Jump to content
Pandemic Potentials Blog

niman

Super Administrators
 View Profile  See their activity

  • Posts

    74,774

  • Joined

  • Last visited

  • Days Won

    31

 Content Type 

Everything posted by niman

  1. niman
    Align Segment-ID Name Score E-Value Identity EPI869677 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2264/2271 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4135.8 0.000000e+00 2262/2274 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4130.2 0.000000e+00 2261/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2260/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4071.1 0.000000e+00 2250/2275 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3875.4 0.000000e+00 2212/2269 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3855.1 0.000000e+00 2200/2257 (97%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3845.8 0.000000e+00 2211/2275 (97%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3845.8 0.000000e+00 2211/2275 (97%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI704412 A/duck/Mongolia/543/2015 (A/H4N6) segment 2 (PB1) 3834.8 0.000000e+00 2209/2275 (97%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3834.8 0.000000e+00 2208/2274 (97%
  2. niman
    Align Segment-ID Name Score E-Value Identity EPI869676 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI867457 A/mute swan/Croatia/70/2016 (A/H5N8) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI618102 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI749574 A/Environment/Chongqing/45208/2015 (A/H5N6) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI527564 A/common goldeneye/Mongolia/1216/2010 (A/H1N1) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI527545 A/tufted duck/Mongolia/1409/2010 (A/H1N1) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI527563 A/common goldeneye/Mongolia/1238/2010 (A/H1N1) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI618117 A/black-headed gull/Republic of Georgia/1/2010 (A/H11N1) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI324555 A/quail/Lebanon/273/2010 (A/H9N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI617950 A/black-headed gull/Republic of Georgia/2/2011 (A/H9N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%) EPI692509 A/duck/Hunan/S1166/2010 (A/H4N6) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%) EPI750103 A/chicken/Taiwan/01174/2015 (A/H5N3) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI588965 A/chicken/Taiwan/a174/2015 (A/H5N3) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI617839 A/black-headed gull/Republic of Georgia/9/2012 (A/H2N5) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI463584 A/tundra swan/Shimane/3211A001/2011 (A/H5N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI750183 A/goose/Taiwan/01038/2015 (A/H5N3) segment 1 (PB2) 3818.1 0.000000e+00 2211/2282 (96%) EPI588973 A/duck/Taiwan/a068/2015 (A/H5N8) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI574291 A/duck/Vietnam/LBM48/2011 (A/H3N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI401796 A/canvasback/Xianghai/428/2011 (A/H5N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI617989 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI560058 A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI469129 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI750185 A/goose/Taiwan/01042/2015 (A/H5N3) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI750111 A/duck/Taiwan/A3400/2015 (A/H5N8) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI527553 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%) EPI372391 A/Egyptian goose/Egypt/05588-NAMRU3/2006 (A/H7N7) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI617797 A/black-headed gull/Republic of Georgia/7/2012 (A/H2N7) segment 1 (PB2) 3790.4 0.000000e+00 2205/2281 (96%) EPI596394 A/muscovy duck/Vietnam/LBM115/2012 (A/H3N2) segment 1 (PB2) 3784.9 0.000000e+00 2203/2280 (96%) EPI775005 A/duck/Hebei/B1647-1/2011 (A/H3N2) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI775000 A/duck/Shanghai/120-1/2009 (A/H3N8) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI395159 A/duck/Vietnam/LBM1/2011 (A/H4N6) segment 1 (PB2) 3779.4 0.000000e+00 2203/2281 (96%) EPI692469 A/duck/Henan/S4179/2009 (A/H4N6) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI619253 A/mallard/Sweden/5994/2005 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI387906 A/mallard/Korea/1041/2010 (A/H10N8) segment 1 (PB2) 3773.8 0.000000e+00 2201/2280 (96%) EPI361736 A/lesser whistling-duck/Thailand/CU-W3946/2010 (A/H12N1) segment 1 (PB2) 3773.8 0.000000e+00 2183/2253 (96%) EPI618220 A/mallard/Sweden/5944/2005 (A/H7N7) segment 1 (PB2) 3768.3 0.000000e+00 2201/2281 (96%) EPI619239 A/mallard/Sweden/5927/2005 (A/H0) segment 1 (PB2) 3762.7 0.000000e+00 2200/2281 (96%) EPI262712 A/aquatic bird/Korea/w347/2008 (A/H5N2) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI602452 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI599870 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI508037 A/wild duck/Korea/CSM42-34/2011 (A/H7N9) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI508036 A/wild duck/Korea/CSM42-1/2011 (A/H7N9) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI461612 A/duck/Hunan/S11893/2012 (A/H4N6) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI703416 A/duck/Yunan/V286/2012 (A/H1N2) segment 1 (PB2) 3749.8 0.000000e+00 2184/2261 (96%) EPI602445 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602438 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602400 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602379 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602372 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI599877 A/duck/Jiangxi/33779/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI599856 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI599835 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602386 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 1 (PB2) 3742.4 0.000000e+00 2195/2280 (96%) EPI602326 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 1 (PB2) 3742.4 0.000000e+00 2195/2280 (96%) EPI361726 A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 1 (PB2) 3742.4 0.000000e+00 2175/2249 (96%) EPI602424 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602393 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602347 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602340 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602333 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI599863 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI599842 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI599828 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI372493 A/pied avocet/Ukraine/05848-NAMRU3/2006 (A/H10N4) segment 1 (PB2) 3740.6 0.000000e+00 2197/2282 (96%) EPI602431 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 1 (PB2) 3735.0 0.000000e+00 2193/2280 (96%) EPI602407 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 1 (PB2) 3735.0 0.000000e+00 2194/2280 (96%) EPI703415 A/duck/Fujian/JF47/2014 (A/H1N1) segment 1 (PB2) 3733.2 0.000000e+00 2181/2261 (96%) EPI599849 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 1 (PB2) 3729.5 0.000000e+00 2194/2281 (96%) EPI600182 A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600176 A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600170 A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600162 A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600156 A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI591921 A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI361746 A/lesser whistling-duck/Thailand/CU-W3947/2010 (A/H12N1) segment 1 (PB2) 3720.3 0.000000e+00 2164/2239 (96%) EPI372280 A/shoveler/Egypt/00597-NAMRU3/2004 (A/H7N1) segment 1 (PB2) 3718.4 0.000000e+00 2192/2281 (96%) EPI395168 A/muscovy duck/Vietnam/LBM14/2011 (H3N2) (A/H3N2) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI361718 A/watercock/Thailand/CU-W3699/2009 (A/H12N1) segment 1 (PB2) 3709.2 0.000000e+00 2176/2259 (96%) EPI372509 A/garganey/Ukraine/05835-NAMRU3/2006 (A/H8N4) segment 1 (PB2) 3707.3 0.000000e+00 2191/2282 (96%) EPI372383 A/teal/Egypt/13203-NAMRU3/2006 (A/H6N2) segment 1 (PB2) 3701.8 0.000000e+00 2190/2282 (95%) EPI363564 A/wild duck/Jiangxi/8462/2006 (A/H6N1) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI296631 A/mallard/Sweden/95/2005 (A/H7N7) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI591915 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI372368 A/shoveler/Egypt/13251-NAMRU3/2006 (A/H6N2) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%) EPI372288 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2188/2281 (95%) EPI591909 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 1 (PB2) 3690.7 0.000000e+00 2186/2280 (95%) EPI372304 A/teal/Egypt/00835-NAMRU3/2004 (A/H7N7) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%) EPI372296 A/teal/Egypt/00688-NAMRU3/2004 (A/H11N9) segment 1 (PB2) 3690.7 0.000000e+00 2188/2282 (95%) EPI270059 A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%) EPI618307 A/mallard/Sweden/68621/2007 (A/H11N9) segment 1 (PB2) 3685.2 0.000000e+00 2187/2282 (95%) EPI513753 A/mallard/Sweden/79978/2008 (A/H4N6) segment 1 (PB2) 3679.6 0.000000e+00 2186/2282 (95%) EPI618293 A/mallard/Sweden/69639/2007 (A/H11N9) segment 1 (PB2) 3674.1 0.000000e+00 2185/2282 (95%) EPI618544 A/mallard/Sweden/101754/2009 (A/H0) segment 1 (PB2) 3668.6 0.000000e+00 2184/2282 (95%) EPI514604 A/mallard/Sweden/50108/2006 (A/H4N6) segment 1 (PB2) 3668.6 0.000000e+00 2183/2281 (95%) EPI178535 A/Duck/Italy/62330/2006 (A/H10N7) segment 1 (PB2) 3668.6 0.000000e+00 2184/2282 (95%) EPI618253 A/mallard/Sweden/79390/2008 (A/H11N9) segment 1 (PB2) 3663.0 0.000000e+00 2183/2282 (95%) EPI310338 A/duck/Zambia/04/2008 (A/H3N8) segment 1 (PB2) 3663.0 0.000000e+00 2183/2282 (95%) EPI704296 A/duck/Mongolia/141/2015 (A/H0N2) segment 1 (PB2) 3657.5 0.000000e+00 2180/2280 (95%) EPI372320 A/shoveler/Egypt/09864-NAMRU3/2004 (A/H7N7) segment 1 (PB2) 3657.5 0.000000e+00 2182/2282 (95%) EPI704500 A/duck/Mongolia/326/2015 (A/H10N3) segment 1 (PB2) 3651.9 0.000000e+00 2179/2280 (95%)
  3. niman
    Align Segment-ID Name Score E-Value Identity EPI869682 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1796.1 0.000000e+00 976/978 (99%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 976/982 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 976/982 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 976/982 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1694.5 0.000000e+00 960/982 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%)
  4. niman
    Align Segment-ID Name Score E-Value Identity EPI869681 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1397/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1396/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1395/1407 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1389/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1383/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2459.0 0.000000e+00 1381/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1377/1406 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1373/1407 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1371/1407 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2390.7 0.000000e+00 1350/1378 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1368/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1366/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1357/1398 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1351/1394 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1359/1406 (96%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1352/1395 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1358/1406 (96%)
  5. niman
    Align Segment-ID Name Score E-Value Identity EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4193.0 0.000000e+00 2270/2270 (100%) EPI869677 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4154.2 0.000000e+00 2263/2270 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4143.2 0.000000e+00 2261/2270 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4137.6 0.000000e+00 2260/2270 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4137.6 0.000000e+00 2260/2270 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2257/2270 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4121.0 0.000000e+00 2257/2270 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4119.1 0.000000e+00 2256/2270 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4119.1 0.000000e+00 2256/2270 (99%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2256/2270 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2255/2270 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4115.5 0.000000e+00 2256/2270 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4109.9 0.000000e+00 2255/2270 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2250/2264 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4104.4 0.000000e+00 2254/2270 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4098.8 0.000000e+00 2253/2270 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4093.3 0.000000e+00 2252/2270 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2250/2268 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4082.2 0.000000e+00 2251/2271 (99%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2246/2272 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3910.5 0.000000e+00 2220/2271 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3904.9 0.000000e+00 2219/2271 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3882.8 0.000000e+00 2216/2272 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3882.8 0.000000e+00 2215/2271 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3877.2 0.000000e+00 2214/2271 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3871.7 0.000000e+00 2214/2272 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3871.7 0.000000e+00 2213/2271 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3871.7 0.000000e+00 2213/2271 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3866.2 0.000000e+00 2213/2272 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3866.2 0.000000e+00 2213/2272 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3866.2 0.000000e+00 2213/2272 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3866.2 0.000000e+00 2212/2271 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3866.2 0.000000e+00 2212/2271 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3860.6 0.000000e+00 2211/2271 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3860.6 0.000000e+00 2211/2271 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3855.1 0.000000e+00 2210/2271 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3849.5 0.000000e+00 2207/2268 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3844.0 0.000000e+00 2208/2271 (97%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3844.0 0.000000e+00 2208/2271 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3838.5 0.000000e+00 2207/2271 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3838.5 0.000000e+00 2207/2271 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3838.5 0.000000e+00 2207/2271 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3838.5 0.000000e+00 2207/2271 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3832.9 0.000000e+00 2206/2271 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3832.9 0.000000e+00 2207/2272 (97%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3832.9 0.000000e+00 2206/2271 (97%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3832.9 0.000000e+00 2206/2271 (97%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3827.4 0.000000e+00 2205/2271 (97%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3825.5 0.000000e+00 2193/2254 (97%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3821.8 0.000000e+00 2205/2272 (97%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3816.3 0.000000e+00 2203/2271 (97%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3816.3 0.000000e+00 2204/2272 (97%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3816.3 0.000000e+00 2203/2271 (97%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3816.3 0.000000e+00 2203/2271 (97%) EPI704412 A/duck/Mongolia/543/2015 (A/H4N6) segment 2 (PB1) 3810.8 0.000000e+00 2203/2272 (96%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3810.8 0.000000e+00 2202/2271 (96%)
  6. niman
    Isolate name: A/mute swan/Croatia/70/2016 Isolate ID: EPI_ISL_238196 Passage details/history: 0 Type: A / H5N8 Lineage: Sample information Collection date: 2016-10-30 Host Cygnus olor Additional host information: Domestic status: Wild Is vaccinated: Location: Croatia / Vukovarsko-Srijemska Zupanija Additional location information: Cerna, river Bid Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: Croatian Veterinary Institute Sample ID given by the submitting laboratory: Authors: Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/mute swan/Croatia/70/2016 2289 EPI867457 PB1 A/mute swan/Croatia/70/2016 2287 EPI869084 PA A/mute swan/Croatia/70/2016 2171 EPI867456 HA A/mute swan/Croatia/70/2016 1729 EPI861568 NP A/mute swan/Croatia/70/2016 1524 EPI865159 NA A/mute swan/Croatia/70/2016 1425 EPI861569 MP A/mute swan/Croatia/70/2016 983 EPI861570 NS A/mute swan/Croatia/70/2016 838 EPI861571 Submitter information Submitter: Savić, Vladimir Submission Date: 2016-11-24 Last modifier: Savić, Vladimir Last modified: 2016-12-23 Address: Croatian Veterinary Institute Poultry Centre Heinzelova 55 10000 Zagreb Croatia
  7. niman
    Align Segment-ID Name Score E-Value Identity EPI869679 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1694/1705 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1689/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI675774 A/duck/Liaoning/S1001/2014 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1668/1704 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1664/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1598/1609 (99%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2911.4 0.000000e+00 1660/1702 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1662/1705 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1661/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1661/1704 (97%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1660/1704 (97%) EPI749889 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1660/1705 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1658/1705 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2876.4 0.000000e+00 1655/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2876.4 0.000000e+00 1656/1705 (97%)
  8. niman
    Isolate name: A/decoy_duck/France/161104e/2016 Isolate ID: EPI_ISL_239997 Passage details/history: field sample Type: A / H5N8 Lineage: Sample information Collection date: 2016-11-26 Host Duck Additional host information: Domestic status: Is vaccinated: Location: France / Region Nord-Pas-De Calais / Departement du Pas-de-Calais Additional location information: Health status: Specimen source: Tracheal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Anses (Ploufragan-Plouzané) Sample ID given by the sample provider: Address: Anses (Ploufragan-Plouzané) Rue de Beaucemaine 22440 Ploufragan France Submitting lab: French Agency for Food, Environmental and Occupational Health Sample ID given by the submitting laboratory: Authors: Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/decoy_duck/France/161104e/2016 2280 EPI869684 PB2 A/duck/France/161108h/2016 2341 EPI869676 PB1 A/decoy_duck/France/161104e/2016 2297 EPI869685 PB1 A/duck/France/161108h/2016 2297 EPI869677 PA A/duck/France/161108h/2016 2228 EPI869678 PA A/decoy_duck/France/161104e/2016 2151 EPI869686 HA A/duck/France/161108h/2016 1772 EPI869679 HA A/decoy_duck/France/161104e/2016 1704 EPI869687 NP A/duck/France/161108h/2016 1565 EPI869680 NP A/decoy_duck/France/161104e/2016 1463 EPI869688 NA A/decoy_duck/France/161104e/2016 1411 EPI869689 NA A/duck/France/161108h/2016 1413 EPI869681 MP A/duck/France/161108h/2016 982 EPI869682 MP A/decoy_duck/France/161104e/2016 982 EPI869690 NS A/duck/France/161108h/2016 882 EPI869683 NS A/decoy_duck/France/161104e/2016 835 EPI869691 Submitter information Submitter: Briand, Francois-Xavier Submission Date: 2016-12-26 Last modifier: Briand, Francois-Xavier Last modified: 2016-12-26 Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France
  9. niman
    French Agency for Food, Environmental and Occupational Health has released two sets of sequences from a duck from Nord-Pas-De Calais.
  10. niman
    Outbreak report of Highly path. avian influenza (- -) in Greece Date of start of the event 14/12/2016 Outbreak Status Continuing Date of resolution of the outbreak Province ANATOLIKI MAKEDONIA KAI THRAKI District Sub-district Epidemiological Unit Type Natural park Location Evros river delta Latitude 40.766786 Longitude 26.056178 Description of Affected Population Affected animals Species At risk Cases Deaths Destroyed Mute Swan 1 1 0 Total Animals 0 1 1 0
  11. niman
    Highly pathogenic avian influenza, Greece Information received on 23/12/2016 from Mr Spiros Doudounakis, Director, Animal Health Directorate, Directorate General of Veterinary Services / Animal Health Directorare , Ministry of Rural Development and Food , ATHENS, Greece Summary Report type Immediate notification Date of start of the event 14/12/2016 Date of confirmation of the event 19/12/2016 Report date 23/12/2016 Date submitted to OIE 23/12/2016 Reason for notification New strain of a listed disease in the country Causal agent Influenza A virus Serotype H5N8 Nature of diagnosis Laboratory (basic), Laboratory (advanced) This event pertains to the whole country New outbreaks (1) Outbreak 1 (AI/1/2016) Evros river delta, ANATOLIKI MAKEDONIA KAI THRAKI Date of start of the outbreak 14/12/2016 Outbreak status Continuing (or date resolved not provided) Epidemiological unit Natural park Affected animals Species Susceptible Cases Deaths Destroyed Slaughtered Mute Swan:Cygnus olor(Anatidae) 1 1 0 0 Summary of outbreaks Total outbreaks: 1 Total animals affected Species Susceptible Cases Deaths Destroyed Slaughtered Mute Swan:Cygnus olor(Anatidae) 1 1 0 0 Outbreak statistics Species Apparent morbidity rate Apparent mortality rate Apparent case fatality rate Proportion susceptible animals lost* Mute Swan:Cygnus olor(Anatidae) ** ** 100.00% ** *Removed from the susceptible population through death, destruction and/or slaughter **Not calculated because of missing information Epidemiology Source of the outbreak(s) or origin of infection Unknown or inconclusive Control measures Measures applied Vaccination prohibited No treatment of affected animals Measures to be applied No other measures Diagnostic test results Laboratory name and type Species Test Test date Result Directorate of Veterinary Center of Thessaloniki / Laboratory of Avian Pathology (National Reference Laboratory for AI) (National laboratory) Mute Swan polymerase chain reaction (PCR) 19/12/2016 Positive Future Reporting The event is continuing. Weekly follow-up reports will be submitted. Map of outbreak locations http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapEventSummary&reportid=22014
  12. niman
    Pennsylvania: Shelter cats may have avian flu By Associated Press December 23 at 1:53 PM HARRISBURG, Pa. — Pennsylvania agriculture officials are warning that a dozen shelter cats may have been exposed to an avian flu virus similar to one that spread through the poultry industry a decade ago. The state Department of Agriculture says the cats came from New York City shelters and have been put in quarantine in three Chester County shelters. Officials say the virus is not harmful to humans. But they are reminding people to wash their hands frequently during flu season. Authorities are also reaching out to anyone who brought cats home from the affected shelters to see if they have backyard poultry. The 2002-2003 outbreak caused millions of dollars in losses to the poultry industry in Virginia and Pennsylvania. State veterinarian Dr. David Wolfgang says there’s no evidence any poultry flocks have been exposed. https://www.washingtonpost.com/national/pennsylvania-shelter-cats-may-have-avian-flu/2016/12/23/0bfcf7da-c941-11e6-acda-59924caa2450_story.html?utm_term=.b505a4c610cc
  13. niman
    Map Update Main Line https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1E-GiK3kfvi7q21vE1RhtxZnPqKY&ll=40.111858877314404%2C-75.59222143783569&z=17
  14. niman
    Map Update Philadelphia Armory https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1E-GiK3kfvi7q21vE1RhtxZnPqKY&ll=39.953504314803105%2C-75.17870733620225&z=19
  15. niman
    Align Segment-ID Name Score E-Value Identity EPI125553 A/chicken/PA/143586/01 (A/H7N2) segment 8 (NS) 1548.6 0.000000e+00 838/838 (100%) EPI236437 A/Turkey/NC/11165/02 (A/H7N2) segment 8 (NS) 1524.6 0.000000e+00 833/837 (99%) EPI18249 A/turkey/VA/55/02 (A/H7N2) segment 8 (NS) 1524.6 0.000000e+00 833/837 (99%) EPI18246 A/Turkey/VA/158512/02 (A/H7N2) segment 8 (NS) 1524.6 0.000000e+00 833/837 (99%) EPI18228 A/chicken/VA/32/02 (A/H7N2) segment 8 (NS) 1519.1 0.000000e+00 832/837 (99%) EPI159003 A/chicken/CT/260413-2/2003 (A/H7N2) segment 8 (NS) 1509.8 0.000000e+00 831/838 (99%) EPI235149 A/environment/NY/241365-18/2003 (A/H7N2) segment 8 (NS) 1508.0 0.000000e+00 830/837 (99%) EPI18255 A/turkey/VA/67/02 (A/H7N2) segment 8 (NS) 1508.0 0.000000e+00 830/837 (99%) EPI18252 A/turkey/VA/66/02 (A/H7N2) segment 8 (NS) 1508.0 0.000000e+00 830/837 (99%) EPI18152 A/avian/NY/81746-5/00 (A/H7N2) segment 8 (NS) 1508.0 0.000000e+00 830/837 (99%) EPI18198 A/chicken/NY/21586-8/99 (A/H7N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI18195 A/Chicken/NY/14858-12/99 (A/H7N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI18168 A/Chicken/NJ/16224-6/99 (A/H7N2) segment 8 (NS) 1504.3 0.000000e+00 830/838 (99%) EPI159011 A/environment/NY/260422-10/2003 (A/H7N2) segment 8 (NS) 1498.8 0.000000e+00 829/838 (98%) EPI307277 A/chicken/MD/MinhMa/2004 (A/H7N2) segment 8 (NS) 1496.9 0.000000e+00 828/837 (98%) EPI18146 A/avian/NY/70411-12/00 (A/H7N2) segment 8 (NS) 1493.2 0.000000e+00 828/838 (98%) EPI235157 A/environmental/NY/268925-10/2003 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI160781 A/chicken/New York/23165-11/2005 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI160773 A/chicken/New York/23165-10/2005 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI160765 A/environment/New York/23165-5/2005 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI156533 A/muscovy duck/New York/23165-13/2005 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI154165 A/New York/107/2003 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI152949 A/guinea fowl/New York/23165-12/2005 (A/H7N2) segment 8 (NS) 1491.4 0.000000e+00 827/837 (98%) EPI177139 A/chicken/New York/23165-9/2005 (A/H7N2) segment 8 (NS) 1487.7 0.000000e+00 826/837 (98%) EPI18231 A/guineafowl/MA/148081-11/02 (A/H7N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI18204 A/chicken/NY/30749-3/00 (A/H7N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI18201 A/chicken/NY/22409-4/99 (A/H7N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI18183 A/chicken/NY/119256-7/01 (A/H7N2) segment 8 (NS) 1487.7 0.000000e+00 827/838 (98%) EPI18162 A/chicken/NJ/150383-7/02 (A/H7N2) segment 8 (NS) 1487.7 0.000000e+00 823/832 (98%) EPI327548 A/chicken/New York/16326-3/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327529 A/chicken/New York/23164-8/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327524 A/environment/New York/23165-3/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327519 A/environment/New York/30732-5/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327515 A/environment/New York/31621-4/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327510 A/chicken/New York/31621-6/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327508 A/chicken/New York/31621-7/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI327507 A/muscovy duck/New York/31621-10/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI172247 A/environment/New York/88291-2/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI171081 A/environment/New York/88291-3/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI171065 A/environment/New York/30732-1/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI167362 A/unknown/New York/88291-16/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI167346 A/Guinea fowl/New York/88291-9/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI167330 A/environment/New York/31621-1/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI160853 A/unknown/New York/88291-17/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI160805 A/environment/New York/31621-5/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI158841 A/chicken/NJ/294508-12/2004 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156589 A/guinea fowl/New York/31621-8/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156581 A/environment/New York/31621-2/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156573 A/muscovy duck/New York/30732-13/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156565 A/chicken/New York/30732-11/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156557 A/chicken/New York/30732-10/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156549 A/chicken/New York/30732-9/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156541 A/chicken/New York/30732-8/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI156525 A/environment/New York/23165-1/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI152973 A/chicken/New York/31621-9/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI152965 A/environment/New York/31621-3/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI152957 A/quail/New York/30732-12/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI152909 A/chicken/New York/23164-5/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI152877 A/guinea fowl/New York/22071/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141608 A/chicken/New York/23165-7/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141600 A/environment/New York/23165-4/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141488 A/turkey/New York/30732-7/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141480 A/chicken/New York/30732-6/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141472 A/environment/New York/30732-4/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141464 A/environment/New York/30732-3/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141456 A/environment/New York/30732-2/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI141440 A/chicken/New York/23165-6/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI131777 A/chicken/New York/16326-4/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI76976 A/environment/New York/16326-2/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI63666 A/chicken/New York/16330/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI63647 A/chicken/New York/16326-5/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI63628 A/environment/New York/16326-1/2005 (A/H7N2) segment 8 (NS) 1485.8 0.000000e+00 826/837 (98%) EPI177147 A/environment/New York/88291-4/2005 (A/H7N2) segment 8 (NS) 1482.1 0.000000e+00 825/837 (98%) EPI164862 A/chicken/New York/88291-8/2005 (A/H7N2) segment 8 (NS) 1482.1 0.000000e+00 825/837 (98%) EPI327538 A/environment/New York/641/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI327533 A/chicken/New York/23164-4/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI327482 A/turkey/New York/88291-7/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI172271 A/chicken/New York/88291-15/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI172263 A/chicken/New York/88291-14/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI172255 A/duck/New York/88291-12/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI172239 A/environment/New York/88291-1/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI171073 A/environment/New York/81928-2/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI167354 A/chicken/New York/88291-10/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI160861 A/quail/New York/89641/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI160837 A/chicken/New York/88291-11/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI160829 A/chicken/New York/88291-6/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI160821 A/environment/New York/88291-5/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI152941 A/turkey/New York/23164-11/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI152933 A/muscovy duck/New York/23164-10/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI152925 A/chicken/New York/23164-9/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI152917 A/chicken/New York/23164-7/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI152901 A/guinea fowl/New York/23164-3-05/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI152885 A/environment/New York/23164-1/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI141592 A/chicken/New York/23164-6/2005 (A/H7N2) segment 8 (NS) 1480.3 0.000000e+00 825/837 (98%) EPI159058 A/unknown/NY/85161/2000 (A/H7N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI159027 A/guinea fowl/NJ/119063-8/2001 (A/H7N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI18149 A/avian/NY/76247-3/00 (A/H7N2) segment 8 (NS) 1476.6 0.000000e+00 825/838 (98%) EPI327502 A/environment/New York/63806-1/2005 (A/H7N2) segment 8 (NS) 1474.7 0.000000e+00 824/837 (98%) EPI327500 A/environment/New York/63806-2/2005 (A/H7N2) segment 8 (NS) 1474.7 0.000000e+00 824/837 (98%) EPI327495 A/environment/New York/63806-5/2005 (A/H7N2) segment 8 (NS) 1474.7 0.000000e+00 824/837 (98%)
  16. niman
    Align Segment-ID Name Score E-Value Identity EPI125551 A/chicken/PA/143586/01 (A/H7N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI42781 A/chicken/Pennsylvania/143586/2002 (A/H7N2) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI307278 A/chicken/MD/MinhMa/2004 (A/H7N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI235148 A/environment/NY/241365-18/2003 (A/H7N2) segment 5 (NP) 2693.5 0.000000e+00 1484/1497 (99%) EPI159018 A/environment/NY/260422-10/2003 (A/H7N2) segment 5 (NP) 2688.0 0.000000e+00 1483/1497 (99%) EPI159010 A/chicken/CT/260413-2/2003 (A/H7N2) segment 5 (NP) 2682.5 0.000000e+00 1482/1497 (98%) EPI177138 A/chicken/New York/23165-9/2005 (A/H7N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI160764 A/environment/New York/23165-5/2005 (A/H7N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI156524 A/environment/New York/23165-1/2005 (A/H7N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI152876 A/guinea fowl/New York/22071/2005 (A/H7N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI141599 A/environment/New York/23165-4/2005 (A/H7N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI122306 A/chicken/NY/119256-7/01 (A/H7N2) segment 5 (NP) 2671.4 0.000000e+00 1480/1497 (98%) EPI327525 A/environment/New York/23165-3/2005 (A/H7N2) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI327505 A/unknown/New York/38651/2005 (A/H7N2) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI235156 A/environmental/NY/268925-10/2003 (A/H7N2) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI160772 A/chicken/New York/23165-10/2005 (A/H7N2) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI158840 A/goose/NY/8600-3/1998 (A/H7N2) segment 5 (NP) 2665.8 0.000000e+00 1479/1497 (98%) EPI172310 A/chicken/New York/87493-2/2005 (A/H7N2) segment 5 (NP) 2662.1 0.000000e+00 1478/1497 (98%) EPI227193 A/environment/New York/30720-1/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI164853 A/Muscovy duck/New York/87493-3/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI160780 A/chicken/New York/23165-11/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI160756 A/duck/New York/22067-11/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI160748 A/guinea fowl/New York/22067-10/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI159050 A/unknown/NY/ 117932-11/2001 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI159042 A/unknown/NY/120485-5/2001 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI156532 A/muscovy duck/New York/23165-13/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI156516 A/chicken/New York/22067-9/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI156508 A/chicken/New York/22067-8/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI156500 A/environment/New York/22067-6/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI152948 A/guinea fowl/New York/23165-12/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI152868 A/chicken/New York/22067-12/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI152860 A/chicken/New York/22067-7/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI141447 A/environment/New York/30720-3/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI141423 A/environment/New York/22067-5/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI141415 A/environment/New York/22067-4/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI131832 A/environment/New York/22067-2/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI131813 A/environment/New York/22067-1/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI125561 A/chicken/NJ/118878-5/01 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI63569 A/environment/New York/11678-2/2005 (A/H7N2) segment 5 (NP) 2660.3 0.000000e+00 1478/1497 (98%) EPI327486 A/chicken/New York/87493-1/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1475/1494 (98%) EPI227005 A/chicken/New York/11678-5/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI171064 A/environment/New York/30732-1/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI167401 A/chicken/New York/122501-1/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI167393 A/unknown/New York/13479-2/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI164957 A/turkey/New York/122501-2/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI164949 A/unknown/New York/13479-5/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI164941 A/unknown/New York/13479-3/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI156604 A/chicken/New York/37982-4/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI156572 A/muscovy duck/New York/30732-13/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI156564 A/chicken/New York/30732-11/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI156556 A/chicken/New York/30732-10/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI156548 A/chicken/New York/30732-9/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI156540 A/chicken/New York/30732-8/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI152996 A/chicken/New York/42217/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI152988 A/guinea fowl/New York/37982-3/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI152956 A/quail/New York/30732-12/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI141487 A/turkey/New York/30732-7/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI141479 A/chicken/New York/30732-6/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI141463 A/environment/New York/30732-3/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI141455 A/environment/New York/30732-2/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI120346 A/avian/NY/118353-1/2001 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI68415 A/environment/New York/22067-3/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI68377 A/chicken/New York/21211-1/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI63702 A/duck/New York/21211-6/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI63683 A/chicken/New York/21211-2/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI63607 A/environment/New York/11678-4/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI63550 A/environment/New York/11678-1/2005 (A/H7N2) segment 5 (NP) 2654.8 0.000000e+00 1477/1497 (98%) EPI141567 A/environment/New York/10196-2/2005 (A/H7N2) segment 5 (NP) 2652.9 0.000000e+00 1476/1497 (98%) EPI327520 A/environment/New York/30732-5/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI177162 A/unknown/New York/13479-4/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI167385 A/unknown/New York/13479-1/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI164933 A/unknown/New York/11675/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI160724 A/environment/New York/10196-3/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI159034 A/guinea fowl/NJ/119063-8/2001 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI156596 A/environment/New York/37982-2/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI141583 A/guinea fowl/New York/10196-7/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI141471 A/environment/New York/30732-4/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI68396 A/chukar/New York/21211-7/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI63588 A/environment/New York/11678-3/2005 (A/H7N2) segment 5 (NP) 2649.2 0.000000e+00 1476/1497 (98%) EPI159065 A/unknown/NY/85161/2000 (A/H7N2) segment 5 (NP) 2645.5 0.000000e+00 1475/1497 (98%) EPI307291 A/turkey/VA/SEP-67/2002 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI235952 A/guinea hen/MA/14801-11/2002 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI164877 A/duck/New York/98616-5/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI164869 A/duck/New York/98616-4/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI160740 A/chicken/New York/10196-5/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI160732 A/chicken/New York/10196-4/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI159066 A/turkey/VA/158512/2002 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI152980 A/environment/New York/37982-1/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI141607 A/chicken/New York/23165-7/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI141575 A/chicken/New York/10196-6/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI141559 A/environment/New York/10196-1/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI141439 A/chicken/New York/23165-6/2005 (A/H7N2) segment 5 (NP) 2643.7 0.000000e+00 1475/1497 (98%) EPI158570 A/chicken/PA/7777-1/1997 (A/H7N2) segment 5 (NP) 2640.0 0.000000e+00 1473/1495 (98%) EPI158555 A/chicken/PA/11767/1997 (A/H7N2) segment 5 (NP) 2640.0 0.000000e+00 1473/1495 (98%) EPI164893 A/Guinea fowl/New York/101276-1/2005 (A/H7N2) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%) EPI162357 A/turkey/VA/55/2002 (A/H7N2) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%) EPI160860 A/quail/New York/89641/2005 (A/H7N2) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%) EPI122293 A/chicken/NY/30749-3/00 (A/H7N2) segment 5 (NP) 2638.1 0.000000e+00 1474/1497 (98%) EPI172278 A/Guinea fowl/New York/98616-3/2005 (A/H7N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%) EPI160868 A/environment/New York/98616-2/2005 (A/H7N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%)
  17. niman
    Align Segment-ID Name Score E-Value Identity EPI125549 A/chicken/PA/143586/01 (A/H7N2) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI168762 A/avian/New York/Sg-00365/2001 (A/H7N2) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI168722 A/avian/New York/Sg-00354/2000 (A/H7N2) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI188105 A/avian/New York/Sg-00368/2001 (A/H7N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI168813 A/chicken/New Jersey/Sg-00379/2001 (A/H7N2) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI236951 A/avian/New York/Sg-00372/2001 (A/H5N2) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI168802 A/avian/New York/Sg-00376/2001 (A/H7N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI168750 A/avian/New York/Sg-00362/2001 (A/H7N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI159049 A/unknown/NY/ 117932-11/2001 (A/H7N2) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI168770 A/avian/New York/Sg-00367/2001 (A/H7N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI168718 A/avian/New York/Sg-00353/2000 (A/H7N2) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI168841 A/chicken/New York/Sg-00386/2001 (A/H7N2) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI166610 A/avian/New York/Sg-00348/2000 (A/H7N2) segment 3 (PA) 3858.8 0.000000e+00 2117/2131 (99%) EPI168861 A/guinea fowl/New Jersey/Sg-00391/2002 (A/H7N2) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI168833 A/chicken/New York/Sg-00384/2001 (A/H7N2) segment 3 (PA) 3856.9 0.000000e+00 2130/2151 (99%) EPI168869 A/environment/New Jersey/Sg-00393/2002 (A/H7N2) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI166614 A/avian/New York/Sg-00349/2000 (A/H7N2) segment 3 (PA) 3844.0 0.000000e+00 2114/2131 (99%) EPI168865 A/chicken/New Jersey/Sg-00392/2002 (A/H7N2) segment 3 (PA) 3840.3 0.000000e+00 2127/2151 (98%) EPI159041 A/unknown/NY/120485-5/2001 (A/H7N2) segment 3 (PA) 3840.3 0.000000e+00 2127/2151 (98%) EPI236956 A/avian/New York/Sg-00377/2001 (A/H5N2) segment 3 (PA) 3834.8 0.000000e+00 2127/2152 (98%) EPI235953 A/guinea hen/MA/14801-11/2002 (A/H7N2) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%) EPI168857 A/guinea fowl/Massachusetts/Sg-00390/2002 (A/H7N2) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%) EPI120348 A/avian/NY/118353-1/2001 (A/H7N2) segment 3 (PA) 3834.8 0.000000e+00 2127/2152 (98%) EPI169617 A/chicken/NY/21586-8/99 (A/H7N2) segment 3 (PA) 3829.2 0.000000e+00 2126/2152 (98%) EPI159067 A/turkey/VA/158512/2002 (A/H7N2) segment 3 (PA) 3829.2 0.000000e+00 2125/2151 (98%) EPI188101 A/avian/New York/Sg-00338/1999 (A/H7N2) segment 3 (PA) 3820.0 0.000000e+00 2121/2147 (98%) EPI307292 A/turkey/VA/SEP-67/2002 (A/H7N2) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%) EPI168887 A/avian/New York/Sg-00398/2002 (A/H7N2) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%) EPI168883 A/avian/New York/Sg-00397/2002 (A/H7N2) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%) EPI168879 A/avian/New York/Sg-00396/2002 (A/H7N2) segment 3 (PA) 3818.1 0.000000e+00 2123/2151 (98%) EPI168837 A/avian/New York/Sg-00385/2001 (A/H7N2) segment 3 (PA) 3818.1 0.000000e+00 2115/2139 (98%) EPI166561 A/duck/New Jersey/Sg-00335/1999 (A/H7N2) segment 3 (PA) 3812.6 0.000000e+00 2109/2131 (98%) EPI162358 A/turkey/VA/55/2002 (A/H7N2) segment 3 (PA) 3812.6 0.000000e+00 2122/2151 (98%) EPI166565 A/chicken/New Jersey/Sg-00336/1999 (A/H7N2) segment 3 (PA) 3807.1 0.000000e+00 2108/2131 (98%) EPI158414 A/Chicken/New Jersey/30739-6/00 (A/H7N2) segment 3 (PA) 3807.1 0.000000e+00 2123/2153 (98%) EPI166550 A/avian/New York/Sg-00331/1999 (A/H7N2) segment 3 (PA) 3805.2 0.000000e+00 2107/2130 (98%) EPI166539 A/avian/New York/Sg-00328/1999 (A/H7N2) segment 3 (PA) 3805.2 0.000000e+00 2107/2130 (98%) EPI166554 A/chicken/New Jersey/Sg-00333/1999 (A/H7N2) segment 3 (PA) 3801.5 0.000000e+00 2107/2131 (98%) EPI168919 A/avian/New York/Sg-00406/2003 (A/H7N2) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%) EPI168899 A/avian/New York/Sg-00401/2003 (A/H7N2) segment 3 (PA) 3796.0 0.000000e+00 2119/2151 (98%) EPI168907 A/avian/New York/Sg-00403/2003 (A/H7N2) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI122291 A/chicken/NY/30749-3/00 (A/H7N2) segment 3 (PA) 3784.9 0.000000e+00 2118/2152 (98%) EPI235150 A/environment/NY/241365-18/2003 (A/H7N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI168963 A/avian/New York/Sg-00417/2003 (A/H7N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI168915 A/avian/New York/Sg-00405/2003 (A/H7N2) segment 3 (PA) 3779.4 0.000000e+00 2116/2151 (98%) EPI166587 A/quail/New Jersey/Sg-00342/2000 (A/H7N2) segment 3 (PA) 3779.4 0.000000e+00 2103/2131 (98%) EPI168955 A/avian/New York/Sg-00415/2003 (A/H7N2) segment 3 (PA) 3775.7 0.000000e+00 2115/2151 (98%) EPI168923 A/avian/New York/Sg-00407/2003 (A/H7N2) segment 3 (PA) 3775.7 0.000000e+00 2116/2152 (98%) EPI168959 A/chicken/New York/Sg-00416/2003 (A/H7N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI168943 A/avian/New York/Sg-00412/2003 (A/H7N2) segment 3 (PA) 3773.8 0.000000e+00 2116/2152 (98%) EPI168911 A/avian/New York/Sg-00404/2003 (A/H7N2) segment 3 (PA) 3773.8 0.000000e+00 2115/2151 (98%) EPI166579 A/chicken/New Jersey/Sg-00340/2000 (A/H7N2) segment 3 (PA) 3773.8 0.000000e+00 2103/2132 (98%) EPI166576 A/avian/New York/Sg-00339/2000 (A/H7N2) segment 3 (PA) 3773.8 0.000000e+00 2102/2131 (98%) EPI166569 A/avian/New York/Sg-00337/1999 (A/H7N2) segment 3 (PA) 3773.8 0.000000e+00 2094/2119 (98%) EPI168798 A/avian/New York/Sg-00375/2001 (A/H7N2) segment 3 (PA) 3770.1 0.000000e+00 2115/2152 (98%) EPI168935 A/avian/New York/Sg-00410/2003 (A/H7N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI168903 A/avian/New York/Sg-00402/2003 (A/H7N2) segment 3 (PA) 3768.3 0.000000e+00 2114/2151 (98%) EPI168951 A/avian/New York/Sg-00414/2003 (A/H7N2) segment 3 (PA) 3762.7 0.000000e+00 2113/2151 (98%) EPI168895 A/avian/New York/Sg-00400/2003 (A/H7N2) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%) EPI168891 A/avian/New York/Sg-00399/2003 (A/H7N2) segment 3 (PA) 3762.7 0.000000e+00 2113/2151 (98%) EPI159056 A/chicken/FL/90348-4/2001 (A/H7N2) segment 3 (PA) 3762.7 0.000000e+00 2115/2153 (98%) EPI168734 A/avian/New York/Sg-00357/2001 (A/H7N2) segment 3 (PA) 3759.1 0.000000e+00 2113/2152 (98%) EPI169017 A/chicken/New Jersey/Sg-00431/2004 (A/H7N2) segment 3 (PA) 3751.7 0.000000e+00 2112/2152 (98%) EPI169013 A/avian/New York/Sg-00430/2004 (A/H7N3) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI169009 A/chicken/New Jersey/Sg-00429/2004 (A/H7N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI168947 A/avian/New York/Sg-00413/2003 (A/H7N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI168927 A/avian/New York/Sg-00408/2003 (A/H7N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI159017 A/environment/NY/260422-10/2003 (A/H7N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI159009 A/chicken/CT/260413-2/2003 (A/H7N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI166583 A/chicken/New Jersey/Sg-00341/2000 (A/H7N2) segment 3 (PA) 3749.8 0.000000e+00 2097/2130 (98%) EPI168986 A/environment/New Jersey/Sg-00423/2004 (A/H7N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%) EPI168939 A/avian/New York/Sg-00411/2003 (A/H7N2) segment 3 (PA) 3746.1 0.000000e+00 2108/2151 (98%) EPI158847 A/chicken/NJ/294508-12/2004 (A/H7N2) segment 3 (PA) 3746.1 0.000000e+00 2110/2151 (98%) EPI169033 A/chicken/New Jersey/Sg-00435/2004 (A/H7N2) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%) EPI168978 A/chicken/New Jersey/Sg-00421/2004 (A/H7N2) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%) EPI168970 A/avian/New York/Sg-00419/2003 (A/H7N2) segment 3 (PA) 3736.9 0.000000e+00 2109/2152 (98%) EPI243853 A/avian/New York/Sg-00428/2004 (A/H7N2) segment 3 (PA) 3735.0 0.000000e+00 2108/2151 (98%) EPI307279 A/chicken/MD/MinhMa/2004 (A/H7N2) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%) EPI162445 A/Chicken/New York/3202-7/96 (A/H7N2) segment 3 (PA) 3729.5 0.000000e+00 2110/2154 (97%) EPI169029 A/chicken/New Jersey/Sg-00434/2004 (A/H7N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%) EPI169021 A/chicken/New York/Sg-00432/2004 (A/H7N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%) EPI158569 A/chicken/PA/7777-1/1997 (A/H7N2) segment 3 (PA) 3724.0 0.000000e+00 2109/2154 (97%) EPI169056 A/chicken/New Jersey/Sg-00441/2005 (A/H7N2) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%) EPI158544 A/chicken/PA/149092-1/02 (A/H7N2) segment 3 (PA) 3712.9 0.000000e+00 2107/2154 (97%) EPI164935 A/unknown/New York/11675/2005 (A/H7N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI154163 A/New York/107/2003 (A/H7N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI152862 A/chicken/New York/22067-7/2005 (A/H7N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI68420 A/environment/New York/22067-3/2005 (A/H7N2) segment 3 (PA) 3707.3 0.000000e+00 2104/2152 (97%) EPI169025 A/chicken/New York/Sg-00433/2004 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2103/2152 (97%) EPI160806 A/environment/New York/31621-5/2005 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI158554 A/chicken/PA/11767/1997 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2105/2154 (97%) EPI156582 A/environment/New York/31621-2/2005 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2102/2151 (97%) EPI152870 A/chicken/New York/22067-12/2005 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2104/2153 (97%) EPI141417 A/environment/New York/22067-4/2005 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2104/2153 (97%) EPI131837 A/environment/New York/22067-2/2005 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2104/2153 (97%) EPI131818 A/environment/New York/22067-1/2005 (A/H7N2) segment 3 (PA) 3701.8 0.000000e+00 2104/2153 (97%) EPI235158 A/environmental/NY/268925-10/2003 (A/H7N2) segment 3 (PA) 3700.0 0.000000e+00 2086/2127 (98%) EPI227007 A/chicken/New York/11678-5/2005 (A/H7N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI169049 A/chicken/New Jersey/Sg-00439/2005 (A/H7N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%) EPI167331 A/environment/New York/31621-1/2005 (A/H7N2) segment 3 (PA) 3696.3 0.000000e+00 2101/2151 (97%)
  18. niman
    Align Segment-ID Name Score E-Value Identity EPI125546 A/chicken/PA/143586/01 (A/H7N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI42783 A/chicken/Pennsylvania/143586/2002 (A/H7N2) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI159048 A/unknown/NY/ 117932-11/2001 (A/H7N2) segment 2 (PB1) 4148.7 0.000000e+00 2264/2274 (99%) EPI307293 A/turkey/VA/SEP-67/2002 (A/H7N2) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI162359 A/turkey/VA/55/2002 (A/H7N2) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI159068 A/turkey/VA/158512/2002 (A/H7N2) segment 2 (PB1) 4145.0 0.000000e+00 2264/2274 (99%) EPI168797 A/avian/New York/Sg-00375/2001 (A/H7N2) segment 2 (PB1) 4143.2 0.000000e+00 2255/2261 (99%) EPI168820 A/chicken/New York/Sg-00381/2001 (A/H7N2) segment 2 (PB1) 4135.8 0.000000e+00 2255/2263 (99%) EPI168840 A/chicken/New York/Sg-00386/2001 (A/H7N2) segment 2 (PB1) 4130.2 0.000000e+00 2254/2263 (99%) EPI235954 A/guinea hen/MA/14801-11/2002 (A/H7N2) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI168856 A/guinea fowl/Massachusetts/Sg-00390/2002 (A/H7N2) segment 2 (PB1) 4113.6 0.000000e+00 2251/2263 (99%) EPI168860 A/guinea fowl/New Jersey/Sg-00391/2002 (A/H7N2) segment 2 (PB1) 4091.4 0.000000e+00 2247/2263 (99%) EPI168713 A/chicken/New York/Sg-00352/2000 (A/H7N2) segment 2 (PB1) 4087.8 0.000000e+00 2247/2264 (99%) EPI168761 A/avian/New York/Sg-00365/2001 (A/H7N2) segment 2 (PB1) 4085.9 0.000000e+00 2246/2263 (99%) EPI166613 A/avian/New York/Sg-00349/2000 (A/H7N2) segment 2 (PB1) 4084.1 0.000000e+00 2245/2263 (99%) EPI168721 A/avian/New York/Sg-00354/2000 (A/H7N2) segment 2 (PB1) 4082.2 0.000000e+00 2244/2261 (99%) EPI168864 A/chicken/New Jersey/Sg-00392/2002 (A/H7N2) segment 2 (PB1) 4080.4 0.000000e+00 2245/2263 (99%) EPI168717 A/avian/New York/Sg-00353/2000 (A/H7N2) segment 2 (PB1) 4076.7 0.000000e+00 2245/2264 (99%) EPI168749 A/avian/New York/Sg-00362/2001 (A/H7N2) segment 2 (PB1) 4074.8 0.000000e+00 2244/2263 (99%) EPI120350 A/avian/NY/118353-1/2001 (A/H7N2) segment 2 (PB1) 4073.0 0.000000e+00 2251/2274 (98%) EPI168868 A/environment/New Jersey/Sg-00393/2002 (A/H7N2) segment 2 (PB1) 4069.3 0.000000e+00 2243/2263 (99%) EPI168737 A/avian/New York/Sg-00358/2001 (A/H7N2) segment 2 (PB1) 4065.6 0.000000e+00 2243/2264 (99%) EPI166609 A/avian/New York/Sg-00348/2000 (A/H7N2) segment 2 (PB1) 4065.6 0.000000e+00 2241/2262 (99%) EPI122310 A/chicken/NJ/118878-5/01 (A/H7N2) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI159040 A/unknown/NY/120485-5/2001 (A/H7N2) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI168801 A/avian/New York/Sg-00376/2001 (A/H7N2) segment 2 (PB1) 4052.7 0.000000e+00 2240/2263 (98%) EPI168832 A/chicken/New York/Sg-00384/2001 (A/H7N2) segment 2 (PB1) 4047.1 0.000000e+00 2239/2263 (98%) EPI168816 A/chicken/New Jersey/Sg-00380/2001 (A/H7N2) segment 2 (PB1) 4047.1 0.000000e+00 2239/2263 (98%) EPI168812 A/chicken/New Jersey/Sg-00379/2001 (A/H7N2) segment 2 (PB1) 4045.3 0.000000e+00 2238/2262 (98%) EPI169618 A/chicken/NY/21586-8/99 (A/H7N2) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI166560 A/duck/New Jersey/Sg-00335/1999 (A/H7N2) segment 2 (PB1) 4037.9 0.000000e+00 2236/2261 (98%) EPI168836 A/avian/New York/Sg-00385/2001 (A/H7N2) segment 2 (PB1) 4036.0 0.000000e+00 2237/2263 (98%) EPI166553 A/chicken/New Jersey/Sg-00333/1999 (A/H7N2) segment 2 (PB1) 4032.4 0.000000e+00 2235/2261 (98%) EPI166549 A/avian/New York/Sg-00331/1999 (A/H7N2) segment 2 (PB1) 4032.4 0.000000e+00 2235/2261 (98%) EPI158413 A/Chicken/New Jersey/30739-6/00 (A/H7N2) segment 2 (PB1) 4023.1 0.000000e+00 2242/2274 (98%) EPI166568 A/avian/New York/Sg-00337/1999 (A/H7N2) segment 2 (PB1) 4015.7 0.000000e+00 2232/2261 (98%) EPI166538 A/avian/New York/Sg-00328/1999 (A/H7N2) segment 2 (PB1) 4010.2 0.000000e+00 2223/2249 (98%) EPI188102 A/chicken/New Jersey/Sg-00340/2000 (A/H7N2) segment 2 (PB1) 3999.1 0.000000e+00 2229/2261 (98%) EPI168886 A/avian/New York/Sg-00398/2002 (A/H7N2) segment 2 (PB1) 3997.3 0.000000e+00 2230/2263 (98%) EPI168882 A/avian/New York/Sg-00397/2002 (A/H7N2) segment 2 (PB1) 3997.3 0.000000e+00 2230/2263 (98%) EPI168878 A/avian/New York/Sg-00396/2002 (A/H7N2) segment 2 (PB1) 3997.3 0.000000e+00 2230/2263 (98%) EPI166452 A/chicken/New York/Sg-00306/1998 (A/H7N2) segment 2 (PB1) 3988.0 0.000000e+00 2227/2261 (98%) EPI243242 A/avian/New York/Sg-00338/1999 (A/H7N2) segment 2 (PB1) 3984.3 0.000000e+00 2219/2250 (98%) EPI166448 A/chicken/New York/Sg-00305/1998 (A/H7N2) segment 2 (PB1) 3954.8 0.000000e+00 2221/2261 (98%) EPI159055 A/chicken/FL/90348-4/2001 (A/H7N2) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%) EPI166575 A/avian/New York/Sg-00339/2000 (A/H7N2) segment 2 (PB1) 3910.5 0.000000e+00 2205/2249 (98%) EPI162446 A/Chicken/New York/3202-7/96 (A/H7N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI159024 A/chicken/PA/19241/1997 (A/H7N2) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI166425 A/chicken/New York/Sg-00298/1997 (A/H7N2) segment 2 (PB1) 3884.6 0.000000e+00 2208/2262 (97%) EPI158568 A/chicken/PA/7777-1/1997 (A/H7N2) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI122326 A/Turkey/Pennsylvania/7975/97 (A/H7N2) segment 2 (PB1) 3879.1 0.000000e+00 2216/2274 (97%) EPI307274 A/chicken/PA/9801289/1998 (A/H7N2) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI158553 A/chicken/PA/11767/1997 (A/H7N2) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI166444 A/chicken/New Jersey/Sg-00304/1997 (A/H7N2) segment 2 (PB1) 3862.5 0.000000e+00 2204/2261 (97%) EPI158543 A/chicken/PA/149092-1/02 (A/H7N2) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI370644 A/chicken/New Jersey/13839-17/1995 (A/H2N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI158429 A/Chicken/Pennsylvania/13552-1/98 (A/H7N2) segment 2 (PB1) 3856.9 0.000000e+00 2212/2274 (97%) EPI370580 A/guinea fowl/New Jersey/6322-8/1995 (A/H0) segment 2 (PB1) 3851.4 0.000000e+00 2211/2274 (97%) EPI166376 A/chicken/New York/Sg-00285/1996 (A/H7N2) segment 2 (PB1) 3849.5 0.000000e+00 2202/2261 (97%) EPI370612 A/guinea fowl/New Jersey/7290-19/1994 (A/H2N2) segment 2 (PB1) 3845.8 0.000000e+00 2210/2274 (97%) EPI166511 A/environment/Pennsylvania/Sg-00321/1998 (A/H7N2) segment 2 (PB1) 3844.0 0.000000e+00 2201/2261 (97%) EPI166503 A/duck/New Jersey/Sg-00319/1998 (A/H7N2) segment 2 (PB1) 3844.0 0.000000e+00 2193/2249 (97%) EPI370636 A/guinea fowl/New York/13824/1995 (A/H2N2) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI370492 A/duck/New Jersey/7872-27/1995 (A/H0) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI158433 A/quail/NY/13989-51/1998 (A/H7N2) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI166456 A/chicken/New York/Sg-00307/1998 (A/H7N2) segment 2 (PB1) 3838.5 0.000000e+00 2201/2262 (97%) EPI166460 A/chicken/New York/Sg-00308/1998 (A/H7N2) segment 2 (PB1) 3836.6 0.000000e+00 2198/2258 (97%) EPI370604 A/guinea fowl/New York/4449-12/1994 (A/H2N2) segment 2 (PB1) 3834.8 0.000000e+00 2208/2274 (97%) EPI166472 A/chicken/New Jersey/Sg-00311/1998 (A/H7N2) segment 2 (PB1) 3834.8 0.000000e+00 2200/2262 (97%) EPI166507 A/guinea fowl/New Jersey/Sg-00320/1998 (A/H7N2) segment 2 (PB1) 3832.9 0.000000e+00 2191/2249 (97%) EPI370596 A/chicken/New Jersey/16264-16/1995 (A/H2N2) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%) EPI166384 A/turkey/New Jersey/Sg-00287/1996 (A/H7N2) segment 2 (PB1) 3829.2 0.000000e+00 2198/2261 (97%) EPI122317 A/Chicken/New York/6777-3/97 (A/H7N2) segment 2 (PB1) 3829.2 0.000000e+00 2208/2275 (97%) EPI42630 A/guinea fowl/New York/20221-11/1995 (A/H2N2) segment 2 (PB1) 3829.2 0.000000e+00 2207/2274 (97%) EPI166464 A/guinea fowl/New York/Sg-00309/1998 (A/H7N2) segment 2 (PB1) 3827.4 0.000000e+00 2199/2262 (97%) EPI166484 A/chicken/New Jersey/Sg-00314/1998 (A/H7N2) segment 2 (PB1) 3825.5 0.000000e+00 2196/2261 (97%) EPI370628 A/chicken/New Jersey/10977-2/1994 (A/H2N2) segment 2 (PB1) 3823.7 0.000000e+00 2207/2275 (97%) EPI166399 A/duck/New York/Sg-00291/1996 (A/H7N2) segment 2 (PB1) 3823.7 0.000000e+00 2198/2262 (97%) EPI188074 A/duck/New Jersey/Sg-00266/1995 (A/H2N2) segment 2 (PB1) 3821.8 0.000000e+00 2199/2264 (97%) EPI166388 A/chicken/New York/Sg-00288/1996 (A/H7N2) segment 2 (PB1) 3821.8 0.000000e+00 2197/2262 (97%) EPI166480 A/chicken/New Jersey/Sg-00313/1998 (A/H7N2) segment 2 (PB1) 3820.0 0.000000e+00 2188/2248 (97%) EPI166315 A/guinea fowl/New Jersey/Sg-00265/1995 (A/H2N2) segment 2 (PB1) 3820.0 0.000000e+00 2198/2263 (97%) EPI158548 A/chicken/NY/13833-7/1995 (A/H7N2) segment 2 (PB1) 3818.1 0.000000e+00 2206/2275 (96%) EPI122333 A/Chicken/New York/4447-7/94 (A/H7N2) segment 2 (PB1) 3818.1 0.000000e+00 2206/2275 (96%) EPI166333 A/guinea fowl/New York/Sg-00272/1995 (A/H2N2) segment 2 (PB1) 3816.3 0.000000e+00 2196/2261 (97%) EPI370588 A/guinea fowl/New Jersey/14600-21/1995 (A/H2N2) segment 2 (PB1) 3812.6 0.000000e+00 2205/2275 (96%) EPI166487 A/duck/New Jersey/Sg-00315/1998 (A/H7N2) segment 2 (PB1) 3810.8 0.000000e+00 2195/2261 (97%) EPI166350 A/guinea fowl/New York/Sg-00278/1995 (A/H2N2) segment 2 (PB1) 3808.9 0.000000e+00 2196/2263 (97%) EPI166499 A/quail/New Jersey/Sg-00318/1998 (A/H7N2) segment 2 (PB1) 3807.1 0.000000e+00 2190/2254 (97%) EPI158446 A/Chicken/NJ/16224-6/99 (A/H7N2) segment 2 (PB1) 3807.1 0.000000e+00 2203/2274 (96%) EPI158425 A/Chicken/New York/13142-5/94 (A/H7N2) segment 2 (PB1) 3807.1 0.000000e+00 2205/2276 (96%) EPI42647 A/guinea fowl/New York/13820-3/1995 (A/H7N2) segment 2 (PB1) 3807.1 0.000000e+00 2204/2275 (96%) EPI239005 A/chuckar/New Jersey/Sg-00317/1998 (A/H7N2) segment 2 (PB1) 3805.2 0.000000e+00 2195/2262 (97%) EPI188086 A/chicken/New Jersey/Sg-00276/1995 (A/H2N2) segment 2 (PB1) 3805.2 0.000000e+00 2195/2262 (97%) EPI166491 A/waterfowl/New Jersey/Sg-00316/1998 (A/H7N2) segment 2 (PB1) 3805.2 0.000000e+00 2195/2262 (97%) EPI166476 A/turkey/New Jersey/Sg-00312/1998 (A/H7N2) segment 2 (PB1) 3805.2 0.000000e+00 2194/2261 (97%) EPI166468 A/duck/New York/Sg-00310/1998 (A/H7N2) segment 2 (PB1) 3803.4 0.000000e+00 2189/2254 (97%) EPI188061 A/duck/New York/Sg-00259/1994 (A/H7N2) segment 2 (PB1) 3801.5 0.000000e+00 2195/2263 (96%) EPI166320 A/chicken/New Jersey/Sg-00268/1995 (A/H2N2) segment 2 (PB1) 3801.5 0.000000e+00 2195/2263 (96%) EPI125565 A/turkey/NY/13820-3/1995 (A/H7N2) segment 2 (PB1) 3801.5 0.000000e+00 2203/2275 (96%) 3797.8 0.000000e+00 2195/2264 (96%)
  19. niman
    Align Segment-ID Name Score E-Value Identity EPI125544 A/chicken/PA/143586/01 (A/H7N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI42786 A/chicken/Pennsylvania/143586/2002 (A/H7N2) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI159047 A/unknown/NY/ 117932-11/2001 (A/H7N2) segment 1 (PB2) 4194.9 0.000000e+00 2277/2280 (99%) EPI168839 A/chicken/New York/Sg-00386/2001 (A/H7N2) segment 1 (PB2) 4181.9 0.000000e+00 2266/2267 (99%) EPI235955 A/guinea hen/MA/14801-11/2002 (A/H7N2) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI168819 A/chicken/New York/Sg-00381/2001 (A/H7N2) segment 1 (PB2) 4178.2 0.000000e+00 2266/2268 (99%) EPI159069 A/turkey/VA/158512/2002 (A/H7N2) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI168780 A/avian/New York/Sg-00371/2001 (A/H7N2) segment 1 (PB2) 4156.1 0.000000e+00 2258/2263 (99%) EPI162360 A/turkey/VA/55/2002 (A/H7N2) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI168855 A/guinea fowl/Massachusetts/Sg-00390/2002 (A/H7N2) segment 1 (PB2) 4154.2 0.000000e+00 2261/2267 (99%) EPI307294 A/turkey/VA/SEP-67/2002 (A/H7N2) segment 1 (PB2) 4148.7 0.000000e+00 2268/2279 (99%) EPI168867 A/environment/New Jersey/Sg-00393/2002 (A/H7N2) segment 1 (PB2) 4148.7 0.000000e+00 2262/2270 (99%) EPI168859 A/guinea fowl/New Jersey/Sg-00391/2002 (A/H7N2) segment 1 (PB2) 4148.7 0.000000e+00 2260/2267 (99%) EPI168796 A/avian/New York/Sg-00375/2001 (A/H7N2) segment 1 (PB2) 4145.0 0.000000e+00 2250/2253 (99%) EPI168808 A/avian/New York/Sg-00378/2001 (A/H7N2) segment 1 (PB2) 4141.3 0.000000e+00 2250/2254 (99%) EPI168863 A/chicken/New Jersey/Sg-00392/2002 (A/H7N2) segment 1 (PB2) 4133.9 0.000000e+00 2258/2268 (99%) EPI168877 A/avian/New York/Sg-00396/2002 (A/H7N2) segment 1 (PB2) 4128.4 0.000000e+00 2257/2268 (99%) EPI168881 A/avian/New York/Sg-00397/2002 (A/H7N2) segment 1 (PB2) 4119.1 0.000000e+00 2252/2263 (99%) EPI168885 A/avian/New York/Sg-00398/2002 (A/H7N2) segment 1 (PB2) 4117.3 0.000000e+00 2255/2268 (99%) EPI166600 A/avian/New York/Sg-00346/2000 (A/H7N2) segment 1 (PB2) 4117.3 0.000000e+00 2247/2256 (99%) EPI158445 A/Chicken/NJ/16224-6/99 (A/H7N2) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI168756 A/avian/New York/Sg-00364/2001 (A/H7N2) segment 1 (PB2) 4109.9 0.000000e+00 2241/2249 (99%) EPI169619 A/chicken/NY/21586-8/99 (A/H7N2) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI166596 A/avian/New York/Sg-00345/2000 (A/H7N2) segment 1 (PB2) 4080.4 0.000000e+00 2243/2260 (99%) EPI166585 A/quail/New Jersey/Sg-00342/2000 (A/H7N2) segment 1 (PB2) 4078.5 0.000000e+00 2240/2256 (99%) EPI158412 A/Chicken/New Jersey/30739-6/00 (A/H7N2) segment 1 (PB2) 4067.4 0.000000e+00 2254/2280 (98%) EPI166537 A/avian/New York/Sg-00328/1999 (A/H7N2) segment 1 (PB2) 4063.7 0.000000e+00 2234/2251 (99%) EPI168704 A/avian/New York/Sg-00350/2000 (A/H7N2) segment 1 (PB2) 4060.1 0.000000e+00 2244/2267 (98%) EPI166563 A/chicken/New Jersey/Sg-00336/1999 (A/H7N2) segment 1 (PB2) 4050.8 0.000000e+00 2229/2247 (99%) EPI166559 A/duck/New Jersey/Sg-00335/1999 (A/H7N2) segment 1 (PB2) 4050.8 0.000000e+00 2230/2249 (99%) EPI166556 A/chicken/New Jersey/Sg-00334/1999 (A/H7N2) segment 1 (PB2) 4050.8 0.000000e+00 2229/2247 (99%) EPI166552 A/chicken/New Jersey/Sg-00333/1999 (A/H7N2) segment 1 (PB2) 4050.8 0.000000e+00 2229/2247 (99%) EPI122286 A/chicken/NY/30749-3/00 (A/H7N2) segment 1 (PB2) 4050.8 0.000000e+00 2251/2280 (98%) EPI168728 A/avian/New York/Sg-00356/2001 (A/H7N2) segment 1 (PB2) 4045.3 0.000000e+00 2228/2247 (99%) EPI166567 A/avian/New York/Sg-00337/1999 (A/H7N2) segment 1 (PB2) 4045.3 0.000000e+00 2228/2247 (99%) EPI243241 A/avian/New York/Sg-00338/1999 (A/H7N2) segment 1 (PB2) 4039.7 0.000000e+00 2227/2247 (99%) EPI168740 A/avian/New York/Sg-00359/2001 (A/H7N2) segment 1 (PB2) 4037.9 0.000000e+00 2238/2264 (98%) EPI168708 A/avian/New York/Sg-00351/2000 (A/H7N2) segment 1 (PB2) 4037.9 0.000000e+00 2242/2270 (98%) EPI188104 A/avian/New York/Sg-00368/2001 (A/H7N2) segment 1 (PB2) 4034.2 0.000000e+00 2248/2280 (98%) EPI159062 A/unknown/NY/85161/2000 (A/H7N2) segment 1 (PB2) 4034.2 0.000000e+00 2248/2280 (98%) EPI166548 A/avian/New York/Sg-00331/1999 (A/H7N2) segment 1 (PB2) 4028.7 0.000000e+00 2225/2247 (99%) EPI159031 A/guinea fowl/NJ/119063-8/2001 (A/H7N2) segment 1 (PB2) 4028.7 0.000000e+00 2247/2280 (98%) EPI120353 A/avian/NY/118353-1/2001 (A/H7N2) segment 1 (PB2) 4017.6 0.000000e+00 2245/2280 (98%) EPI166612 A/avian/New York/Sg-00349/2000 (A/H7N2) segment 1 (PB2) 4013.9 0.000000e+00 2225/2251 (98%) EPI168724 A/avian/New York/Sg-00355/2000 (A/H7N2) segment 1 (PB2) 4012.0 0.000000e+00 2222/2247 (98%) EPI122308 A/chicken/NJ/118878-5/01 (A/H7N2) segment 1 (PB2) 4012.0 0.000000e+00 2244/2280 (98%) EPI168823 A/guinea fowl/New Jersey/Sg-00382/2001 (A/H7N2) segment 1 (PB2) 4008.4 0.000000e+00 2236/2269 (98%) EPI168716 A/avian/New York/Sg-00353/2000 (A/H7N2) segment 1 (PB2) 4008.4 0.000000e+00 2224/2251 (98%) EPI166608 A/avian/New York/Sg-00348/2000 (A/H7N2) segment 1 (PB2) 4008.4 0.000000e+00 2224/2251 (98%) EPI166578 A/chicken/New Jersey/Sg-00340/2000 (A/H7N2) segment 1 (PB2) 4006.5 0.000000e+00 2221/2247 (98%) EPI159039 A/unknown/NY/120485-5/2001 (A/H7N2) segment 1 (PB2) 4006.5 0.000000e+00 2244/2281 (98%) EPI166574 A/avian/New York/Sg-00339/2000 (A/H7N2) segment 1 (PB2) 4001.0 0.000000e+00 2220/2247 (98%) EPI168764 A/avian/New York/Sg-00366/2001 (A/H7N2) segment 1 (PB2) 3995.4 0.000000e+00 2219/2247 (98%) EPI168748 A/avian/New York/Sg-00362/2001 (A/H7N2) segment 1 (PB2) 3995.4 0.000000e+00 2223/2253 (98%) EPI168712 A/chicken/New York/Sg-00352/2000 (A/H7N2) segment 1 (PB2) 3995.4 0.000000e+00 2223/2253 (98%) EPI168760 A/avian/New York/Sg-00365/2001 (A/H7N2) segment 1 (PB2) 3993.6 0.000000e+00 2232/2267 (98%) EPI168768 A/avian/New York/Sg-00367/2001 (A/H7N2) segment 1 (PB2) 3991.7 0.000000e+00 2231/2266 (98%) EPI166581 A/chicken/New Jersey/Sg-00341/2000 (A/H7N2) segment 1 (PB2) 3989.9 0.000000e+00 2218/2247 (98%) EPI166451 A/chicken/New York/Sg-00306/1998 (A/H7N2) segment 1 (PB2) 3989.9 0.000000e+00 2218/2247 (98%) EPI159054 A/chicken/FL/90348-4/2001 (A/H7N2) segment 1 (PB2) 3989.9 0.000000e+00 2240/2280 (98%) EPI168800 A/avian/New York/Sg-00376/2001 (A/H7N2) segment 1 (PB2) 3988.0 0.000000e+00 2229/2264 (98%) EPI168835 A/avian/New York/Sg-00385/2001 (A/H7N2) segment 1 (PB2) 3984.3 0.000000e+00 2232/2269 (98%) EPI168720 A/avian/New York/Sg-00354/2000 (A/H7N2) segment 1 (PB2) 3984.3 0.000000e+00 2221/2253 (98%) EPI168831 A/chicken/New York/Sg-00384/2001 (A/H7N2) segment 1 (PB2) 3982.5 0.000000e+00 2230/2267 (98%) EPI166447 A/chicken/New York/Sg-00305/1998 (A/H7N2) segment 1 (PB2) 3975.1 0.000000e+00 2218/2251 (98%) EPI162447 A/Chicken/New York/3202-7/96 (A/H7N2) segment 1 (PB2) 3973.3 0.000000e+00 2237/2280 (98%) EPI168815 A/chicken/New Jersey/Sg-00380/2001 (A/H7N2) segment 1 (PB2) 3965.9 0.000000e+00 2219/2255 (98%) EPI158567 A/chicken/PA/7777-1/1997 (A/H7N2) segment 1 (PB2) 3956.6 0.000000e+00 2234/2280 (97%) EPI158552 A/chicken/PA/11767/1997 (A/H7N2) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI159023 A/chicken/PA/19241/1997 (A/H7N2) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI158557 A/chicken/RI/4328-1/1995 (A/H7N2) segment 1 (PB2) 3923.4 0.000000e+00 2229/2281 (97%) EPI122295 A/Chicken/New York/3112-1/95 (A/H7N2) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI166424 A/chicken/New York/Sg-00298/1997 (A/H7N2) segment 1 (PB2) 3916.0 0.000000e+00 2204/2246 (98%) EPI158542 A/chicken/PA/149092-1/02 (A/H7N2) segment 1 (PB2) 3912.3 0.000000e+00 2226/2280 (97%) EPI158547 A/chicken/NY/13833-7/1995 (A/H7N2) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI158432 A/quail/NY/13989-51/1998 (A/H7N2) segment 1 (PB2) 3901.2 0.000000e+00 2226/2282 (97%) EPI122324 A/Turkey/Pennsylvania/7975/97 (A/H7N2) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI166387 A/chicken/New York/Sg-00288/1996 (A/H7N2) segment 1 (PB2) 3890.2 0.000000e+00 2208/2259 (97%) EPI166379 A/duck/New Jersey/Sg-00286/1996 (A/H7N2) segment 1 (PB2) 3888.3 0.000000e+00 2207/2258 (97%) EPI166394 A/goose/New Jersey/Sg-00290/1996 (A/H7N2) segment 1 (PB2) 3886.5 0.000000e+00 2208/2260 (97%) EPI158428 A/Chicken/Pennsylvania/13552-1/98 (A/H7N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI166363 A/chicken/Rhode Island/Sg-00282/1996 (A/H7N2) segment 1 (PB2) 3882.8 0.000000e+00 2207/2259 (97%) EPI166391 A/chicken/New York/Sg-00289/1996 (A/H2N2) segment 1 (PB2) 3880.9 0.000000e+00 2207/2260 (97%) EPI166409 A/chicken/New York/Sg-00294/1996 (A/H7N2) segment 1 (PB2) 3879.1 0.000000e+00 2206/2259 (97%) EPI158562 A/chicken/NY/8030-2/1997 (A/H7N2) segment 1 (PB2) 3879.1 0.000000e+00 2220/2280 (97%) EPI166383 A/turkey/New Jersey/Sg-00287/1996 (A/H7N2) segment 1 (PB2) 3875.4 0.000000e+00 2203/2256 (97%) EPI307275 A/chicken/PA/9801289/1998 (A/H7N2) segment 1 (PB2) 3873.5 0.000000e+00 2219/2280 (97%) EPI166413 A/chicken/New Jersey/Sg-00295/1996 (A/H7N2) segment 1 (PB2) 3873.5 0.000000e+00 2205/2259 (97%) EPI166510 A/environment/Pennsylvania/Sg-00321/1998 (A/H7N2) segment 1 (PB2) 3869.9 0.000000e+00 2197/2248 (97%) EPI166467 A/duck/New York/Sg-00310/1998 (A/H7N2) segment 1 (PB2) 3868.0 0.000000e+00 2196/2247 (97%) EPI166375 A/chicken/New York/Sg-00285/1996 (A/H7N2) segment 1 (PB2) 3864.3 0.000000e+00 2198/2251 (97%) EPI166337 A/chicken/New York/Sg-00274/1995 (A/H7N2) segment 1 (PB2) 3864.3 0.000000e+00 2202/2257 (97%) EPI166398 A/duck/New York/Sg-00291/1996 (A/H7N2) segment 1 (PB2) 3862.5 0.000000e+00 2203/2259 (97%) EPI158837 A/goose/NY/8600-3/1998 (A/H7N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI158424 A/Chicken/New York/13142-5/94 (A/H7N2) segment 1 (PB2) 3862.5 0.000000e+00 2217/2280 (97%) EPI166479 A/chicken/New Jersey/Sg-00313/1998 (A/H7N2) segment 1 (PB2) 3856.9 0.000000e+00 2194/2247 (97%) EPI166459 A/chicken/New York/Sg-00308/1998 (A/H7N2) segment 1 (PB2) 3856.9 0.000000e+00 2194/2247 (97%) EPI166443 A/chicken/New Jersey/Sg-00304/1997 (A/H7N2) segment 1 (PB2) 3856.9 0.000000e+00 2194/2247 (97%) EPI166359 A/chicken/New York/Sg-00281/1996 (A/H7N2) segment 1 (PB2) 3856.9 0.000000e+00 2200/2256 (97%) EPI166463 A/guinea fowl/New York/Sg-00309/1998 (A/H7N2) segment 1 (PB2) 3845.8 0.000000e+00 2192/2247 (97%)
  20. niman
    Align Segment-ID Name Score E-Value Identity EPI18095 A/chicken/PA/143586/01 (A/H7N2) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI18140 A/turkey/VA/55/02 (A/H7N2) segment 7 (MP) 1803.5 0.000000e+00 980/982 (99%) EPI236436 A/Turkey/NC/11165/02 (A/H7N2) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI18137 A/Turkey/VA/158512/02 (A/H7N2) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI18143 A/turkey/VA/67/02 (A/H7N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI18122 A/guineafowl/MA/148081-11/02 (A/H7N2) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI159005 A/chicken/CT/260413-2/2003 (A/H7N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI18113 A/chicken/VA/32/02 (A/H7N2) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI235146 A/environment/NY/241365-18/2003 (A/H7N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI159013 A/environment/NY/260422-10/2003 (A/H7N2) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI63602 A/environment/New York/11678-4/2005 (A/H7N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI63583 A/environment/New York/11678-3/2005 (A/H7N2) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI327521 A/environment/New York/30732-5/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI227003 A/chicken/New York/11678-5/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI171062 A/environment/New York/30732-1/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI156570 A/muscovy duck/New York/30732-13/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI156562 A/chicken/New York/30732-11/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI156554 A/chicken/New York/30732-10/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI156546 A/chicken/New York/30732-9/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI156538 A/chicken/New York/30732-8/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI152954 A/quail/New York/30732-12/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI141485 A/turkey/New York/30732-7/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI141477 A/chicken/New York/30732-6/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI141469 A/environment/New York/30732-4/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI141461 A/environment/New York/30732-3/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI141453 A/environment/New York/30732-2/2005 (A/H7N2) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI307276 A/chicken/MD/MinhMa/2004 (A/H7N2) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI235154 A/environmental/NY/268925-10/2003 (A/H7N2) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI63564 A/environment/New York/11678-2/2005 (A/H7N2) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI63545 A/environment/New York/11678-1/2005 (A/H7N2) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI164979 A/environment/New York/26792-3/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI164931 A/unknown/New York/11675/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI164843 A/environment/New York/26792-4/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI160858 A/quail/New York/89641/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI160794 A/environment/New York/26792-2/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI160786 A/environment/New York/26792-1/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI160754 A/duck/New York/22067-11/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI160746 A/guinea fowl/New York/22067-10/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI160722 A/environment/New York/10196-3/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI156514 A/chicken/New York/22067-9/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI156506 A/chicken/New York/22067-8/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI156498 A/environment/New York/22067-6/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI154164 A/New York/107/2003 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI152994 A/chicken/New York/42217/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI152858 A/chicken/New York/22067-7/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI141557 A/environment/New York/10196-1/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI141421 A/environment/New York/22067-5/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI141413 A/environment/New York/22067-4/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI131827 A/environment/New York/22067-2/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI131808 A/environment/New York/22067-1/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI68410 A/environment/New York/22067-3/2005 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI18056 A/Chicken/NJ/16224-6/99 (A/H7N2) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI327535 A/chicken/New York/23164-4/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327530 A/chicken/New York/23164-8/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327517 A/environment/New York/31621-4/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327512 A/chicken/New York/31621-6/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327509 A/chicken/New York/31621-7/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327479 A/environment/New York/98616-1/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327476 A/unknown/New York/11646-7/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI227191 A/environment/New York/30720-1/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI177152 A/unknown/New York/11646-9/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI172284 A/unknown/New York/11646-8/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI172276 A/Guinea fowl/New York/98616-3/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI167391 A/unknown/New York/13479-2/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI167375 A/Guinea fowl/New York/11646-3/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI167367 A/chicken/New York/11646-2/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI167327 A/environment/New York/31621-1/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI164947 A/unknown/New York/13479-5/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI164939 A/unknown/New York/13479-3/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI164923 A/unknown/New York/11646-6/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI164907 A/Muscovy duck/New York/11646-4/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI164875 A/duck/New York/98616-5/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI160866 A/environment/New York/98616-2/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI160802 A/environment/New York/31621-5/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI158843 A/chicken/NJ/294508-12/2004 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI156602 A/chicken/New York/37982-4/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI156594 A/environment/New York/37982-2/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI156586 A/guinea fowl/New York/31621-8/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152986 A/guinea fowl/New York/37982-3/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152978 A/environment/New York/37982-1/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152970 A/chicken/New York/31621-9/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152962 A/environment/New York/31621-3/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152938 A/turkey/New York/23164-11/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152922 A/chicken/New York/23164-9/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152914 A/chicken/New York/23164-7/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152906 A/chicken/New York/23164-5/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI152890 A/environment/New York/23164-2/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI141589 A/chicken/New York/23164-6/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI141445 A/environment/New York/30720-3/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI141429 A/chukar/New York/23164-13/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI68372 A/chicken/New York/21211-1/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI63697 A/duck/New York/21211-6/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI63678 A/chicken/New York/21211-2/2005 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI18080 A/Chicken/NY/14858-12/99 (A/H7N2) segment 7 (MP) 1737.0 0.000000e+00 968/982 (98%) EPI327528 A/quail/New York/23164-12/2005 (A/H7N2) segment 7 (MP) 1735.1 0.000000e+00 967/981 (98%) EPI327503 A/environment/New York/63806-1/2005 (A/H7N2) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI327493 A/chicken/New York/63806-7/2005 (A/H7N2) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI327490 A/chicken/New York/79672/2005 (A/H7N2) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI227583 A/unknown/New York/98616-6/2006 (A/H7N2) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%) EPI177160 A/unknown/New York/13479-4/2005 (A/H7N2) segment 7 (MP) 1731.4 0.000000e+00 967/982 (98%)
  21. niman
    Align Segment-ID Name Score E-Value Identity EPI42779 A/chicken/Pennsylvania/143586/2002 (A/H7N2) segment 6 (NA) 2545.8 0.000000e+00 1378/1378 (100%) EPI18327 A/chicken/PA/143586/01 (A/H7N2) segment 6 (NA) 2545.8 0.000000e+00 1378/1378 (100%) EPI236438 A/Turkey/NC/11165/O2 (A/H7N2) segment 6 (NA) 2529.2 0.000000e+00 1375/1378 (99%) EPI18365 A/Turkey/VA/158512/02 (A/H7N2) segment 6 (NA) 2529.2 0.000000e+00 1375/1378 (99%) EPI18339 A/chicken/VA/32/02 (A/H7N2) segment 6 (NA) 2523.6 0.000000e+00 1374/1378 (99%) EPI18363 A/turkey/VA/67/02 (A/H7N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%) EPI18359 A/turkey/VA/55/02 (A/H7N2) segment 6 (NA) 2518.1 0.000000e+00 1373/1378 (99%) EPI234181 A/avian/New York/Sg-00396/2002 (A/H7N2) segment 6 (NA) 2499.6 0.000000e+00 1357/1359 (99%) EPI159012 A/environment/NY/260422-10/2003 (A/H7N2) segment 6 (NA) 2495.9 0.000000e+00 1369/1378 (99%) EPI234183 A/avian/New York/Sg-00398/2002 (A/H7N2) segment 6 (NA) 2490.4 0.000000e+00 1352/1354 (99%) EPI235147 A/environment/NY/241365-18/2003 (A/H7N2) segment 6 (NA) 2484.9 0.000000e+00 1367/1378 (99%) EPI159036 A/unknown/NY/120485-5/2001 (A/H7N2) segment 6 (NA) 2484.9 0.000000e+00 1367/1378 (99%) EPI159004 A/chicken/CT/260413-2/2003 (A/H7N2) segment 6 (NA) 2484.9 0.000000e+00 1367/1378 (99%) EPI18361 A/turkey/VA/66/02 (A/H7N2) segment 6 (NA) 2484.9 0.000000e+00 1367/1378 (99%) EPI234182 A/avian/New York/Sg-00397/2002 (A/H7N2) segment 6 (NA) 2483.0 0.000000e+00 1350/1353 (99%) EPI177161 A/unknown/New York/13479-4/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI167392 A/unknown/New York/13479-2/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI167384 A/unknown/New York/13479-1/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI164980 A/environment/New York/26792-3/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI164948 A/unknown/New York/13479-5/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI164940 A/unknown/New York/13479-3/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI160787 A/environment/New York/26792-1/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI156595 A/environment/New York/37982-2/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI152979 A/environment/New York/37982-1/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI141582 A/guinea fowl/New York/10196-7/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI141566 A/environment/New York/10196-2/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI63700 A/duck/New York/21211-6/2005 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI18281 A/avian/NY/81746-5/00 (A/H7N2) segment 6 (NA) 2479.3 0.000000e+00 1366/1378 (99%) EPI68375 A/chicken/New York/21211-1/2005 (A/H7N2) segment 6 (NA) 2477.5 0.000000e+00 1365/1377 (99%) EPI63681 A/chicken/New York/21211-2/2005 (A/H7N2) segment 6 (NA) 2477.5 0.000000e+00 1365/1377 (99%) EPI152995 A/chicken/New York/42217/2005 (A/H7N2) segment 6 (NA) 2475.6 0.000000e+00 1365/1378 (99%) EPI164844 A/environment/New York/26792-4/2005 (A/H7N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%) EPI160795 A/environment/New York/26792-2/2005 (A/H7N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%) EPI160723 A/environment/New York/10196-3/2005 (A/H7N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%) EPI152987 A/guinea fowl/New York/37982-3/2005 (A/H7N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%) EPI68394 A/chukar/New York/21211-7/2005 (A/H7N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%) EPI18285 A/chicken/NJ/118878-5/01 (A/H7N2) segment 6 (NA) 2473.8 0.000000e+00 1365/1378 (99%) EPI156603 A/chicken/New York/37982-4/2005 (A/H7N2) segment 6 (NA) 2470.1 0.000000e+00 1364/1378 (98%) EPI327489 A/chicken/New York/79672/2005 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI235155 A/environmental/NY/268925-10/2003 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI234194 A/avian/New York/Sg-00409/2003 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1346/1351 (99%) EPI164892 A/Guinea fowl/New York/101276-1/2005 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI160739 A/chicken/New York/10196-5/2005 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI160731 A/chicken/New York/10196-4/2005 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI159028 A/guinea fowl/NJ/119063-8/2001 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI158842 A/chicken/NJ/294508-12/2004 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI141616 A/New York/107/2003 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI141574 A/chicken/New York/10196-6/2005 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI141558 A/environment/New York/10196-1/2005 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI18341 A/guineafowl/MA/148081/02 (A/H7N2) segment 6 (NA) 2468.2 0.000000e+00 1364/1378 (98%) EPI234188 A/avian/New York/Sg-00403/2003 (A/H7N2) segment 6 (NA) 2466.4 0.000000e+00 1351/1359 (99%) EPI172277 A/Guinea fowl/New York/98616-3/2005 (A/H7N2) segment 6 (NA) 2464.6 0.000000e+00 1362/1376 (98%) EPI18305 A/Chicken/NY/14858-12/99 (A/H7N2) segment 6 (NA) 2462.7 0.000000e+00 1363/1378 (98%) EPI18283 A/Chicken/NJ/118555-2/01 (A/H7N2) segment 6 (NA) 2462.7 0.000000e+00 1363/1378 (98%) EPI18277 A/avian/NY/118353-1/2001 (A/H7N2) segment 6 (NA) 2462.7 0.000000e+00 1363/1378 (98%) EPI227584 A/unknown/New York/98616-6/2006 (A/H7N2) segment 6 (NA) 2459.0 0.000000e+00 1361/1376 (98%) EPI234205 A/avian/New York/Sg-00420/2003 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1344/1351 (99%) EPI234184 A/avian/New York/Sg-00399/2003 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1344/1351 (99%) EPI234138 A/avian/New York/Sg-00353/2000 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1344/1351 (99%) EPI152867 A/chicken/New York/22067-12/2005 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1362/1378 (98%) EPI152859 A/chicken/New York/22067-7/2005 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1362/1378 (98%) EPI141414 A/environment/New York/22067-4/2005 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1362/1378 (98%) EPI131830 A/environment/New York/22067-2/2005 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1362/1378 (98%) EPI131811 A/environment/New York/22067-1/2005 (A/H7N2) segment 6 (NA) 2457.2 0.000000e+00 1362/1378 (98%) EPI234185 A/avian/New York/Sg-00400/2003 (A/H7N2) segment 6 (NA) 2453.5 0.000000e+00 1344/1352 (99%) EPI164876 A/duck/New York/98616-5/2005 (A/H7N2) segment 6 (NA) 2453.5 0.000000e+00 1360/1376 (98%) EPI164868 A/duck/New York/98616-4/2005 (A/H7N2) segment 6 (NA) 2453.5 0.000000e+00 1360/1376 (98%) EPI327539 A/environment/New York/641/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI234200 A/avian/New York/Sg-00415/2003 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1343/1351 (99%) EPI234199 A/avian/New York/Sg-00414/2003 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1343/1351 (99%) EPI234193 A/avian/New York/Sg-00408/2003 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1343/1351 (99%) EPI234190 A/avian/New York/Sg-00405/2003 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1343/1351 (99%) EPI234186 A/avian/New York/Sg-00401/2003 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1343/1351 (99%) EPI160755 A/duck/New York/22067-11/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI160747 A/guinea fowl/New York/22067-10/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI156515 A/chicken/New York/22067-9/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI156507 A/chicken/New York/22067-8/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI156499 A/environment/New York/22067-6/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI141422 A/environment/New York/22067-5/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI131773 A/chicken/New York/16326-4/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI76972 A/environment/New York/16326-2/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI68413 A/environment/New York/22067-3/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI63624 A/environment/New York/16326-1/2005 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI18279 A/avian/NY/76247-3/00 (A/H7N2) segment 6 (NA) 2451.6 0.000000e+00 1361/1378 (98%) EPI234170 A/avian/New York/Sg-00385/2001 (A/H7N2) segment 6 (NA) 2449.8 0.000000e+00 1348/1359 (99%) EPI228455 A/chicken/DE/HOBO/2004 (A/H7N2) segment 6 (NA) 2449.8 0.000000e+00 1350/1362 (99%) EPI160867 A/environment/New York/98616-2/2005 (A/H7N2) segment 6 (NA) 2447.9 0.000000e+00 1359/1376 (98%) EPI327527 A/quail/New York/23164-12/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI234202 A/avian/New York/Sg-00417/2003 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1342/1351 (99%) EPI234192 A/avian/New York/Sg-00407/2003 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1342/1351 (99%) EPI234189 A/avian/New York/Sg-00404/2003 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1342/1351 (99%) EPI234137 A/chicken/New York/Sg-00352/2000 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1342/1351 (99%) EPI164932 A/unknown/New York/11675/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI152939 A/turkey/New York/23164-11/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI152915 A/chicken/New York/23164-7/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI152907 A/chicken/New York/23164-5/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI152891 A/environment/New York/23164-2/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI141606 A/chicken/New York/23165-7/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI141590 A/chicken/New York/23164-6/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%) EPI141438 A/chicken/New York/23165-6/2005 (A/H7N2) segment 6 (NA) 2446.1 0.000000e+00 1360/1378 (98%)
  22. niman
    Align Segment-ID Name Score E-Value Identity EPI42777 A/chicken/Pennsylvania/143586/2002 (A/H7N2) segment 4 (HA) 3064.7 0.000000e+00 1659/1659 (100%) EPI159070 A/turkey/VA/158512/2002 (A/H7N2) segment 4 (HA) 3048.1 0.000000e+00 1656/1659 (99%) EPI159046 A/unknown/NY/ 117932-11/2001 (A/H7N2) segment 4 (HA) 3042.6 0.000000e+00 1655/1659 (99%) EPI18007 A/turkey/VA/55/02 (A/H7N2) segment 4 (HA) 3042.6 0.000000e+00 1655/1659 (99%) EPI17981 A/chicken/PA/143586/01 (A/H7N2) segment 4 (HA) 3042.6 0.000000e+00 1649/1650 (99%) EPI17947 A/avian/NY/7729-6/00 (A/H7N2) segment 4 (HA) 3037.0 0.000000e+00 1654/1659 (99%) EPI290480 A/chicken/NY/119055-7/2001 (A/H7N2) segment 4 (HA) 3031.5 0.000000e+00 1653/1659 (99%) EPI236435 A/Turkey/NC/11165/02_ (A/H7N2) segment 4 (HA) 3031.5 0.000000e+00 1653/1659 (99%) EPI18009 A/turkey/VA/66/02 (A/H7N2) segment 4 (HA) 3031.5 0.000000e+00 1653/1659 (99%) EPI17963 A/chicken/NY/119055-7/01 (A/H7N2) segment 4 (HA) 3031.5 0.000000e+00 1653/1659 (99%) EPI17995 A/chicken/VA/32/02 (A/H7N2) segment 4 (HA) 3025.9 0.000000e+00 1652/1659 (99%) EPI168842 A/chicken/New York/Sg-00386/2001 (A/H7N2) segment 4 (HA) 3020.4 0.000000e+00 1643/1647 (99%) EPI235145 A/environment/NY/241365-18/2003 (A/H7N2) segment 4 (HA) 3014.9 0.000000e+00 1650/1659 (99%) EPI168822 A/chicken/New York/Sg-00381/2001 (A/H7N2) segment 4 (HA) 3014.9 0.000000e+00 1642/1647 (99%) EPI168783 A/avian/New York/Sg-00371/2001 (A/H7N2) segment 4 (HA) 3014.9 0.000000e+00 1642/1647 (99%) EPI18011 A/turkey/VA/67/02 (A/H7N2) segment 4 (HA) 3014.9 0.000000e+00 1650/1659 (99%) EPI17959 A/chicken/NJ/608/02 (A/H7N2) segment 4 (HA) 3014.9 0.000000e+00 1650/1659 (99%) EPI168870 A/environment/New Jersey/Sg-00393/2002 (A/H7N2) segment 4 (HA) 3009.3 0.000000e+00 1641/1647 (99%) EPI168755 A/avian/New York/Sg-00363/2001 (A/H7N2) segment 4 (HA) 3007.5 0.000000e+00 1638/1643 (99%) EPI168799 A/avian/New York/Sg-00375/2001 (A/H7N2) segment 4 (HA) 3003.8 0.000000e+00 1634/1638 (99%) EPI168779 A/avian/New York/Sg-00370/2001 (A/H7N2) segment 4 (HA) 3003.8 0.000000e+00 1638/1644 (99%) EPI168896 A/avian/New York/Sg-00400/2003 (A/H7N2) segment 4 (HA) 3000.1 0.000000e+00 1639/1647 (99%) EPI168862 A/guinea fowl/New Jersey/Sg-00391/2002 (A/H7N2) segment 4 (HA) 3000.1 0.000000e+00 1638/1645 (99%) EPI168920 A/avian/New York/Sg-00406/2003 (A/H7N2) segment 4 (HA) 2994.5 0.000000e+00 1635/1642 (99%) EPI168952 A/avian/New York/Sg-00414/2003 (A/H7N2) segment 4 (HA) 2992.7 0.000000e+00 1638/1647 (99%) EPI168948 A/avian/New York/Sg-00413/2003 (A/H7N2) segment 4 (HA) 2992.7 0.000000e+00 1638/1647 (99%) EPI168900 A/avian/New York/Sg-00401/2003 (A/H7N2) segment 4 (HA) 2992.7 0.000000e+00 1638/1647 (99%) EPI168908 A/avian/New York/Sg-00403/2003 (A/H7N2) segment 4 (HA) 2990.8 0.000000e+00 1636/1644 (99%) EPI168904 A/avian/New York/Sg-00402/2003 (A/H7N2) segment 4 (HA) 2989.0 0.000000e+00 1634/1642 (99%) EPI168866 A/chicken/New Jersey/Sg-00392/2002 (A/H7N2) segment 4 (HA) 2989.0 0.000000e+00 1636/1645 (99%) EPI235153 A/environmental/NY/268925-10/2003 (A/H7N2) segment 4 (HA) 2987.2 0.000000e+00 1645/1659 (99%) EPI168944 A/avian/New York/Sg-00412/2003 (A/H7N2) segment 4 (HA) 2983.5 0.000000e+00 1633/1642 (99%) EPI168928 A/avian/New York/Sg-00408/2003 (A/H7N2) segment 4 (HA) 2983.5 0.000000e+00 1633/1642 (99%) EPI168892 A/avian/New York/Sg-00399/2003 (A/H7N2) segment 4 (HA) 2981.6 0.000000e+00 1634/1644 (99%) EPI158444 A/Chicken/NJ/16224-6/99 (A/H7N2) segment 4 (HA) 2981.6 0.000000e+00 1644/1659 (99%) EPI168960 A/chicken/New York/Sg-00416/2003 (A/H7N2) segment 4 (HA) 2976.1 0.000000e+00 1635/1647 (99%) EPI168956 A/avian/New York/Sg-00415/2003 (A/H7N2) segment 4 (HA) 2976.1 0.000000e+00 1635/1647 (99%) EPI17997 A/Chicken/NY/14858-12/99 (A/H7N2) segment 4 (HA) 2976.1 0.000000e+00 1643/1659 (99%) EPI168940 A/avian/New York/Sg-00411/2003 (A/H7N2) segment 4 (HA) 2974.2 0.000000e+00 1630/1642 (99%) EPI168912 A/avian/New York/Sg-00404/2003 (A/H7N2) segment 4 (HA) 2974.2 0.000000e+00 1631/1642 (99%) EPI168924 A/avian/New York/Sg-00407/2003 (A/H7N2) segment 4 (HA) 2972.4 0.000000e+00 1631/1642 (99%) EPI168916 A/avian/New York/Sg-00405/2003 (A/H7N2) segment 4 (HA) 2970.5 0.000000e+00 1630/1641 (99%) EPI18015 A/Chicken/New Jersey/20621/99 (A/H7N2) segment 4 (HA) 2970.5 0.000000e+00 1643/1660 (98%) EPI17973 A/chicken/NY/21586-8/99 (A/H7N2) segment 4 (HA) 2970.5 0.000000e+00 1642/1659 (98%) EPI17957 A/chicken/NJ/15814-9/99 (A/H7N2) segment 4 (HA) 2970.5 0.000000e+00 1642/1659 (98%) EPI159014 A/environment/NY/260422-10/2003 (A/H7N2) segment 4 (HA) 2965.0 0.000000e+00 1641/1659 (98%) EPI168971 A/avian/New York/Sg-00419/2003 (A/H7N2) segment 4 (HA) 2963.1 0.000000e+00 1632/1646 (99%) EPI168964 A/avian/New York/Sg-00417/2003 (A/H7N2) segment 4 (HA) 2959.5 0.000000e+00 1633/1648 (99%) EPI166558 A/chicken/New Jersey/Sg-00334/1999 (A/H7N2) segment 4 (HA) 2950.2 0.000000e+00 1627/1642 (99%) EPI159006 A/chicken/CT/260413-2/2003 (A/H7N2) segment 4 (HA) 2948.4 0.000000e+00 1638/1659 (98%) EPI141612 A/New York/107/2003 (A/H7N2) segment 4 (HA) 2948.4 0.000000e+00 1638/1659 (98%) EPI168936 A/avian/New York/Sg-00410/2003 (A/H7N2) segment 4 (HA) 2944.7 0.000000e+00 1626/1642 (99%) EPI17943 A/avian/NY/76247-3/00 (A/H7N2) segment 4 (HA) 2942.8 0.000000e+00 1637/1659 (98%) EPI18019 A/chicken/NJ/15827/99 (A/H7N2) segment 4 (HA) 2941.0 0.000000e+00 1637/1659 (98%) EPI168719 A/avian/New York/Sg-00353/2000 (A/H7N2) segment 4 (HA) 2939.1 0.000000e+00 1629/1648 (98%) EPI159038 A/unknown/NY/120485-5/2001 (A/H7N2) segment 4 (HA) 2937.3 0.000000e+00 1636/1659 (98%) EPI17939 A/avian/NY/70411-12/00 (A/H7N2) segment 4 (HA) 2937.3 0.000000e+00 1636/1659 (98%) EPI166566 A/chicken/New Jersey/Sg-00336/1999 (A/H7N2) segment 4 (HA) 2935.4 0.000000e+00 1619/1634 (99%) EPI168715 A/chicken/New York/Sg-00352/2000 (A/H7N2) segment 4 (HA) 2933.6 0.000000e+00 1628/1648 (98%) EPI168727 A/avian/New York/Sg-00355/2000 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1627/1647 (98%) EPI160761 A/environment/New York/23165-5/2005 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1635/1659 (98%) EPI156561 A/chicken/New York/30732-11/2005 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1635/1659 (98%) EPI156553 A/chicken/New York/30732-10/2005 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1635/1659 (98%) EPI156545 A/chicken/New York/30732-9/2005 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1635/1659 (98%) EPI141468 A/environment/New York/30732-4/2005 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1635/1659 (98%) EPI141436 A/chicken/New York/23165-6/2005 (A/H7N2) segment 4 (HA) 2931.8 0.000000e+00 1635/1659 (98%) EPI166551 A/avian/New York/Sg-00331/1999 (A/H7N2) segment 4 (HA) 2929.9 0.000000e+00 1618/1634 (99%) EPI168739 A/avian/New York/Sg-00358/2001 (A/H7N2) segment 4 (HA) 2928.1 0.000000e+00 1627/1648 (98%) EPI171061 A/environment/New York/30732-1/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI168707 A/avian/New York/Sg-00350/2000 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1624/1644 (98%) EPI166615 A/avian/New York/Sg-00349/2000 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1622/1641 (98%) EPI166588 A/quail/New Jersey/Sg-00342/2000 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1616/1632 (99%) EPI166555 A/chicken/New Jersey/Sg-00333/1999 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1616/1632 (99%) EPI166540 A/avian/New York/Sg-00328/1999 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1616/1632 (99%) EPI156569 A/muscovy duck/New York/30732-13/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI156537 A/chicken/New York/30732-8/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI156521 A/environment/New York/23165-1/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI152953 A/quail/New York/30732-12/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI141484 A/turkey/New York/30732-7/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI141476 A/chicken/New York/30732-6/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI141460 A/environment/New York/30732-3/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI141452 A/environment/New York/30732-2/2005 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI18023 A/chicken/NY/34173-3/99 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI17975 A/chicken/NY/22409-4/99 (A/H7N2) segment 4 (HA) 2926.2 0.000000e+00 1634/1659 (98%) EPI168735 A/avian/New York/Sg-00357/2001 (A/H7N2) segment 4 (HA) 2924.4 0.000000e+00 1617/1634 (98%) EPI166562 A/duck/New Jersey/Sg-00335/1999 (A/H7N2) segment 4 (HA) 2924.4 0.000000e+00 1617/1634 (98%) EPI168932 A/avian/New York/Sg-00409/2003 (A/H7N2) segment 4 (HA) 2922.5 0.000000e+00 1623/1643 (98%) EPI228453 A/chicken/DE/VIVA/2004 (A/H7N2) segment 4 (HA) 2920.7 0.000000e+00 1633/1659 (98%) EPI168979 A/chicken/New Jersey/Sg-00421/2004 (A/H7N2) segment 4 (HA) 2920.7 0.000000e+00 1625/1647 (98%) EPI168711 A/avian/New York/Sg-00351/2000 (A/H7N2) segment 4 (HA) 2920.7 0.000000e+00 1623/1644 (98%) EPI160769 A/chicken/New York/23165-10/2005 (A/H7N2) segment 4 (HA) 2920.7 0.000000e+00 1633/1659 (98%) EPI141596 A/environment/New York/23165-4/2005 (A/H7N2) segment 4 (HA) 2920.7 0.000000e+00 1633/1659 (98%) EPI17945 A/avian/NY/81746-5/00 (A/H7N2) segment 4 (HA) 2920.7 0.000000e+00 1633/1659 (98%) EPI166570 A/avian/New York/Sg-00337/1999 (A/H7N2) segment 4 (HA) 2918.8 0.000000e+00 1616/1634 (98%) EPI168751 A/avian/New York/Sg-00362/2001 (A/H7N2) segment 4 (HA) 2917.0 0.000000e+00 1623/1645 (98%) EPI168723 A/avian/New York/Sg-00354/2000 (A/H7N2) segment 4 (HA) 2917.0 0.000000e+00 1623/1645 (98%) EPI141604 A/chicken/New York/23165-7/2005 (A/H7N2) segment 4 (HA) 2917.0 0.000000e+00 1633/1660 (98%) EPI228452 A/chicken/DE/HOBO/2004 (A/H7N2) segment 4 (HA) 2915.1 0.000000e+00 1633/1660 (98%) EPI177151 A/unknown/New York/11646-9/2005 (A/H7N2) segment 4 (HA) 2915.1 0.000000e+00 1633/1660 (98%) EPI177135 A/chicken/New York/23165-9/2005 (A/H7N2) segment 4 (HA) 2915.1 0.000000e+00 1632/1659 (98%)
  23. niman
    LOCUS CY014896 1707 bp cRNA linear VRL 21-SEP-2006 DEFINITION Influenza A virus (A/chicken/Pennsylvania/143586/2002(H7N2)) segment 4, complete sequence. ACCESSION CY014896 VERSION CY014896.1 KEYWORDS . SOURCE Influenza A virus (A/chicken/Pennsylvania/143586/2002(H7N2)) ORGANISM Influenza A virus (A/chicken/Pennsylvania/143586/2002(H7N2)) Viruses; ssRNA viruses; ssRNA negative-strand viruses; Orthomyxoviridae; Influenzavirus A. REFERENCE 1 (bases 1 to 1707) AUTHORS Obenauer,J.C., Denson,J., Mehta,P.K., Su,X., Mukatira,S., Finkelstein,D.B., Xu,X., Wang,J., Ma,J., Fan,Y., Rakestraw,K.M., Webster,R.G., Hoffmann,E., Krauss,S., Zheng,J., Zhang,Z. and Naeve,C.W. TITLE Large-scale sequence analysis of avian influenza isolates JOURNAL Science 311 (5767), 1576-1580 (2006) PUBMED 16439620 REFERENCE 2 (bases 1 to 1707) AUTHORS Obenauer,J.C., Denson,J., Mehta,P.K., Su,X., Mukatira,S., Finkelstein,D.B., Xu,X., Wang,J., Ma,J., Fan,Y., Rakestraw,K.M., Webster,R.G., Hoffmann,E., Krauss,S., Zheng,J., Zhang,Z. and Naeve,C.W. TITLE Direct Submission JOURNAL Submitted (13-SEP-2006) Hartwell Center for Bioinformatics & Biotechnology, St. Jude Children's Research Hospital, 332 North Lauderdale Str., Memphis, TN 38105, USA FEATURES Location/Qualifiers source 1..1707 /organism="Influenza A virus (A/chicken/Pennsylvania/143586/2002(H7N2))" /mol_type="viral cRNA" /strain="A/chicken/Pennsylvania/143586/2002" /serotype="H7N2" /host="Avian" /db_xref="taxon:342184" /segment="4" /country="USA: Pennsylvania" /collection_date="2002" primer_bind 1..19 /note="PCR amplification primer sequence" gene 22..1680 /gene="HA" CDS 22..1680 /gene="HA" /function="receptor binding and fusion protein" /codon_start=1 /product="hemagglutinin" /protein_id="ABI84849.1" /translation="MNIQILAFIACVLTGAKGDKICLGHHAVANGTKVNTLTERGIEV VNATETVETANIKKICTQGKRPTDLGQCGLLGTLIGPPQCDQFLEFSSDLIIERREGT DVCYPGKFTNEESLRQILRRSGGIGKESMGFTYSGIRTNGATSACTRSGSSFYAEMKW LLSNSDNAAFPQMTKAYRNPRNKPALIIWGVHHSESVSEQTKLYGSGNKLITVRSSKY QQSFTPSPGARRIDFHWLLLDPNDTVTFTFNGAFIAPDRASFFRGESLGVQSDAPLDS SCRGDCFHSGGTIVSSLPFQNINSRTVGKCPRYVKQKSLLLATGMRNVPEKPKPRGLF GAIAGFIENGWEGLINGWYGFRHQNAQGEGTAADYKSTQSAIDQITGKLNRLIGKTNQ QFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVAMENQHTIDLADSEMSKLY ERVKKQLRENAEEDGTGCFEIFHKCDDQCMESIRNNTYDHTQYRTESLQNRIQIDPVK LSSGYKDIILWFSFGASCFLLLAIAMGLVFICIKNGNMQCTICI" sig_peptide 22..75 /gene="HA" mat_peptide 76..1014 /gene="HA" /product="HA1" mat_peptide 1015..1677 /gene="HA" /product="HA2" primer_bind complement(1688..1707) /note="PCR amplification primer sequence" ORIGIN 1 agcaaaagca ggggatacaa aatgaacatt caaattctgg cattcattgc ttgtgtgctg 61 actggagcta aaggagacaa aatatgtctt gggcaccatg ctgtggcaaa tggaacaaaa 121 gtgaacacat taacagagag ggggattgaa gtagtgaatg ccacagagac agtggaaact 181 gcgaatatca agaaaatatg tacccagggg aaaaggccaa cagatctggg acaatgtgga 241 cttctaggaa ccctaatagg acctccccaa tgtgatcaat tcctggagtt ttcctctgat 301 ttgataattg agcgaagaga aggaaccgat gtatgctatc ccggtaaatt cacaaatgaa 361 gaatcactga ggcagatcct tcgaagatca ggaggaattg gtaaggagtc aatgggcttc 421 acctatagtg gaataagaac caatggagcg acaagtgcct gcacaagatc aggttcttct 481 ttctatgcag agatgaagtg gttgctgtcg aattcagata atgcagcatt cccacagatg 541 acaaaggcgt atagaaatcc cagaaacaaa ccagctctga taatttgggg agttcatcac 601 tctgaatcgg ttagcgagca gaccaaactc tatggaagcg gaaacaagtt gataacagta 661 agaagctcaa aataccagca atcattcacc ccaagtccgg gagcacggag aatcgatttt 721 cactggctac tccttgatcc caatgacaca gtgaccttca ctttcaatgg ggcattcata 781 gcccctgaca gggcaagttt ctttagggga gaatcactag gagtccagag tgatgctcct 841 ttggattcta gttgtagagg ggattgcttt cacagtgggg gtacgatagt cagttccctg 901 ccattccaaa acatcaactc tagaactgtg gggaaatgcc ctcggtatgt caaacagaaa 961 agcctccttc tggctacagg aatgagaaat gttccagaga aaccaaagcc cagaggcctt 1021 tttggagcaa ttgctggatt catagagaat ggatgggagg gtctcatcaa tggatggtat 1081 ggtttcagac atcaaaatgc acaaggagag ggaactgcag ctgactacaa aagcacccag 1141 tctgcaatag atcagatcac aggcaaattg aatcgtttaa ttggcaaaac aaatcagcag 1201 tttgagctga tagacaatga gttcaatgag atagaacaac aaataggaaa tgtcattaat 1261 tggacacgag acgcaatgac tgagatatgg tcgtataatg ctgagctgtt ggtggcaatg 1321 gaaaatcagc atacaataga tcttgcggac tcagaaatga gcaaacttta tgagcgtgtc 1381 aaaaaacaac taagggagaa tgctgaagaa gatggaactg gatgttttga gatatttcat 1441 aagtgtgatg atcagtgtat ggagagcata aggaacaaca cgtatgacca tacccaatac 1501 agaacagagt cattgcagaa tagaatacag atagacccag tgaaattgag tagtggatac 1561 aaagacataa tcttatggtt tagcttcggg gcatcatgtt ttcttcttct agccattgca 1621 atgggattgg ttttcatttg cataaagaat ggaaacatgc agtgcactat ttgtatatag 1681 tttgagaaaa acacccttgt ttctact
  24. niman
    12/23/2016 PA Agriculture Department Tests, Monitors Cats Possibly Exposed to Influenza in NYC Shelters State Veterinarian Recommends Hand-Washing Following Exposure to Quarantined Cats Harrisburg, PA - Veterinarians at Pennsylvania’s Department of Agriculture have confirmed that almost a dozen cats that may have been exposed to an avian-type influenza virus in New York City shelters have been placed in special quarantine in one of three animal shelters in Chester County. The low-pathogenic influenza virus does not pose a health hazard to people, according to the Pennsylvania Department of Health, however, health officials reminded citizens to wash their hands thoroughly and exercise precautions recommended during flu season--especially for those people who may have come into contact with the quarantined cats that originated from the New York shelters or were exposed to cats from these shelters. The Agriculture department is involved because the North American H7N2 virus has been sequenced and is reportedly identical to the virus found in turkeys and chickens in Pennsylvania and Virginia during the 2002-2003 winter season. “The cats we're testing and monitoring were transferred last month from an animal shelter in New York before some of the cats developed symptoms similar to a head cold or mild case of the flu. The cats have a low-pathogenic variety of the avian influenza virus,” explained State Veterinarian Dr. David Wolfgang. “Fortunately, we have no indication that any poultry flocks have been exposed to an infected cat.” There have been no reports of infected cats spreading the virus to other species, nor has the department received any information to suggest that the virus is causing any human illness, even among people in close contact with the cats. The sick cats are being treated and are expected to recover fully. In the meanwhile, the Agriculture department has placed quarantines on three shelters in Chester County and has recommended that cat adoptions from those shelters should be postponed until further notice. The Agriculture department is working with the three shelters to obtain records of any cats leaving these shelters since mid-November, when the affected cats were diagnosed. Representatives from the Agriculture department will contact anyone who has adopted or fostered cats from these shelters. “During our outreach to those who have adopted or fostered any cats from these shelters, we ask whether they have backyard poultry or contact with commercial poultry flocks. If so, we will follow our normal avian influenza protocols, which involves treating the poultry as potentially exposed to avian influenza,” Wolfgang explained. “We would quarantine the poultry and test samples at least 14 days after the cat(s) arrived in the home.” For the latest information on avian influenza, visit The Department of Agriculture’s Animal Health and Diagnostic Services page at AHDServices.http://www.agriculture.pa.gov/Protect/AHDServices/avian_influenza/Pages/default.aspx">AHDServices.> MEDIA CONTACT: Bonnie McCann - 717-783-0133
  25. niman
    Veterinarians at Pennsylvania’s Department of Agriculture have confirmed that almost a dozen cats that may have been exposed to an avian-type influenza virus in New York City shelters have been placed in special quarantine in one of three animal shelters in Chester County. http://www.media.pa.gov/pages/Agriculture_details.aspx?newsid=506
×
×
  • Create New...