Sequences (COVID)

The 501.v2 SARS CoV2 COVID Variant sequence from Alberta Canada has not been released. The assigned UNK number will be updated when available. Canada/AB-PHL-20-UNK60/2020

COG-UK has released (at GISAID) a 501.v2 SARS CoV2 sequence, England/ALDP-CE20EA/2020, from Alderley Park, England collected Dec 18.

COG-UK has released (at GISAID) a 501.v2 SARS CoV2 sequence, England/MILK-DAFDD2/2020, from Milton Keynes, England collected Dec 29.

COG-UK has released (at GISAID) 2 501.v2 SARS CoV2 sequences, (England/CAMC-D3481D/2020 & England/CAMC-D35DA4/2020) from Cambridge, England collected Dec 26.

The sequence for the B.1.1.7 Indiana isolate cited below has not been released and has been assigned and UNK number which will updated when released. USA/IN-CDC-STM-UNK59/2021 USA/IN-CDC-STM-183/2020 12/31 45M Indiana The Indiana Department of Health today announced that a new strain of the virus that causes COVID-19 has been identified in Indiana. The strain, which was identified through testing at the Department of Health laboratory and Centers for Disease Control and Prevention, is the same one identified in the United Kingdom last fall. It does not cause more severe infections, but it is much more easily spread. https://events.in.gov/ev…

Charité Universitätsmedizin Berlin released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, (Germany/BY-ChVir21648/2020, Germany/BY-ChVir21652/2020), from Bavaria Germany collected Dec 22-23.

Florida Bureau of Public Health Laboratories has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, USA/FL-BPHL-2270/2020. collected between Dec 29

Sequences from the four cases below have not been released. They will be assigned UNK numbers and updated when sequences are released USA/MN-CDC-STM-UNK54/2020 USA/MN-CDC-STM-UNK55/2020 USA/MN-CDC-STM-UNK56/2020 USA/MN-CDC-STM-UNK57/2020 USA/MN-CDC-STM-UNK58/2020. USA/MN-MDH-2255/2020 12/26 USA/MN-MDH-2254/2020 12/28 USA/MN-MDH-2253/2020 12/26 USA/MN-MDH-2252/2020 12/18 USA/MN-CDC-STM-153/2020 12/31 23F Minnesota The Minnesota Department of Health (MDH) today announced the new variant strain of the SARS-CoV-2 virus first detected in the United Kingdom was identified by genomic sequencing in positive specimens from five reside…

Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequences, (Italy/APU-IZSPB_406PT/2020), from Lecce, Italy collected Jan 24.

Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata has released (at GISAID) 4 UK Variant B.1.1.7 SARS CoV2 sequences, (Italy/APU-IZSPB_405PT/2020, Italy/APU-IZSPB_408PT/2020, Italy/APU-IZSPB_409PT/2020), from Lecce, Italy collected Jan 22-23.

BRFAA has released (at GISAID) four UK Variant B.1.1.7 SARS CoV2 sequences, (Greece/CP0800981/2020, Greece/CP0800976/2020, Greece/CP0794227/2020, Greece/CP0794239/2020), from Athens Greece collected Dec 30.

KU Leuven, Rega Institute has released (at GISAID) three UK Variant B.1.1.7 SARS CoV2 sequences, (Belgium/rega-an374/2020, Belgium/rega-an375/2020, Belgium/rega-an376/2020) collected Nov 30.

Onderzoeksgroep Virologie has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, Belgium/UGent-365/2020, from Ghent Belgium collected Dec 22.

National Institute of Infectious Diseases has released (at GISAID) a UK Variant B.1.1.7 SARS CoV2 sequence, Romania/GR-93715/2021, from Giurgiu Romania collected between Jan 4.

UK Variant B.1.1.7 SARS CoV2 COVID sequence From Texas has not been made public and will be assigned UNK number below, which will be updated when available. USA/TX-CDC-STM-UNK53/2020 USA/TX-CDC-STM-307/2021 1/2/21 61M Texas The City of Corpus Christi and Nueces County announced the first case of the United Kingdom COVID-19 variant, B.1.1.7, was discovered in the county. Health officials were notified about a local case of the variant by state health officials on Sunday. A Corpus Christi man between 60 and 70 who had recently visited the United Kingdom because of a family emergency, was diagnosed with B.1.1.7. https://www.caller.com/s…

UK Variant B.1.1.7 SARS CoV2 COVID sequence From Texas has not been made public and will be assigned UNK number below, which will be updated when available. This case is included the CDC US map of B.1.1.7 cases, which currently includes 1 in Texas. USA/TX-CDC-STM-UNK49/2020 USA/TX-HMH-MCoV-18037/2020 Houston USA/TX-CDC-9KXP-8438/2020 12/26 32 Texas https://www.cdc.gov/coronavirus/2019-ncov/transmission/variant-cases.html

INDRE has released (at GISAID) UK Variant B.1.1.7 SARS CoV2 sequence, Mexico/TAM-InDRE-94/2020 collected Dec 31.

UK Variant B.1.1.7 SARS CoV2 COVID sequence From Long Island NY has not been made public and will be assigned UNK number below, which will be updated when available. USA/NY-Wadsworth-UNK53/2020 USA/NY-Wadsworth-21001194-01/2020 12/27 64M Nassau County

National Virus Reference Laboratory has released (at GISAID) 501.v2 SARS-CoV2 COVID Sequence, Ireland/D-NVRL-20IRL12122/2020, From Dublin Ireland ex-South Africa collected Dec 29.

RIVM has released (at GISAID) 501.v2 SARS CoV2 COVID Sequence, Netherlands/NB-RIVM-21079/2020, collected Dec 22.

Two UK Variant B.1.1.7 SARS CoV2 COVID sequence From Saratoga Springs NY have not been made public and will be assigned UNK number below, which will be updated when available. USA/NY-Wadsworth-UNK51/2020, USA/NY-Wadsworth-UNK52/2020

UK Variant B.1.1.7 SARS CoV2 COVID sequence From Pennsylvania has not been made public and will be assigned UNK number below, which will be updated when available. This case is included the CDC US map of B.1.1.7 cases, which currently includes 1 in Pennsylvania. USA/PA-CDC-STM-UNK50/2020 USA/PA-CDC-STM-119/2020 12/28 https://www.cdc.gov/coronavirus/2019-ncov/transmission/variant-cases.html

UK Variant B.1.1.7 SARS CoV2 COVID Sequence From Georgia has not been made public and will be assigned UNK number below, which will be updated when available. This case is included the CDC US map of B.1.1.7 cases, which currently includes 1 in Georgia. USA/GA-CDC-STM-UNK48/2020 USA/GA-CDC-STM-133/2020 12/29 https://www.cdc.gov/coronavirus/2019-ncov/transmission/variant-cases.html

21 UK Variant B.1.1.7 SARS CoV2 COVID Sequences From Florida have not been made public and will be assigned UNK numbers below, which will be updated when available. These cases are included the CDC US map of B.1.1.7 cases, which currently includes 22 in Florida. USA/FL-CDC-STM-UNK25/2020, USA/FL-CDC-STM-UNK26/2020, USA/FL-CDC-STM-UNK27/2020, USA/FL-CDC-STM-UNK28/2020, USA/FL-CDC-STM-UNK29/2020, USA/FL-CDC-STM-UNK30/2020, USA/FL-CDC-STM-UNK31/2020, USA/FL-CDC-STM-UNK32/2020, USA/FL-CDC-STM-UNK33/2020, USA/FL-CDC-STM-UNK34/2020, USA/FL-CDC-STM-UNK35/2020, USA/FL-CDC-STM-UNK36/2020, USA/FL-CDC-STM-UNK37/2020, USA/FL-CDC-STM-UNK38/2020, USA/FL-CDC-STM-UNK39/2020, USA/FL…

24 UK Variant B.1.1.7 SARS CoV2 COVID Sequences From San Diego Co California have not been made public and will be assigned UNK numbers below, which will be updated when available. These cases are included the CDC US map of B.1.1.7 cases, which currently includes 32 in California. USA/CA-CDC-STM-UNK1/2020, USA/CA-CDC-STM-UNK2/2020, USA/CA-CDC-STM-UNK3/2020, USA/CA-CDC-STM-UNK4/2020, USA/CA-CDC-STM-UNK5/2020, USA/CA-CDC-STM-UNK6/2020, USA/CA-CDC-STM-UNK7/2020, USA/CA-CDC-STM-UNK8/2020, USA/CA-CDC-STM-UNK9/2020, USA/CA-CDC-STM-UNK10/2020, USA/CA-CDC-STM-UNK11/2020. USA/CA-CDC-STM-UNK12/2020, USA/CA-CDC-STM-UNK13/2020, USA/CA-CDC-STM-UNK14/2020, USA/CA-CDC-STM-UNK15/20…