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Zika virus isolate ZIKV/Homo_sapiens/Colombia/2016/ZC188Se polyprotein gene, complete cds 10,389 bp linear RNA Accession: KY317936.1 GI: 1124099354 GenBankFASTAGraphics Select item 11240993568. Zika virus isolate ZIKV/Homo_sapiens/Colombia/2016/ZC192Se polyprotein gene, complete cds 10,462 bp linear RNA Accession: KY317937.1 GI: 1124099356 GenBankFASTAGraphics Select item 11240993589. Zika virus isolate ZIKV/Homo_sapiens/Colombia/2016/ZC199Se polyprotein gene, complete cds 10,387 bp linear RNA Accession: KY317938.1 GI: 1124099358 GenBankFASTAGraphics Select item 112409936010. Zika virus isolate ZIKV/Homo_sapiens/Colombia/2016/ZC204Se polyprotein gene, complete cds 10,608 bp linear RNA Accession: KY317939.1 GI: 1124099360 GenBankFASTAGraphics Select item 112409936211. Zika virus isolate ZIKV/Homo_sapiens/Colombia/2016/ZC207Se polyprotein gene, complete cds 10,391 bp linear RNA Accession: KY317940.1 GI: 1124099362 GenBankFASTAGraphics

Scripps has published at Genbank the 5 full Colombia sequences at their website https://github.com/andersen-lab/zika-florida/tree/master/consensus_sequences 36 1.5E+04 coding-complete ZC188_423568715_XX_2016-01-16_colombia ZC188.c1.SR.a1.l3.l4.r1 ZC192Se 423401315 Serum **** 98.36 30396.29 2016.01.07 Columbia 39 1.7E+04 coding-complete ZC192_423401315_XX_2016-01-07_colombia ZC192.c1.SR.a1.l3.l4.r1 ZC204Se 424439915 Serum **** 99.74 29003.25 2016.01.06 Columbia 48 2.1E+04 coding-complete ZC204_424439915_XX_2016-01-05_colombia ZC204.c1.SR.a1.l1.l2.r1 ZC207Se 423217515 Serum **** 96.68 19477.70 2016.01.09 Columbia 16 6.7E+04 coding-complete ZC207_423217515_XX_2016-01-09_colombia ZC207.c1.SR.a1.l1.l2.r1 ZC199Se 4238001315 Serum *** 97.44 98358.93 2016.01.10 Colombia 10 4.3E+03 coding-complete ZC199Se_XX_2016-01-10_colombia ZC199.c1.SR.a1.l1.l2.l3.l4.l5.l6.l7.r1

week conf discard untested total weekly increase 50 72 234 494 800 15 49 69 231 485 785 14 48 67 229 475 771 19 47 60 229 463 752 20 46 60 227 445 732 23 45 58 227 424 709 37 44 58 225 389 672 19 43 57 223 373 653 29 42 54 216 354 624 22 41 47 213 342 602 16 40 46 208 332 586 25 39 42 204 315 561 23 38 42 200 296 538 55 37 41 196 246 483 32 36 40 195 216 451 12 35 40 190 209 439 13 34 38 168 220 426 25 33 34 158 209 401 16 32 29 102 254 385 18 31 24 101 242 367 23 30 22 97 225 344 24 29 21 92 207 320 23 28 21 80 196 297 41 27 21 75 160 256 62 26 18 64 112 194 13 25 13 56 112 181 17 24 11 51 102 164 27 23 6 50 81 137 19 22 6 43 69 118 23 21 6 41 48 95 7 20 5 26 57 88 7 19 5 26 50 81 9 18 5 24 43 72 14 17 5 21 32 58 8 16 4 20 26 50 6 15 4 18 22 44 11

Between the epidemiological weeks 01 to 50 of 2016, Confirmed (72) seventy-two cases of microcephaly and others CNS congenital defects associated with the Zika virus. 175 cases Were discarded of which 59 did not meet the definition Of cases and 494 cases are under study. http://www.ins.gov.co/boletin-epidemiologico/Boletn Epidemiolgico/2016 Boletín epidemiológico semana 50.pdf

week conf discard untested total weekly increase 49 69 231 485 785 14 48 67 229 475 771 19 47 60 229 463 752 20 46 60 227 445 732 23 45 58 227 424 709 37 44 58 225 389 672 19 43 57 223 373 653 29 42 54 216 354 624 22 41 47 213 342 602 16 40 46 208 332 586 25 39 42 204 315 561 23 38 42 200 296 538 55 37 41 196 246 483 32 36 40 195 216 451 12 35 40 190 209 439 13 34 38 168 220 426 25 33 34 158 209 401 16 32 29 102 254 385 18 31 24 101 242 367 23 30 22 97 225 344 24 29 21 92 207 320 23 28 21 80 196 297 41 27 21 75 160 256 62 26 18 64 112 194 13 25 13 56 112 181 17 24 11 51 102 164 27 23 6 50 81 137 19 22 6 43 69 118 23 21 6 41 48 95 7 20 5 26 57 88 7 19 5 26 50 81 9 18 5 24 43 72 14 17 5 21 32 58 8 16 4 20 26 50 6 15 4 18 22 44 11

Between the epidemiological weeks 01 to 49 of 2016, Confirmed (69) sixty-nine cases of associated microcephaly To the Zika virus, 231 cases were discarded and 485 cases were study. http://www.ins.gov.co/boletin-epidemiologico/Boletn Epidemiolgico/2016 Boletín epidemiológico semana 49.pdf

week conf discard untested total weekly increase 48 67 229 475 771 19 47 60 229 463 752 20 46 60 227 445 732 23 45 58 227 424 709 37 44 58 225 389 672 19 43 57 223 373 653 29 42 54 216 354 624 22 41 47 213 342 602 16 40 46 208 332 586 25 39 42 204 315 561 23 38 42 200 296 538 55 37 41 196 246 483 32 36 40 195 216 451 12 35 40 190 209 439 13 34 38 168 220 426 25 33 34 158 209 401 16 32 29 102 254 385 18 31 24 101 242 367 23 30 22 97 225 344 24 29 21 92 207 320 23 28 21 80 196 297 41 27 21 75 160 256 62 26 18 64 112 194 13 25 13 56 112 181 17 24 11 51 102 164 27 23 6 50 81 137 19 22 6 43 69 118 23 21 6 41 48 95 7 20 5 26 57 88 7 19 5 26 50 81 9 18 5 24 43 72 14 17 5 21 32 58 8 16 4 20 26 50 6 15 4 18 22 44 11

Intensified monitoring of microcephaly and other Congenital defects of the Central Nervous System Revision as of December 09, 2016 Between the epidemiological weeks 01 to 48 of 2016, Confirmed (67) sixty-seven cases of associated microcephaly To the Zika virus, 229 cases were discarded and 475 cases were study. http://www.ins.gov.co/boletin-epidemiologico/Boletn Epidemiolgico/2016 Boletín epidemiológico semana 48.pdf

Outcomes of Pregnancies with Laboratory Evidence of Possible Zika Virus Infection in the United States, 2016 Completed pregnancies with or without birth defects 824 Includes aggregated data reported to the US Zika Pregnancy Registry* Outcomes for Completed Pregnancies in the United States and District of Columbia Liveborn infants with birth defects* 34 Includes aggregated data reported to the US Zika Pregnancy Registry* Pregnancy losses with birth defects** 5 Includes aggregated data reported to the US Zika Pregnancy Registry* *As of December 13, 2016 What these numbers show The number of completed pregnancies with or without birth defects include those that ended in a live birth, miscarriage, stillbirth, or termination. The number of liveborn infants and pregnancy losses with birth defects include those among completed pregnancies with laboratory evidence of possible Zika virus infection that have been reported to the US Zika Pregnancy Registry. These numbers rely on reporting to the US Zika Pregnancy Registry and may increase or decrease as new cases are added or information on existing cases is clarified. For example, CDC cannot report the number of completed pregnancies with or without poor pregnancy outcomes that have not yet been reported to the US Zika Pregnancy Registry. The number of liveborn infants and pregnancy losses with birth defects are combined for the 50 US states, and the District of Columbia. CDC is not reporting individual state, tribal, territorial or jurisdictional level data to protect the privacy of the women and children affected by Zika. CDC is using a consistent case inclusion criteria to monitor brain abnormalities and other adverse pregnancy outcomes potentially related to Zika virus infection during pregnancy in the US states and territories. Puerto Rico is not using the same inclusion criteria; CDC is not reporting numbers for adverse pregnancy outcomes in the territories at this time. Birth defects reported include those that have been detected in infants infected with Zika before, during, or shortly after birth, including microcephaly, calcium deposits in the brain indicating possible brain damage, excess fluid in the brain cavities and surrounding the brain, absent or poorly formed brain structures, abnormal eye development, or other problems resulting from damage to brain that affects nerves, muscles and bones, such as clubfoot or inflexible joints, and confirmed hearing loss. What these new numbers do not show These numbers are not real time estimates. They reflect the outcomes of pregnancies with any laboratory evidence of possible Zika virus infection reported to the US Zika Pregnancy Registry as of 12 noon Tuesday the week prior. Additionally, there may be delays in reporting of pregnancy outcomes from the jurisdictions. Although these outcomes occurred in pregnancies with laboratory evidence of possible Zika virus infection, we do not know whether they were caused by Zika virus infection or other factors. Where do these numbers come from? These data reflect pregnancies reported to the US Zika Pregnancy Registry. CDC, in collaboration with state, local, tribal and territorial health departments, established this system for comprehensive monitoring of pregnancy and infant outcomes following Zika virus infection. The data collected through this system will be used to update recommendations for clinical care, to plan for services and support for pregnant women and families affected by Zika virus, and to improve prevention of Zika virus infection during pregnancy. See detailed case inclusion criteria for healthcare providers https://www.cdc.gov/zika/geo/pregnancy-outcomes.html

Highly pathogenic avian influenza, Tunisia Information received on 28/12/2016 from Dr Malek Zrelli, Directeur Général, Direction Générale des Services Vétérinaires, Ministère de l'Agriculture, Tunis, Tunisia Summary Report type Follow-up report No. 2 Date of start of the event 24/11/2016 Date of confirmation of the event 30/11/2016 Report date 28/12/2016 Date submitted to OIE 28/12/2016 Reason for notification First occurrence of a listed disease Manifestation of disease Clinical disease Causal agent Highly pathogenic avian influenza virus in wild birds Serotype H5N8 Nature of diagnosis Laboratory (advanced) This event pertains to a defined zone within the country Related reports Immediate notification (01/12/2016) Follow-up report No. 1 (14/12/2016) Follow-up report No. 2 (28/12/2016) Outbreaks There are no new outbreaks in this report Epidemiology Source of the outbreak(s) or origin of infection Unknown or inconclusive Epidemiological comments - The H5 sequence fragment was sent to the Reference Laboratory in Padova to identify the neuraminidase (N). The Reference Laboratory confirmed that the H5 sequence fragment is directly related to highly pathogenic H5 virus sequences clade 2.3.4.4 (including the H5N8 viruses currently circulating in Russia and Europe). - A phylogenetic analysis is on-going at the Experimental Zooprophylactic Institute (IZS), Venice (OIE Reference Laboratory). - The situation is stable. Control measures Measures applied Surveillance outside containment and/or protection zone Official disposal of carcasses, by-products and waste Surveillance within containment and/or protection zone Control of wildlife reservoirs Vaccination prohibited No treatment of affected animals Measures to be applied No other measures Future Reporting The event is continuing. Weekly follow-up reports will be submitted. http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapFullEventReport&reportid=22090

H7N2 Questions & Answers Language: English Español Recommend on FacebookTweet Cats can make great companions, but cat owners should be aware that cats can carry germs that can make people sick. Keep in mind that even cats that appear healthy can spread germs to people and other animals. Always wash your hands with soap and running water after contact with cats, cat saliva or feces, and after cleaning a litter box. Thoroughly washing your hands can help reduce the risk of disease transmission between people and pets. More advice on staying healthy while enjoying your pet cat can be found at Healthy Pets, Healthy People: Cats. What is H7N2? H7N2 is an influenza virus that normally circulates in birds. Avian influenza viruses, commonly known as “bird flu” or “avian flu,” do not normally infect humans, but rare cases of human infection have occurred in the past. Most often, human infections with bird flu viruses result from direct contact with infected birds. Recently CDC became aware of an outbreak of low pathogenic avian influenza A (H7N2) virus (LPAI H7N2) among cats in animal shelters in New York City. One human infection was detected in a person who had close, prolonged unprotected exposure to the respiratory secretions of H7N2 infected, sick cats at an affected shelter. For people who are in close contact with infected cats, the risk of infection is thought to be low. However, it is possible that additional human infections could occur. Is this H7N2 virus the same as ‘cat flu’? No, ‘cat flu’ is an everyday term people use to describe infections in cats caused by two viruses that are not actually influenza viruses. One is feline calicivirus, and the other is a feline herpes virus. These viruses cannot be transmitted to humans. How can I tell if my cat has H7N2? At this time, H7N2 infections have only been found in cats associated with animal shelters in New York City (specifically, the Animal Care Centers of New York City’s (ACC) shelters). No other H7N2 outbreaks or H7N2 infections in cats in the United States have been reported. Therefore, unless your cat recently came from an ACC animal shelter in New York City, the likelihood of your cat having H7N2 is extremely low. Top of Page How does influenza virus spread in cats? While cats have been reported to occasionally be infected from people with human seasonal influenza viruses, infection with avian influenza such as from infected poultry is known but is not common. However, influenza in cats can spread the same way that human flu spreads—through direct contact (licking, nuzzling); through the air (droplets made from coughing or sneezing, including nasal discharge); and via contaminated surfaces (such as food and water bowls, cages, or through touch). Also, germs in cat saliva may be transferred onto the cat's coat during grooming and can spread germs to people during contact (e.g., petting, kissing) and can also contaminate the pet’s environment. How can a person catch a flu virus from a cat? Generally, a person can get infected with a flu virus when enough of the virus gets into their eyes, nose or mouth, or is inhaled (from droplets or possibly dust containing the virus). People can potentially get flu from a sick cat by touching virus-containing secretions from the cat and then touching their eyes, nose or mouth. Also, sick cats may cough or sneeze, which can expel droplets containing the virus into the air that a person can breathe in or that can enter a person’s eyes, nose or mouth. What are the symptoms of influenza in cats? While not common, influenza infection in cats has generally resulted in mild illness. Although not all sick cats may develop symptoms, cats infected with influenza virus can develop respiratory illness with the following signs and symptoms: Sneezing Coughing Fever Discharge from the nose or eyes Lack of energy Loss of appetite Some cats with influenza virus could become severely ill with other complications including pneumonia or secondary bacterial infections. Cats infected with the H7N2 influenza virus in the current outbreak in NYC animal shelters also have shown signs of persistent cough, lip smacking, runny nose, and fever. Top of Page Why is CDC concerned about H7N2? As part of CDC’s mission to protect the public from emerging health threats, CDC monitors changes in flu viruses found in human and animal populations. Finding a bird flu virus in an unexpected animal, like a cat, is always concerning, because it means the virus has changed in a way that may pose a new health threat. Animal viruses that gain the ability to infect humans are especially concerning because most people will not have existing immune protection against such viruses. Also, there is potential for a pandemic (a global outbreak of disease) to occur when a new animal virus gains the ability to infect humans and also has the ability to spread efficiently from person to person. For these reasons, these incidents must be carefully investigated and appropriate actions taken to ensure that there is no ongoing spread of the novel virus among people. Is H7N2 dangerous for cats and humans? The H7N2 virus has been shown to spread quickly in cats, and while most cats infected this far have experienced mild to moderate illness, at least one cat has died. Influenza is a contagious respiratory illness, and any influenza virus, including H7N2, has the potential to cause mild to severe illness or severe flu complications. Of the two previously known cases of human infection with H7N2 virus infection (which occurred in 2002 and 2003), both experienced mild to moderate illness and both recovered. Is there a human vaccine for H7N2? Will this season’s flu vaccine protect me against H7N2? No, right now there is no human vaccine to protect against this virus, and this season’s flu vaccine does not offer protection against H7N2. There is a candidate vaccine virus (CVV) in the U.S. pandemic preparedness stockpile that could be provided to flu vaccine manufactures to mass produce a H7N2 flu vaccine in the case of an emergency. CDC will conduct tests to see whether this existing H7N2 CVV would offer protection against the 2016 H7N2 virus. Is there treatment for a person infected with the H7N2 virus? Yes, flu antiviral drugs are used to treat seasonal flu illness in children and adults, and what we know about this H7N2 virus so far suggests that currently approved and recommended antiviral drugs should work. Studies on other flu viruses have shown that early treatment works better and is especially important for people with a higher risk for flu complications. Top of Page Which groups of people are at high risk for developing serious flu-related complications? CDC believes that the same people who are at high risk of developing complications from seasonal flu would also be at higher risk of serious illness from H7N2. This includes the following: children younger than 5-years-old, especially younger than 2-years-old, people 65 years and older, pregnant women, and people with certain long-term health conditions (like asthma, diabetes, heart disease, weakened immune systems, and neurological or neurodevelopmental conditions). A full list of people at high risk of flu-related complications is available at People at High Risk of Developing Flu-Related Complications. Flu complications, depending on their severity, can possibly require hospitalization and sometimes result in death. Consequently, if you own a pet exhibiting flu symptoms, do not allow your sick animal to kiss or lick your face, and it is advisable not to cuddle with your animal if it has a flu-like illness. Can I get H7N2 from my cat? If your cat does not have H7N2, you cannot get H7N2 from your cat. If your cat has H7N2, the risk of you getting H7N2 from contact with your cat is low, but likely increases with duration and intensity of exposure. Can I get H7N2 if I don’t have contact with cats? Based on what is known at this time, CDC believes that for people who have no contact with infected cats the risk of H7N2 infection is very low. How many people have been infected with H7N2 in the United States? Recently one human infection with H7N2 virus was identified in a veterinarian who was caring for sick cats. That infection was associated with an outbreak of H7N2 virus among cats in animal shelters in New York City. Previously there have been two human infections with similar H7N2 viruses in the United States, occurring in 2002 and 2003. One of these infections was associated with exposure to sick birds (poultry). The second source of infection could not be determined. Both people who became ill as a result of H7N2 virus infection recovered completely. Top of Page What is CDC doing about the H7N2 situation in New York City? CDC is in close communication with human and animal health partners about this situation and supporting the on-the-ground response, which is being led by public health and animal health experts in New York City. What should I do if I have a cat? If you have a cat, it’s not necessary to do more than you normally do to protect yourself from germs that cats carry. CDC recommends washing your hands with running water and soap after contact with cats, their feces, litter box, and their food. It’s also important to seek routine veterinary care for your cat. Healthy Pets, Healthy People: Cats If your cat seems ill, do not allow your cat to kiss or lick your face, and consult your veterinarian as you normally would. What should I do if my cat has respiratory symptoms? Respiratory illness in cats can be caused by many different medical problems including many types of pathogens. Contact your pet’s veterinarian to help determine the cause and the best course of treatment. What should I do while my cat is sick? Because of concerns about diseases that can spread between pets and people, young children, senior citizens, pregnant women, and people with weakened immune systems should avoid contact with sick pets. Top of Page Should I avoid places where cats are present? It is not necessary to avoid places where cats are present. Based on what is known at this time, CDC believes that the risk of human infection from contact with infected cats is low. Are there things I should do, even if I’m not around cats? As always, take time to get an annual flu vaccine as soon as flu vaccine becomes available in your community, to protect yourself from the human seasonal flu viruses that are most likely to circulate this season. Is H7N2 the same as seasonal flu? N o, H7N2 virus is a non-human, avian influenza virus that normally circulates in birds. Seasonal influenza viruses normally circulate in humans and include H1N1, H3N2 and B-lineage viruses. Top of Page Page last reviewed: December 23, 2016 Page last updated: December 23, 2016 https://www.cdc.gov/flu/fluincats/h7n2-cat-questions-answers.htm

Avian Influenza A (H7N2) in Cats in Animal Shelters in NY; One Human Infection Recommend on FacebookTweet December 22, 2016 — An outbreak of avian lineage influenza A H7N2 (“H7N2”) virus infection among cats in an animal shelter in New York City was first reported on December 9, 2016. CDC has confirmed one associated human infection in a person who had close, prolonged unprotected exposure to the respiratory secretions of infected, sick cats at an affected New York City animal shelter. The person had relatively mild illness and is recovering. No person-to-person spread of this virus has been identified at this time. CDC believes the risk to the public’s health from this virus is low, but CDC and state and local public health authorities are conducting a routine investigation to try to identify any other human infections associated with exposure to ill cats and ensure that there is no person-to-person spread of this virus occurring. Avian influenza viruses have rarely been reported in cats, but it is possible for cats to be infected with influenza, including avian influenza viruses. This is the third human infection with avian influenza A H7N2 ever reported in the United States. Previously there have been two human infections with similar H7N2 occurring in 2002 (VA) and 2003 (NY). One of these infections was associated with exposure to infected poultry. The source of infection in the second person could not be determined. Both people who became ill as a result of H7N2 virus infection recovered completely. Other human infections with avian influenza viruses have resulted mostly from prolonged close contact with infected birds. Finding an avian influenza virus in an unexpected host (like a domestic cat) is always concerning and any human infection with a non-human influenza virus is concerning as well. These incidents must be carefully investigated and appropriate actions taken to ensure that there is no ongoing spread of this H7N2 virus among people. Animal and public health experts are working together to learn more about this situation and the characteristics of this virus. More than 350 people with exposure to infected cats during this outbreak have been screened or tested for infection with H7N2. The ill person reported by New York City Department of Health and Mental Hygiene (NYC DOHMH) is the only human infection that has been detected. This, combined with past experience with rare avian influenza infections in humans via birds, suggest that the risk of human infection is low, but likely increases with duration and intensity of exposure. It is possible that additional human infections could be detected in association with this outbreak in cats. The risk of human infection from contact with an H7N2-infected person also is thought to be low. The risk posed by this virus to the public (people who have no contact with infected cats or an infected person) is thought to be very low at this time. CDC is in close communication with human and animal health partners regarding this situation, providing situation-specific guidance related to testing, clinical management, antiviral treatment and chemoprophylaxis, and infection control to support the on-the-ground response, which is being led by public health and animal health experts in New York City. The investigation revealed that the person infected with H7N2 traveled on a domestic flight while potentially infectious. CDC is beginning a contact investigation to notify the passengers seated near this traveler who may have been exposed to the disease. CDC has disease-specific instructions (protocols) to identify passengers who may have been exposed during a flight. This investigation will focus on the persons sitting near the ill traveler. State and local health department officials will reach out to the traveler contact(s) in their jurisdictions and provide recommendations and instructions for laboratory testing or clinical follow-up when needed. CDC has long-standing guidance for cat owners, including that people wash their hands with soap and running water after contact with cats, cat saliva or stool, and after cleaning a litter box. In the context of the current outbreak in New York, people who have adopted cats from affected shelters and whose cats are showing signs of respiratory illness should minimize close contact with their pet during its illness and manage their cats illness at home in consultation with a private veterinarian as recommended by NYC DOHMH. More guidance for pet owners from NYC DOHMH is available. Recommended precautions are even more important for people who are at high risk of serious flu complications, such as those who are being treated for cancer, or who have other chronic health conditions such as diabetes, heart disease, liver disease or kidney disease or women who are pregnant. Any influenza infection can be more serious in these people. CDC also has examined the genetic sequence of the virus isolated from an infected cat in an animal shelter ‎to see if there are genetic changes known to be associated with improved ability to infect and cause illness in mammals. (Subtyping was performed by the Wisconsin Veterinary Diagnostic Laboratory and the U.S. Department of Agriculture’s National Veterinary Services Laboratories (NVSL) provided CDC with the sequencing information.) CDC will begin additional laboratory work with the specimen submitted by New York, including isolating the virus to try to grow it and then conduct further testing to look at the ability of this particular virus to infect and cause disease in animal models. Also, CDC will conduct testing to see whether an existing H7N2 candidate vaccine virus from 2002 could protect people against the 2016 H7N2 virus. CDC routinely develops influenza candidate vaccine viruses when novel influenza viruses are found in people and this was done with the virus isolated from the human infection in 2002. The New York City Department of Health and Mental Hygiene (DOHMH) issued press releases on December 12 and December 22, 2016. DOHMH issued a veterinary advisory[382 KB, 3 Pages] on December 16, 2016 More information is available about the outbreak of avian influenza A (H7N2) among cats at animal shelters in New York City File Formats Help: How do I view different file formats (PDF, DOC, PPT, MPEG) on this site? Adobe PDF file Page last reviewed: December 22, 2016 Page last updated: December 22, 2016 https://www.cdc.gov/flu/spotlights/avian-influenza-cats.htm

Align Segment-ID Name Score E-Value Identity EPI869813 A/duck/France/161108h/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1484.0 0.000000e+00 809/812 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1484.0 0.000000e+00 809/812 (99%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 807/812 (99%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 807/812 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 807/812 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 807/812 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1472.9 0.000000e+00 807/812 (99%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 805/812 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1469.2 0.000000e+00 806/812 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1467.4 0.000000e+00 806/812 (99%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1461.8 0.000000e+00 805/812 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 804/812 (99%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 804/812 (99%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 804/812 (99%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 802/809 (99%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 804/812 (99%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 804/812 (99%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 804/812 (99%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 802/809 (99%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 803/812 (98%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 801/809 (99%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 801/809 (99%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1450.7 0.000000e+00 803/812 (98%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1445.2 0.000000e+00 802/812 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1439.7 0.000000e+00 799/809 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1439.7 0.000000e+00 802/813 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1439.7 0.000000e+00 802/813 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1428.6 0.000000e+00 800/813 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1428.6 0.000000e+00 800/813 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1428.6 0.000000e+00 800/813 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1423.0 0.000000e+00 799/813 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1417.5 0.000000e+00 798/813 (98%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1412.0 0.000000e+00 797/813 (98%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1412.0 0.000000e+00 797/813 (98%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 796/813 (97%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 797/814 (97%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 796/813 (97%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 796/813 (97%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 796/813 (97%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 797/814 (97%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1400.9 0.000000e+00 795/813 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1400.9 0.000000e+00 795/813 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1400.9 0.000000e+00 795/813 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1395.3 0.000000e+00 794/813 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1395.3 0.000000e+00 794/813 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1373.2 0.000000e+00 790/813 (97%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1367.6 0.000000e+00 789/813 (97%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1367.6 0.000000e+00 789/813 (97%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1362.1 0.000000e+00 788/813 (96%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1362.1 0.000000e+00 788/813 (96%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1351.0 0.000000e+00 786/813 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1351.0 0.000000e+00 786/813 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1351.0 0.000000e+00 786/813 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1351.0 0.000000e+00 786/813 (96%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1345.5 0.000000e+00 785/813 (96%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1345.5 0.000000e+00 785/813 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1345.5 0.000000e+00 785/813 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1345.5 0.000000e+00 785/813 (96%)

Align Segment-ID Name Score E-Value Identity EPI869810 A/duck/France/161108h/2016 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI865159 A/mute swan/Croatia/70/2016 (A/H5N8) segment 5 (NP) 2748.9 0.000000e+00 1494/1497 (99%) EPI617879 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%) EPI618049 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%) EPI367573 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%) EPI858837 A/duck/India/10CA01/2016 (A/H5N8) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678072 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678056 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678048 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678032 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678024 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678008 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678000 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI677992 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI677984 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI560341 A/Italy/3/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI476119 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476106 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476099 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476069 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476053 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476046 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476033 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI678088 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI678080 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI678064 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI476113 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%) EPI476039 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%) EPI182084 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI678040 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678016 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI533780 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI533774 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI513586 A/mallard/Sweden/80415/2008 (A/H0) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI841780 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI841772 A/chicken/England/474-016250/2014 (A/H4N6) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI773766 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI476026 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI63227 A/teal/Italy/3931-38/2005 (A/H5N2) segment 5 (NP) 2555.0 0.000000e+00 1461/1499 (97%) EPI248513 A/wild duck/Germany/WV30/06 (A/H1N1) segment 5 (NP) 2553.2 0.000000e+00 1452/1487 (97%) EPI182076 A/common teal/Netherlands/2/2005 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI182044 A/common eider/Netherlands/1/2006 (A/H3N8) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI178531 A/Duck/Italy/62330/2006 (A/H10N7) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI178556 A/Mallard/Italy/46341-12/2006 (A/H10N7) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI173732 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI167810 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI251859 A/whitefronted goose/Netherlands/2/1999 (A/H6N2) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI251618 A/greylag goose/Netherlands/4/1999 (A/H6N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI839729 A/chicken/France/150169a/2015 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI514048 A/mallard/Sweden/68504/2007 (A/H4N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI439828 A/domestic green-winged teal/Hunan/2036/2007 (A/H3N6) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI816832 A/turkey/Poland/14/2013 (A/H9N2) segment 5 (NP) 2523.6 0.000000e+00 1434/1468 (97%) EPI618536 A/mallard/Sweden/101754/2009 (A/H0) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI561718 A/chicken/England/2830/2015 (A/H7N7) segment 5 (NP) 2521.8 0.000000e+00 1455/1499 (97%) EPI118126 A/Chicken/Italy/9097/97 (A/H5N9) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI63189 A/chicken/Italy/22A/1998 (A/H5N9) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI618926 A/mallard/Sweden/52057/2006 (A/H0) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI514198 A/mallard/Sweden/52462/2006 (A/H4N6) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI229963 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2510.7 0.000000e+00 1436/1474 (97%) EPI169293 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2510.7 0.000000e+00 1436/1474 (97%) EPI618873 A/mallard/Sweden/5824/2005 (A/H10N7) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI372284 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI251648 A/mallard/Netherlands/12/2001 (A/H4N2) segment 5 (NP) 2505.2 0.000000e+00 1451/1498 (96%) EPI464915 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 5 (NP) 2501.5 0.000000e+00 1416/1447 (97%) EPI618918 A/mallard/Sweden/51933/2006 (A/H10N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618770 A/mallard/Sweden/52903/2006 (A/H10N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618520 A/mallard/Sweden/7146/2004 (A/H9N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618010 A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514024 A/mallard/Sweden/68571/2007 (A/H4N6) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514010 A/mallard/Sweden/68551/2007 (A/H4N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514001 A/mallard/Sweden/68940/2007 (A/H4N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI513973 A/mallard/Sweden/68761/2007 (A/H4N6) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI513966 A/mallard/Sweden/68677/2007 (A/H0) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI377603 A/mallard/Sweden/68597/2007 (A/H2N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI377595 A/mallard/Sweden/68735/2007 (A/H2N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI372435 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI284614 A/swan/Slovenia/53/2009 (A/H7N7) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI222072 A/gadwall/Altai/1326/2007 (A/H3N8) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI222056 A/gadwall/Altai/1324/2007 (A/H3N8) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI190327 A/mallard/Netherlands/29/2006 (A/H7N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI140249 A/migratory duck/Hong Kong/MP2437/2003 (A/H6N1) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI69241 A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI284342 A/Anas crecca/Spain/1460/2008 (A/H7N9) segment 5 (NP) 2495.9 0.000000e+00 1448/1497 (96%) EPI618660 A/mallard/Sweden/101111/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618535 A/mallard/Sweden/50980/2006 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618493 A/mallard/Sweden/2321/2004 (A/H0) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618484 A/mallard/Sweden/100832/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618470 A/mallard/Sweden/101120/2009 (A/H2N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618460 A/mallard/Sweden/101082/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618446 A/mallard/Sweden/101163/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618431 A/mallard/Sweden/102103/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618355 A/mallard/Sweden/100760/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618348 A/mallard/Sweden/100687/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618336 A/mallard/Sweden/100740/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618322 A/mallard/Sweden/100791/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI617111 A/mallard/Sweden/80329/2008 (A/H11N5) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI514031 A/mallard/Sweden/68575/2007 (A/H4N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI513987 A/mallard/Sweden/68893/2007 (A/H4N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI513980 A/mallard/Sweden/68836/2007 (A/H4N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%)

Align Segment-ID Name Score E-Value Identity EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 835/835 (100%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 833/835 (99%) EPI869813 A/duck/France/161108h/2016 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 832/835 (99%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1519.1 0.000000e+00 829/835 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1517.2 0.000000e+00 830/835 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1493.2 0.000000e+00 826/835 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 825/835 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 826/836 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 826/836 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1476.6 0.000000e+00 824/836 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 824/836 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 824/836 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 823/836 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 822/836 (98%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 821/836 (98%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1460.0 0.000000e+00 821/836 (98%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/837 (98%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/837 (98%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 818/836 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1443.4 0.000000e+00 818/836 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 814/836 (97%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 813/836 (97%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 813/836 (97%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1410.1 0.000000e+00 812/836 (97%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1410.1 0.000000e+00 812/836 (97%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%)

Align Segment-ID Name Score E-Value Identity EPI869688 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 5 (NP) 2699.1 0.000000e+00 1463/1463 (100%) EPI860236 A/wild duck/Poland/82A/2016 (A/H5N8) segment 5 (NP) 2654.8 0.000000e+00 1454/1463 (99%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863858 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863850 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863835 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863827 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863866 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 5 (NP) 2643.7 0.000000e+00 1452/1463 (99%) EPI858837 A/duck/India/10CA01/2016 (A/H5N8) segment 5 (NP) 2527.3 0.000000e+00 1431/1463 (97%) EPI617879 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 5 (NP) 2527.3 0.000000e+00 1431/1463 (97%) EPI618049 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 5 (NP) 2521.8 0.000000e+00 1430/1463 (97%) EPI367573 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 5 (NP) 2510.7 0.000000e+00 1428/1463 (97%) EPI816832 A/turkey/Poland/14/2013 (A/H9N2) segment 5 (NP) 2494.1 0.000000e+00 1425/1463 (97%) EPI678072 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678056 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678048 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678032 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678024 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678008 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678000 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI677992 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI677984 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI560341 A/Italy/3/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI773766 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 5 (NP) 2486.7 0.000000e+00 1424/1463 (97%) EPI678088 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI678080 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI678064 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI476026 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI182076 A/common teal/Netherlands/2/2005 (A/H6N8) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI464915 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 5 (NP) 2481.2 0.000000e+00 1412/1447 (97%) EPI678040 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI678016 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI513586 A/mallard/Sweden/80415/2008 (A/H0) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476119 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476106 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476099 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476069 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476053 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476046 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476033 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476113 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 5 (NP) 2471.9 0.000000e+00 1421/1463 (97%) EPI476039 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 5 (NP) 2471.9 0.000000e+00 1421/1463 (97%) EPI248513 A/wild duck/Germany/WV30/06 (A/H1N1) segment 5 (NP) 2471.9 0.000000e+00 1421/1463 (97%) EPI865159 A/mute swan/Croatia/70/2016 (A/H5N8) segment 5 (NP) 2466.4 0.000000e+00 1420/1463 (97%) EPI182084 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 5 (NP) 2466.4 0.000000e+00 1420/1463 (97%) EPI841772 A/chicken/England/474-016250/2014 (A/H4N6) segment 5 (NP) 2460.9 0.000000e+00 1420/1464 (96%) EPI533780 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI533774 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI182044 A/common eider/Netherlands/1/2006 (A/H3N8) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI178531 A/Duck/Italy/62330/2006 (A/H10N7) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI869810 A/duck/France/161108h/2016 (A/H5N8) segment 5 (NP) 2449.8 0.000000e+00 1417/1463 (96%) EPI841780 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 5 (NP) 2449.8 0.000000e+00 1418/1464 (96%) EPI816848 A/turkey/Poland/09/2014 (A/H9N2) segment 5 (NP) 2449.8 0.000000e+00 1409/1451 (97%) EPI839729 A/chicken/France/150169a/2015 (A/H5N1) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI561718 A/chicken/England/2830/2015 (A/H7N7) segment 5 (NP) 2444.2 0.000000e+00 1417/1464 (96%) EPI463226 A/mallard/Sweden/100580/2009 (A/H6N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI463224 A/mallard/Sweden/100559/2009 (A/H6N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI463221 A/mallard/Sweden/100537/2009 (A/H6N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI178556 A/Mallard/Italy/46341-12/2006 (A/H10N7) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI63227 A/teal/Italy/3931-38/2005 (A/H5N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI484288 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2440.5 0.000000e+00 1398/1437 (97%) EPI816840 A/turkey/Poland/08/2014 (A/H9N2) segment 5 (NP) 2435.0 0.000000e+00 1399/1440 (97%) EPI463229 A/mallard/Sweden/100633/2009 (A/H6N2) segment 5 (NP) 2433.2 0.000000e+00 1414/1463 (96%) EPI173732 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2427.6 0.000000e+00 1414/1464 (96%) EPI167810 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2427.6 0.000000e+00 1414/1464 (96%) EPI229963 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2423.9 0.000000e+00 1397/1440 (97%) EPI169293 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2423.9 0.000000e+00 1397/1440 (97%) EPI118126 A/Chicken/Italy/9097/97 (A/H5N9) segment 5 (NP) 2422.1 0.000000e+00 1412/1463 (96%) EPI63189 A/chicken/Italy/22A/1998 (A/H5N9) segment 5 (NP) 2422.1 0.000000e+00 1412/1463 (96%) EPI439828 A/domestic green-winged teal/Hunan/2036/2007 (A/H3N6) segment 5 (NP) 2416.5 0.000000e+00 1411/1463 (96%) EPI284614 A/swan/Slovenia/53/2009 (A/H7N7) segment 5 (NP) 2411.0 0.000000e+00 1411/1464 (96%) EPI251859 A/whitefronted goose/Netherlands/2/1999 (A/H6N2) segment 5 (NP) 2411.0 0.000000e+00 1410/1463 (96%) EPI251618 A/greylag goose/Netherlands/4/1999 (A/H6N1) segment 5 (NP) 2411.0 0.000000e+00 1410/1463 (96%) EPI102231 A/duck/Taiwan/WB29/99 (A/H6N1) segment 5 (NP) 2411.0 0.000000e+00 1411/1464 (96%) EPI618666 A/mallard/Sweden/2213/2003 (A/H12N5) segment 5 (NP) 2405.5 0.000000e+00 1409/1463 (96%) EPI514048 A/mallard/Sweden/68504/2007 (A/H4N2) segment 5 (NP) 2405.5 0.000000e+00 1409/1463 (96%) EPI332954 A/Anas_platyrhynchos/Camargue/091863/09 (A/H10N7) segment 5 (NP) 2405.5 0.000000e+00 1410/1464 (96%) EPI251817 A/mallard/Sweden/86/2003 (A/H12N5) segment 5 (NP) 2405.5 0.000000e+00 1409/1463 (96%) EPI118136 A/mallard/Italy/36/2002 (A/H5N3) segment 5 (NP) 2405.5 0.000000e+00 1410/1464 (96%) EPI102229 A/chicken/Taiwan/165/99 (A/H6N1) segment 5 (NP) 2405.5 0.000000e+00 1410/1464 (96%) EPI433356 A/mallard/Czech Republic/15902-12K/2009 (A/H11N2) segment 5 (NP) 2399.9 0.000000e+00 1408/1463 (96%) EPI314216 A/wild duck/Taiwan/WB147/2001 (A/H4N6) segment 5 (NP) 2399.9 0.000000e+00 1409/1464 (96%) EPI471123 A/chicken/Iran/ZMT-101/1998 (A/H9N2) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI463238 A/mallard/Sweden/101288/2009 (A/H5N3) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI377571 A/mallard/Sweden/88/2005 (A/H0) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI251662 A/mallard/Netherlands/2/1999 (A/H3N5) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI182108 A/mallard/Netherlands/11/2007 (A/H6N5) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI618926 A/mallard/Sweden/52057/2006 (A/H0) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI618770 A/mallard/Sweden/52903/2006 (A/H10N9) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI618589 A/mallard/Sweden/3328/2003 (A/H12N5) segment 5 (NP) 2388.8 0.000000e+00 1407/1464 (96%) EPI618536 A/mallard/Sweden/101754/2009 (A/H0) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI618101 A/mallard/Sweden/396/2002 (A/H10N4) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI514198 A/mallard/Sweden/52462/2006 (A/H4N6) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI463241 A/mallard/Sweden/101368/2009 (A/H4N6) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI372435 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI251648 A/mallard/Netherlands/12/2001 (A/H4N2) segment 5 (NP) 2388.8 0.000000e+00 1407/1464 (96%) EPI89042 A/Pigeon/Nanchang/8-142/2000 (A/H3N6) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI69241 A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI284342 A/Anas crecca/Spain/1460/2008 (A/H7N9) segment 5 (NP) 2385.1 0.000000e+00 1405/1463 (96%) EPI618873 A/mallard/Sweden/5824/2005 (A/H10N7) segment 5 (NP) 2383.3 0.000000e+00 1405/1463 (96%)

Align Segment-ID Name Score E-Value Identity EPI869686 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI868847 A/turkey/England/052131/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI860235 A/wild duck/Poland/82A/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI863848 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 3 (PA) 3941.9 0.000000e+00 2145/2151 (99%) EPI863864 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI863833 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 3 (PA) 3938.2 0.000000e+00 2144/2151 (99%) EPI863825 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 3 (PA) 3938.2 0.000000e+00 2144/2151 (99%) EPI863856 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 3 (PA) 3930.8 0.000000e+00 2142/2151 (99%) EPI614265 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%) EPI446529 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI596393 A/muscovy duck/Vietnam/LBM201/2012 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI441050 A/muscovy duck/Vietnam/LBM198/2012 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI418270 A/muscovy duck/Vietnam/LBM189/2012 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI538458 A/common teal/Mongolia/1920/2011 (A/H4N6) segment 3 (PA) 3661.2 0.000000e+00 2079/2127 (97%) EPI692479 A/duck/Hubei/S2114/2012 (A/H4N8) segment 3 (PA) 3646.4 0.000000e+00 2095/2154 (97%) EPI598436 A/duck/Jiangxi/6535/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598434 A/duck/Jiangxi/6648/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598433 A/duck/Jiangxi/6645/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598431 A/duck/Jiangxi/6624/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598430 A/duck/Jiangxi/6602/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598428 A/duck/Jiangxi/6568/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598425 A/duck/Jiangxi/6544/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598424 A/duck/Jiangxi/6526/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598423 A/duck/Jiangxi/6515/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598364 A/duck/Jiangxi/6496/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598362 A/duck/Jiangxi/6474/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598361 A/duck/Jiangxi/6460/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598358 A/duck/Jiangxi/6450/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598432 A/duck/Jiangxi/6634/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598429 A/duck/Jiangxi/6584/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598427 A/duck/Jiangxi/6556/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598426 A/duck/Jiangxi/6547/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598422 A/duck/Jiangxi/6505/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598363 A/duck/Jiangxi/6487/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI596484 A/duck/Vietnam/LBM553/2013 (A/H3N8) segment 3 (PA) 3635.3 0.000000e+00 2092/2153 (97%) EPI534727 A/duck/Zhejiang/4637/2013 (A/H3N2) segment 3 (PA) 3635.3 0.000000e+00 2071/2122 (97%) EPI336009 A/teal/Chany/444/2009 (A/H8N8) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%) EPI534730 A/duck/Zhejiang/4625/2013 (A/H3N2) segment 3 (PA) 3633.5 0.000000e+00 2070/2121 (97%) EPI704339 A/duck/Mongolia/179/2015 (A/H3N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI704322 A/duck/Mongolia/173/2015 (A/H3N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI577205 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI476086 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI476085 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI475922 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI476088 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI476087 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI476065 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI475923 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI475921 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI753580 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI461625 A/duck/Hunan/S11893/2012 (A/H4N6) segment 3 (PA) 3618.7 0.000000e+00 2087/2151 (97%) EPI845253 A/environment/Sichuan/315068/2015 (A/H6N2) segment 3 (PA) 3613.2 0.000000e+00 2087/2152 (96%) EPI475919 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 3 (PA) 3613.2 0.000000e+00 2087/2152 (96%) EPI845260 A/environment/Sichuan/315069/2015 (A/H6N2) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI841762 A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI542399 A/muscovy duck/Vietnam/LBM687/2014 (A/H4N6) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI222086 A/garganey/Altai/1213/2007 (A/H5N2) segment 3 (PA) 3607.6 0.000000e+00 2085/2151 (96%) EPI222046 A/gadwall/Altai/1202/2007 (A/H5N2) segment 3 (PA) 3607.6 0.000000e+00 2085/2151 (96%) EPI387543 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 3 (PA) 3602.1 0.000000e+00 2066/2124 (97%) EPI538449 A/ruddy shelduck/Mongolia/686C2/2008 (A/H2N3) segment 3 (PA) 3594.7 0.000000e+00 2066/2126 (97%) EPI534726 A/duck/Zhejiang/4613/2013 (A/H3N2) segment 3 (PA) 3592.9 0.000000e+00 2051/2103 (97%) EPI591175 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 3 (PA) 3591.0 0.000000e+00 2083/2152 (96%) EPI591172 A/duck/Jiangxi/34894/2013 (A/H0) segment 3 (PA) 3591.0 0.000000e+00 2083/2152 (96%) EPI591173 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 3 (PA) 3585.5 0.000000e+00 2083/2153 (96%) EPI704519 A/duck/Mongolia/518/2015 (A/H10N3) segment 3 (PA) 3574.4 0.000000e+00 2081/2153 (96%) EPI598773 A/duck/Jiangxi/6613/2013 (A/H0) segment 3 (PA) 3574.4 0.000000e+00 2081/2153 (96%) EPI614267 A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 3 (PA) 3568.8 0.000000e+00 2078/2151 (96%) EPI823780 A/environment/Kamchatka/24/2016 (A/H13N8) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI704371 A/duck/Mongolia/211/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI704363 A/duck/Mongolia/208/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI704314 A/duck/Mongolia/167/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI693705 A/duck/Mongolia/83/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI614279 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI704258 A/duck/Mongolia/30/2015 (A/H3N8) segment 3 (PA) 3557.8 0.000000e+00 2078/2153 (96%) EPI683216 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 3 (PA) 3557.8 0.000000e+00 2077/2152 (96%) EPI511081 A/mallard/Sweden/52405/2006 (A/H0) segment 3 (PA) 3552.2 0.000000e+00 2076/2152 (96%) EPI704437 A/duck/Mongolia/777/2015 (A/H3N8) segment 3 (PA) 3546.7 0.000000e+00 2076/2153 (96%) EPI401787 A/spot-billed duck/Xianghai/427/2011 (A/H5N2) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI372287 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI823764 A/environment/Kamchatka/23/2016 (A/H13N8) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI704543 A/duck/Mongolia/742/2015 (A/H10N7) segment 3 (PA) 3541.1 0.000000e+00 2075/2153 (96%) EPI704421 A/duck/Mongolia/655/2015 (A/H2N3) segment 3 (PA) 3541.1 0.000000e+00 2075/2153 (96%) EPI296486 A/mallard/Netherlands/28/2006 (A/H3N1) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI222163 A/mallard/Altai/1208/2007 (A/H3N6) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI222094 A/garganey/Altai/1216/2007 (A/H3N6) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI704388 A/duck/Mongolia/482/2015 (A/H2N3) segment 3 (PA) 3535.6 0.000000e+00 2074/2153 (96%) EPI372351 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI613953 A/mallard/Sweden/101993/2009 (A/H2N9) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI598732 A/duck/Jiangxi/32180/2013 (A/H0) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI598348 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI511172 A/mallard/Sweden/52299/2006 (A/H4N6) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI234643 A/duck/Beijing/40/04 (A/H3N8) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI232397 A/duck/Beijing/61/05 (A/H3N8) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI181966 A/mallard/Netherlands/2/2005 (A/H4N2) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI613943 A/mallard/Sweden/4932/2004 (A/H9N2) segment 3 (PA) 3519.0 0.000000e+00 2069/2151 (96%) EPI598766 A/duck/Jiangxi/5423/2014 (A/H0) segment 3 (PA) 3519.0 0.000000e+00 2070/2152 (96%) EPI598764 A/duck/Jiangxi/34864/2013 (A/H0) segment 3 (PA) 3519.0 0.000000e+00 2070/2152 (96%) EPI591116 A/duck/Jiangxi/5418/2014 (A/H0) segment 3 (PA) 3519.0 0.000000e+00 2070/2152 (96%) EPI372327 A/shoveler/Egypt/00134-NAMRU3/2005 (A/H1N1) segment 3 (PA) 3519.0 0.000000e+00 2069/2151 (96%) EPI296254 A/wild duck/Korea/HDR02/2005 (A/H1N1) segment 3 (PA) 3513.4 0.000000e+00 2068/2151 (96%)

Align Segment-ID Name Score E-Value Identity EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4196.7 0.000000e+00 2274/2274 (100%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4152.4 0.000000e+00 2265/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4146.8 0.000000e+00 2264/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI869807 A/duck/France/161108h/2016 (A/H5N8) segment 2 (PB1) 4130.2 0.000000e+00 2261/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2259/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4119.1 0.000000e+00 2257/2271 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4097.0 0.000000e+00 2255/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2255/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4074.8 0.000000e+00 2251/2274 (98%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4074.8 0.000000e+00 2251/2274 (98%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2245/2275 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3897.6 0.000000e+00 2220/2275 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3892.0 0.000000e+00 2219/2275 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3869.9 0.000000e+00 2215/2275 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3864.3 0.000000e+00 2214/2275 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3847.7 0.000000e+00 2211/2275 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3836.6 0.000000e+00 2207/2272 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3836.6 0.000000e+00 2209/2275 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2209/2276 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3831.1 0.000000e+00 2209/2276 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3825.5 0.000000e+00 2207/2275 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3820.0 0.000000e+00 2205/2274 (96%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3820.0 0.000000e+00 2205/2274 (96%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3820.0 0.000000e+00 2206/2275 (96%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3820.0 0.000000e+00 2206/2275 (96%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3814.5 0.000000e+00 2205/2275 (96%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3812.6 0.000000e+00 2193/2258 (97%) EPI704412 A/duck/Mongolia/543/2015 (A/H4N6) segment 2 (PB1) 3808.9 0.000000e+00 2205/2276 (96%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3808.9 0.000000e+00 2204/2275 (96%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3808.9 0.000000e+00 2205/2276 (96%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3803.4 0.000000e+00 2203/2275 (96%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3803.4 0.000000e+00 2204/2276 (96%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3803.4 0.000000e+00 2203/2275 (96%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3797.8 0.000000e+00 2202/2275 (96%)

Align Segment-ID Name Score E-Value Identity EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI863862 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 1 (PB2) 4135.8 0.000000e+00 2266/2280 (99%) EPI704280 A/duck/Mongolia/118/2015 (A/H4N6) segment 1 (PB2) 3956.6 0.000000e+00 2235/2281 (97%) EPI704256 A/duck/Mongolia/30/2015 (A/H3N8) segment 1 (PB2) 3940.0 0.000000e+00 2232/2281 (97%) EPI704541 A/duck/Mongolia/742/2015 (A/H10N7) segment 1 (PB2) 3934.5 0.000000e+00 2231/2281 (97%) EPI704419 A/duck/Mongolia/655/2015 (A/H2N3) segment 1 (PB2) 3934.5 0.000000e+00 2231/2281 (97%) EPI704385 A/duck/Mongolia/482/2015 (A/H2N3) segment 1 (PB2) 3928.9 0.000000e+00 2230/2281 (97%) EPI704403 A/duck/Mongolia/521/2015 (A/H3N8) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%) EPI469157 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%) EPI773754 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2222/2281 (97%) EPI774332 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%) EPI774315 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI774198 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI836611 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI823745 A/wild duck/Tyva/35/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774495 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774455 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774447 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774439 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774349 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774323 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774274 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774215 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774207 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774190 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774127 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI858841 A/painted stork/India/10CA03/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI836603 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI823753 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774487 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774480 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774431 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774416 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774407 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774399 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774375 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774366 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774358 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774341 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774291 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774264 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774248 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774139 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI823457 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI806627 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 1 (PB2) 3856.9 0.000000e+00 2218/2282 (97%) EPI774463 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774423 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774307 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774299 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774283 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774256 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774239 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774231 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774223 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774173 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774110 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI823896 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 1 (PB2) 3851.4 0.000000e+00 2217/2282 (97%) EPI774503 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774472 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774383 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774182 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774147 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774118 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774391 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI774165 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2216/2282 (97%) EPI774156 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI858833 A/duck/India/10CA01/2016 (A/H5N8) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%) EPI704288 A/duck/Mongolia/127/2015 (A/H4N6) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI704264 A/duck/Mongolia/101/2015 (A/H4N6) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI683169 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI683168 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI617754 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 1 (PB2) 3818.1 0.000000e+00 2211/2282 (96%) EPI704394 A/duck/Mongolia/520/2015 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2209/2281 (96%) EPI527588 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI692341 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI692333 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI527576 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI335395 A/aquatic bird/Korea/CN9/2009 (A/H6N8) segment 1 (PB2) 3796.0 0.000000e+00 2208/2283 (96%) EPI845250 A/environment/Sichuan/315068/2015 (A/H6N2) segment 1 (PB2) 3790.4 0.000000e+00 2205/2281 (96%) EPI584398 A/duck/Hunan/S3137/2009 (A/H10N8) segment 1 (PB2) 3790.4 0.000000e+00 2206/2282 (96%) EPI845251 A/environment/Sichuan/315069/2015 (A/H6N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%) EPI399891 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3784.9 0.000000e+00 2206/2283 (96%) EPI335411 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 1 (PB2) 3784.9 0.000000e+00 2205/2282 (96%) EPI314734 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3784.9 0.000000e+00 2206/2283 (96%) EPI704435 A/duck/Mongolia/777/2015 (A/H3N8) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI469227 A/duck/Jiangxi/16769/2010 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469225 A/duck/Jiangxi/16326/2010 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469143 A/duck/Jiangxi/16285/2010 (A/H7N3) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469228 A/duck/Jiangxi/21980/2010 (A/H7N7) segment 1 (PB2) 3768.3 0.000000e+00 2202/2282 (96%) EPI527590 A/ruddy shelduck/Mongolia/1209/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI527569 A/ruddy shelduck/Mongolia/436/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2202/2283 (96%) EPI527561 A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI527546 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI469226 A/duck/Jiangxi/16736/2010 (A/H7N3) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%)

Align Segment-ID Name Score E-Value Identity EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1779.4 0.000000e+00 973/978 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1737.0 0.000000e+00 969/983 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1703.7 0.000000e+00 963/983 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1689.0 0.000000e+00 960/983 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%)

Align Segment-ID Name Score E-Value Identity EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2560.6 0.000000e+00 1399/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1395/1407 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1390/1407 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1385/1408 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2459.0 0.000000e+00 1383/1408 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1379/1408 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1377/1408 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2420.2 0.000000e+00 1376/1408 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1376/1409 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1374/1408 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1374/1408 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1375/1409 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1371/1408 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1372/1409 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2390.7 0.000000e+00 1352/1380 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1370/1408 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1370/1408 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1370/1409 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1368/1408 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1359/1400 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1353/1395 (96%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1354/1397 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1361/1409 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1359/1408 (96%)

Align Segment-ID Name Score E-Value Identity EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3144.1 0.000000e+00 1704/1704 (100%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3122.0 0.000000e+00 1699/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3116.4 0.000000e+00 1698/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3116.4 0.000000e+00 1698/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3110.9 0.000000e+00 1697/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3105.3 0.000000e+00 1696/1704 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1693/1705 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1688/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2977.9 0.000000e+00 1673/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2977.9 0.000000e+00 1673/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1671/1704 (98%) EPI675774 A/duck/Liaoning/S1001/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1671/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1669/1704 (97%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1668/1705 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2935.4 0.000000e+00 1602/1609 (99%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1666/1705 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1666/1705 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2928.1 0.000000e+00 1665/1705 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1664/1705 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1664/1706 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1663/1705 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1664/1706 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1663/1705 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1662/1706 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1661/1705 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1661/1705 (97%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2900.4 0.000000e+00 1660/1705 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2896.7 0.000000e+00 1658/1703 (97%) EPI749889 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 4 (HA) 2894.8 0.000000e+00 1660/1706 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1658/1705 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2889.3 0.000000e+00 1658/1705 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2883.7 0.000000e+00 1658/1706 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2878.2 0.000000e+00 1656/1705 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2872.7 0.000000e+00 1655/1705 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2872.7 0.000000e+00 1656/1706 (97%)