Department of Health said the SARS-CoV-2 variant B.1.351 was identified in a sample from an adult who is a resident in Eastern Virginia. The health department is currently looking into the person’s case and travel history.

Maryland Public Health Laboratory has released (at GISAID) three B.1.351 (501.V2) SARS CoV sequences collected Jan 29-Feb 1 USA/MD-MDH-0833/2021 2/1 USA/MD-MDH-0830/2021 1/30 USA/MD-MDH-0831/2021 1/29

Sequences for the cases below have not been released. However, there have been over 150 cases which have been sequenced or have been positive for N501Y (which is consistent with B.1.1.7). Another 30 have been assigned UNK numbers which will be updated when sequences are released. Canada/ON-PHL-UNK569/2021 Barrie Ontario Canada Canada/ON-PHL-UNK570/2021 Barrie Ontario Canada Canada/ON-PHL-UNK571/2021 Barrie Ontario Canada Canada/ON-PHL-UNK572/2021 Barrie Ontario Canada Canada/ON-PHL-UNK573/2021 Barrie Ontario Canada Canada/ON-PHL-UNK574/2021 Barrie Ontario Canada Canada/ON-PHL-UNK575/2021 Barrie Ontario Canada Canada/ON-PHL-UNK576/2021 Barrie Ontar…

The sequences below have not been released. The UNK numbers will be updated upon release Canada/AB-PHL-UNK507/2021 Alberta Canada Canada/AB-PHL-UNK508/2021 Alberta Canada Canada/AB-PHL-UNK509/2021 Alberta Canada Canada/AB-PHL-UNK510/2021 Alberta Canada Canada/AB-PHL-UNK511/2021 Alberta Canada Canada/AB-PHL-UNK512/2021 Alberta Canada Canada/AB-PHL-UNK513/2021 Alberta Canada Canada/AB-PHL-UNK514/2021 Alberta Canada Canada/AB-PHL-UNK515/2021 Alberta Canada Canada/AB-PHL-UNK516/2021 Alberta Canada Canada/AB-PHL-UNK517/2021 Alberta Canada Canada/AB-PHL-UNK518/2021 Alberta Canada Canada/AB-PHL-UNK519/2021 Alberta Canada Canada/AB-PHL-UNK520/2021 …

Sequences for Alberta variants have not been released. Assigned UNK numbers will be updated upon release. Canada/AB-PHL-UNK501/2021 Alberta Canada Canada/AB-PHL-UNK502/2021 Alberta Canada Canada/AB-PHL-UNK503/2021 Alberta Canada Canada/AB-PHL-UNK504/2021 Alberta Canada Canada/AB-PHL-UNK505/2021 Alberta Canada Canada/AB-PHL-UNK506/2021 Alberta Canada As of February 5, Alberta has detected: 71 cases of the variant first identified in the United Kingdom (B.1.1.7) 7 cases of the variant first identified in South Africa (B.1.351) https://www.alberta.ca/covid-19-alberta-data.aspx#jumplinks-1

Sequences for the cases described below have not been released. they will be assigned UNK numbers which will be updated when released. Canada/AB-PHL-UNK499/2021 Calgary Alberta Canada Canada/AB-PHL-UNK500/2021 Calgary Alberta Canada Staff and students who were potentially exposed to a variant case of COVID-19 at two Calgary schools have been placed in quarantine after two children were determined to be infectious. According to Dr. Deena Hinshaw, Alberta's chief medical officer of health, both infected students are the children of returning travellers. The age of the children, the name of the schools, the variant they were infected with and the date …

Sequences have not been released for the three cases described below. They will be assigned UNK numbers which will be upgraded upon release. Canada/AB-PHL-UNK496/2021 Calgary Alberta Canada Canada/AB-PHL-UNK497/2021 Calgary Alberta Canada Canada/AB-PHL-UNK498/2021 Calgary Alberta Canada With rising concerns around highly contagious COVID variants — including three confirmed cases in two Calgary schools — parents are demanding improved safety protocols to keep students and staff safer in classrooms. But even as cases of new variants in Alberta jumped from 51 to 57 over the past day, health officials insist the highly contagious mutations, which have now…

Sequences for the cases described below have not been released. The assigned UNK numbers will be updated upon release Canada/AB-PHL-UNK494/2021 St Albert Alberta Canada Canada/AB-PHL-UNK495/2021 St Albert Alberta Canada Four cases of a COVID-19 variant have been linked to an outbreak at an Alberta daycare, as the tally of variant cases in the province climbs to 57, Alberta’s top doctor said Tuesday. Alberta Health first learned of the common thread between the four cases Tuesday. In the short time health officials have investigated the cases, they haven’t found a connection to travel. https://calgaryherald.com/news/local-news/live-at-330-p-m-…

Sequences described below have not been released. The assigned UNK numbers will be updated upon release. Canada/AB-PHL-UNK492/2021 St Albert Alberta Canada Canada/AB-PHL-UNK493/2021 St Albert Alberta Canada “All of the individuals associated with the daycare have now been contacted,” Hinshaw said. “At the moment I do not have any information about whether or not there is any additional variant spread that’s been identified at that location but additional testing is underway.” Thursday evening, the owners of Tot Spot Academy in St. Albert confirmed their daycare is the one involved in the outbreak. Alicia Bishop said the daycare’s very first cas…

Sequences for the 40 new UK variant (B.1.1.7) cases listed below have not been released. They will be assigned UNK numbers, which will be updated upon release. USA/FL-CDC-STM-000004117/2021 1/19 Florida USA/FL-CDC-STM-000004132/2021 1/20 Florida USA/FL-CDC-STM-000004134/2021 1/19 Florida USA/FL-CDC-STM-000004157/2021 1/19 Florida USA/FL-CDC-STM-000003644/2021 1/18 Florida USA/FL-CDC-STM-000003606/2021 1/18 Florida USA/FL-CDC-STM-000004140/2021 1/19 Florida USA/FL-CDC-STM-000001626/2021 1/11 Florida USA/FL-CDC-STM-000002435/2021 1/13 Florida USA/FL-CDC-STM-000002476/2021 1/13 Florida USA/FL-CDC-STM-000002443/2021 1/13 Florida USA/FL-CDC-STM-0000…

Instituto Adolfo Lutz has released (at GISAID) two P.1 (Brazil) variant sequences collected on Jan 19-20 in Manaus Brazil/AM-1188/2021 1/20 50M Manaus Brazil Brazil/AM-1192/2021 1/19 57M Manaus Brazil

Instituto Adolfo Lutz has released (at GISAID) six P.1 (Brazil) variant sequences collected on Jan 25 in Roraima. Brazil/RR-1081/2021 1/25 29M Roraima Brazil Brazil/RR-1083/2021 1/25 38M Roraima Brazil Brazil/RR-1084/2021 1/25 25M Roraima Brazil Brazil/RR-1085/2021 1/25 52M Roraima Brazil Brazil/RR-1087/2021 1/25 25M Roraima Brazil Brazil/RR-1089/2021 1/25 25M Roraima Brazil

Evandro Chagas Institute has released (at GISAID) 13 P.1 (Brazil) variant sequences collected Dec 21-Jan 7 in Amazonas. Brazil/AM-IEC-177328/2020 12/30 41M Amazonas Brazil Brazil/AM-IEC-177323/2021 1/7 36M Amazonas Brazil Brazil/AM-IEC-177322/2021 1/6 30M Amazonas Brazil Brazil/AM-IEC-177320/2021 1/5 35F Amazonas Brazil Brazil/AM-IEC-177314/2021 1/5 39M Amazonas Brazil Brazil/AM-IEC-177312/2020 12/30 52F Amazonas Brazil Brazil/AM-IEC-177310/2020 12/30 40F Amazonas Brazil Brazil/AM-IEC-177301/2020 12/21 77M Amazonas Brazil Brazil/AM-IEC-177294/2020 12/28 41F Amazonas Brazil Brazil/AM-IEC-177293/2020 12/29 41M Amazonas Brazil Brazil/AM-IEC-177292/20…