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Pandemic Potentials Blog

Sequences (COVID)

  1. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Glasgow Scotland With E484K

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected Feb 21-24 in Glasgow England/QEUH-12FCEAE/2021 2/21 Glasgow England/QEUH-13293E4/2021 2/24 Glasgow

    • 2 replies
    • 426 views
    niman

  2. Two UK Variant B.1.1.7 SARS CoV2 Sequences From New York New York With E484K

    Started by niman,

    Pandemic Response Lab has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 26 - Mar 2. USA/NY-PRL-2021_03_05_00K17/2021 3/2 14F New York New York USA/NY-PRL-2021_03_01_00J22/2021 2/26 57F New York New York

    • 2 replies
    • 421 views
    niman

  3. UK Variant B.1.1.7 SARS CoV2 Sequence From New York New York With E484K

    Started by niman,

    Pandemic Response Lab has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 26. USA/NY-PRL-2021_03_01_00E03/2021 2/26 39M New York New York

    • 1 reply
    • 455 views
    niman

  4. Three 501.v2 SARS CoV2 Variant B.1.351 Sequences From Maryland

    Started by niman,

    Maryland Public Health Laboratory has released (at GISAID) three B.1.351 sequences collected Feb 9-20 USA/MD-MDH-1080/2021 2/19 Maryland USA/MD-MDH-1082/2021 2/20 Maryland USA/MD-MDH-1151/2021 2/9 Maryland

    • 3 replies
    • 447 views
    niman

  5. P.1 Variant SARS CoV2 Sequence From Douglas County Oregon ex-Brazil

    Started by niman,

    The P.1 variant described below has not been released. The assigned UNK number will be updated upon release. USA/OR-CDC-2-3846542/2021 USA/OR-OHSU-UNK1004/2021 Douglas County Oregon Dr. Bob Dannenhoffer, our Douglas County Public Health Officer, has confirmed the first positive case related to the COVID-19 P.1 variant in Douglas County. This cases marks the first case of the P.1 variant in Oregon, as well as the first case on the west coast of the United States. There have only been 10 other cases of the P.1 variant reported in the United States, in Minnesota (2), Florida (5), Oklahoma (1), Alaska (1) and Maryland (1). The P.1 variant confirmed last night f…

    • 1 reply
    • 436 views
    niman

  6. UK Variant B.1.1.7 SARS CoV2 Sequence From Sublimity Oregon

    Started by niman,

    Kashi Clinical Laboratory has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 25 USA/OR-KCL-21012586COV_06/2021 1/25 85M Sublimity

    • 1 reply
    • 325 views
    niman

  7. UK Variant B.1.1.7 SARS CoV2 Sequence From Portland Oregon Sans Y144del

    Started by niman,

    Oregon SARS-CoV-2 Genome Sequencing Center has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 6 USA/OR-OHSU-PHL00034/2021 2/6 79M

    • 4 replies
    • 511 views
    niman

  8. UK Variant B.1.1.7 SARS CoV2 Sequence From Portland Oregon

    Started by niman,

    Oregon SARS-CoV-2 Genome Sequencing Center has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 6 USA/OR-OHSU-PHL00035/2021 2/6 82F

    • 4 replies
    • 593 views
    niman

  9. UK Variant B.1.1.7 SARS CoV2 Sequence From Portland Oregon With E484K

    Started by niman,

    Oregon SARS-CoV-2 Genome Sequencing Center has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 6 USA/OR-OHSU-PHL00037/2021 2/6 77M

    • 6 replies
    • 679 views
    niman

  10. UK Variant B.1.1.7 SARS CoV2 Sequence From New York New York With E484K

    Started by niman,

    PRI has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 8 USA/NY-PRL-2021_0210_04E07/2021 2/8 M New York City

    • 1 reply
    • 393 views
    niman

  11. Two UK Variant B.1.1.7 SARS CoV2 Sequences From Alderley Park England With E484K

    Started by niman,

    COG-UK has released (at GISAID) two UK variant (B.1.1.7) sequences collected Feb 19-20 in Alderley Park England/ALDP-1306B12/2021 2/20 Alderley Park England/ALDP-130C37E/2021 2/19 Alderley Park

    • 2 replies
    • 407 views
    niman

  12. UK Variant B.1.1.7 SARS CoV2 Sequence From Marseille France With E484K

    Started by niman,

    MEPHI has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 16 France/PAC-IHU-3345-1/2021 2/16 Marseille France

    • 1 reply
    • 400 views
    niman

  13. UK Variant B.1.1.7 SARS CoV2 Sequence From Utrecht Netherlands With E484K

    Started by niman,

    RIVM has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 4 Netherlands/UT-RIVM-13864/2021 2/4 Utrecht Netherlands

    • 1 reply
    • 376 views
    niman

  14. UK Variant B.1.1.7 SARS CoV2 Sequence From Milton Keynes England With E484G

    Started by niman,

    COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 15 England/MILK-12BCB94/2021 2/15 Milton Keynes England

    • 1 reply
    • 414 views
    niman

  15. Four P.1 Variant SARS CoV2 Sequences From Houston Texas

    Started by niman,

    Houston Methodist Hospital has released (at GISAID) four P.1 sequences collected Jan 17-20 USA/TX-HMH-MCoV-25288/2021 1/20 Houston USA/TX-HMH-MCoV-24664/2021 1/19 Houston USA/TX-HMH-MCoV-24624/2021 1/19 Houston USA/TX-HMH-MCoV-24400/2021 1/17 Houston

    • 4 replies
    • 496 views
    niman

  16. P.1 Variant SARS CoV2 Sequence From Florida

    Started by niman,

    CDC has released (at GISAID) a P.1 sequence collected Jan 26 USA/FL-CDC-LC0010765/2021 1/26 Florida

    • 1 reply
    • 361 views
    niman

  17. 501.v2 SARS CoV2 Variant B.1.351 Sequence From Illinois

    Started by niman,

    CDC has released (at GISAID) a B.1.351 sequence collected Jan 21 USA/IL-CDC-LC0009088/2021 1/21 Illinois

    • 1 reply
    • 392 views
    niman

  18. 501.v2 SARS-CoV2 B.1.351 Variant Sequence From Maryland

    Started by niman,

    Maryland Public Health Laboratory has released (at GISAID) a B.1.351 sequence collected Feb 12 USA/MD-MDH-1049/2021 2/12 Maryland

    • 1 reply
    • 319 views
    niman

  19. Two 501.v2 SARS CoV2 Variant B.1.351 Sequences From Houston Texas

    Started by niman,

    Houston Methodist Hospital has released (at GISAID) two B.1.351 sequences collected Jan 1-3 in Houston USA/TX-HMH-MCoV-21064/2021 1/1 Houston USA/TX-HMH-MCoV-19966/2021 1/3 Houston

    • 2 replies
    • 391 views
    niman

  20. UK Variant B.1.1.7 SARS CoV2 Sequence From Glasgow Scotland With E484K

    Started by niman,

    COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 16 England/QEUH-12B7689/2021 2/16 Glasgow Scotland

    • 1 reply
    • 338 views
    niman

  21. UK Variant B.1.1.7 SARS CoV2 Sequence From Milton Keynes England With E484A

    Started by niman,

    COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Feb 12 England/MILK-129C523/2021 2/12 Milton Keynes England

    • 1 reply
    • 329 views
    niman

  22. 501.v2 SARS CoV2 Variant B.1.351 Sequence From Washington

    Started by niman,

    UW Virology Lab released (at GISAID) a B.1.351 variant sequence collected Jan 29 USA/WA-UW-60605/2021 1/29 Washington

    • 1 reply
    • 337 views
    niman

  23. Two 501.v2 SARS CoV2 Variant B.1.351 Sequences From Massachusetts

    Started by niman,

    Broad Institute of Harvard and MIT released (at GISAID) two B.1.351 sequences collected Jan 29-30 USA/MA-Broad_CRSP-00997/2021 1/29 Massachusetts USA/MA-Broad_CRSP-01046/2021 1/30 Massachusetts

    • 2 replies
    • 344 views
    niman

  24. UK Variant B.1.1.7 SARS CoV2 Sequence From Cambridge England With E484K

    Started by niman,

    COG-UK has released (at GISAID) a UK variant (B.1.1.7) sequence collected Jan 30 England/CAMC-11D4256/2021 1/30 Cambridge England

    • 1 reply
    • 342 views
    niman

  25. P.1 Variant SARS CoV2 Sequence From Anchorage Alaska

    Started by niman,

    Alaska State Virology Laboratory has released (at GISAID) a P.1 variant sequence collected Feb 8 in Anchorage USA/AK-PHL6891/2021 2/8 Anchorage-Mat Su

    • 1 reply
    • 211 views
    niman

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